RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 NISCHQ9Y2I1 1504 aa17.74■□□□□ 0.43
DDB1-217ENST00000540166 DCAF8L2P0C7V8 631 aa16.28■□□□□ 0.2
DDB1-217ENST00000540166 ABCC9O60706 1549 aa16.09■□□□□ 0.17
DDB1-217ENST00000540166 CCDC180Q9P1Z9 1646 aa15.53■□□□□ 0.08
DDB1-217ENST00000540166 PABPN1Q86U42 306 aaKnown RBP eCLIP15.28■□□□□ 0.04
DDB1-217ENST00000540166 RB1CC1Q8TDY2 1594 aa15.12■□□□□ 0.01
DDB1-217ENST00000540166 NACADO15069 1562 aa14.94□□□□□ -0.02
DDB1-217ENST00000540166 SHROOM4Q9ULL8 1493 aa14.75□□□□□ -0.05
DDB1-217ENST00000540166 DNAJC5BQ9UF47 199 aa14.69□□□□□ -0.06
DDB1-217ENST00000540166 ZCCHC6Q5VYS8 1495 aaKnown RBP14.62□□□□□ -0.07
DDB1-217ENST00000540166 SCRIBQ14160 1630 aa14.61□□□□□ -0.07
DDB1-217ENST00000540166 MYO15BQ96JP2 1530 aa14.5□□□□□ -0.09
DDB1-217ENST00000540166 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
DDB1-217ENST00000540166 CECR2Q9BXF3 1484 aa14.41□□□□□ -0.1
DDB1-217ENST00000540166 PELP1Q8IZL8 1130 aaKnown RBP14.37□□□□□ -0.11
DDB1-217ENST00000540166 SUPT5HO00267 1087 aaKnown RBP14.28□□□□□ -0.12
DDB1-217ENST00000540166 HRCP23327 699 aa14.19□□□□□ -0.14
DDB1-217ENST00000540166 BICRAQ9NZM4 1560 aa14.18□□□□□ -0.14
DDB1-217ENST00000540166 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
DDB1-217ENST00000540166 EIF4G1Q04637 1599 aaKnown RBP14.15□□□□□ -0.14
DDB1-217ENST00000540166 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
DDB1-217ENST00000540166 UNC13AQ9UPW8 1703 aa14.09□□□□□ -0.15
DDB1-217ENST00000540166 PCGF6Q9BYE7 350 aa14.02□□□□□ -0.17
DDB1-217ENST00000540166 MYT1Q01538 1121 aa13.99□□□□□ -0.17
DDB1-217ENST00000540166 BAZ1BQ9UIG0 1483 aaKnown RBP13.98□□□□□ -0.17
DDB1-217ENST00000540166 SMARCA2P51531 1590 aa13.89□□□□□ -0.19
DDB1-217ENST00000540166 PPARGC1BQ86YN6 1023 aaKnown RBP13.89□□□□□ -0.19
DDB1-217ENST00000540166 BAZ1AQ9NRL2 1556 aaPredicted RBP13.87□□□□□ -0.19
DDB1-217ENST00000540166 ATAD2BQ9ULI0 1458 aa13.85□□□□□ -0.19
DDB1-217ENST00000540166 NCAPD3P42695 1498 aa13.81□□□□□ -0.2
DDB1-217ENST00000540166 PDS5BQ9NTI5 1447 aa13.81□□□□□ -0.2
DDB1-217ENST00000540166 FBLN2P98095 1184 aa13.78□□□□□ -0.2
DDB1-217ENST00000540166 SMARCA4P51532 1647 aa13.71□□□□□ -0.21
DDB1-217ENST00000540166 TRIM41Q8WV44 630 aa13.71□□□□□ -0.21
DDB1-217ENST00000540166 MROH2BQ7Z745 1585 aa13.67□□□□□ -0.22
DDB1-217ENST00000540166 CADPSQ9ULU8 1353 aa13.67□□□□□ -0.22
DDB1-217ENST00000540166 NESP48681 1621 aa13.63□□□□□ -0.23
DDB1-217ENST00000540166 CHIC1Q5VXU3 224 aa13.63□□□□□ -0.23
DDB1-217ENST00000540166 DNAJC5Q9H3Z4 198 aa13.6□□□□□ -0.23
DDB1-217ENST00000540166 HMGXB3Q12766 1538 aa13.59□□□□□ -0.23
DDB1-217ENST00000540166 RSF1Q96T23 1441 aaPredicted RBP13.58□□□□□ -0.24
DDB1-217ENST00000540166 ZEB1P37275 1124 aaPredicted RBP13.55□□□□□ -0.24
DDB1-217ENST00000540166 OSCARQ8IYS5 282 aa13.54□□□□□ -0.24
DDB1-217ENST00000540166 CUX2O14529 1486 aa13.54□□□□□ -0.24
DDB1-217ENST00000540166 CEP164Q9UPV0 1460 aa13.54□□□□□ -0.24
DDB1-217ENST00000540166 FAM9AQ8IZU1 332 aaPredicted RBP13.5□□□□□ -0.25
DDB1-217ENST00000540166 CHMP7Q8WUX9 453 aaPredicted RBP13.49□□□□□ -0.25
DDB1-217ENST00000540166 SCAF1Q9H7N4 1312 aaKnown RBP13.48□□□□□ -0.25
DDB1-217ENST00000540166 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
DDB1-217ENST00000540166 TRHP20396 242 aaPredicted RBP13.46□□□□□ -0.25
DDB1-217ENST00000540166 WIZO95785 1651 aa13.46□□□□□ -0.25
DDB1-217ENST00000540166 LAMC3Q9Y6N6 1575 aa13.45□□□□□ -0.26
DDB1-217ENST00000540166 MRC2Q9UBG0 1479 aa13.43□□□□□ -0.26
DDB1-217ENST00000540166 LOC105371045A0A1W2PR82 267 aa13.43□□□□□ -0.26
DDB1-217ENST00000540166 CENPBP07199 599 aaPredicted RBP13.42□□□□□ -0.26
DDB1-217ENST00000540166 TTBK1Q5TCY1 1321 aaPredicted RBP13.41□□□□□ -0.26
DDB1-217ENST00000540166 TRIM26Q12899 539 aaPredicted RBP13.41□□□□□ -0.26
DDB1-217ENST00000540166 TOP2AP11388 1531 aaKnown RBP13.36□□□□□ -0.27
DDB1-217ENST00000540166 EHMT2Q96KQ7 1210 aa13.35□□□□□ -0.27
DDB1-217ENST00000540166 CYB5RLQ6IPT4 315 aa13.34□□□□□ -0.27
DDB1-217ENST00000540166 CCDC88BA6NC98 1476 aa13.33□□□□□ -0.27
DDB1-217ENST00000540166 PEG3Q9GZU2 1588 aa13.3□□□□□ -0.28
DDB1-217ENST00000540166 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
DDB1-217ENST00000540166 CFTRP13569 1480 aa13.29□□□□□ -0.28
DDB1-217ENST00000540166 ABCC8Q09428 1581 aa13.27□□□□□ -0.29
DDB1-217ENST00000540166 TDRD9Q8NDG6 1382 aaKnown RBP13.26□□□□□ -0.29
DDB1-217ENST00000540166 SOGA1O94964 1423 aa13.25□□□□□ -0.29
DDB1-217ENST00000540166 ACIN1Q9UKV3 1341 aaKnown RBP13.24□□□□□ -0.29
DDB1-217ENST00000540166 GTF3C3Q9Y5Q9 886 aa13.24□□□□□ -0.29
DDB1-217ENST00000540166 RANGAP1P46060 587 aaPredicted RBP13.19□□□□□ -0.3
DDB1-217ENST00000540166 IFT140Q96RY7 1462 aa13.18□□□□□ -0.3
DDB1-217ENST00000540166 KIF21AQ7Z4S6 1674 aa13.15□□□□□ -0.3
DDB1-217ENST00000540166 AQRO60306 1485 aaKnown RBP eCLIP13.14□□□□□ -0.317e-7■■■■□ 23.5
DDB1-217ENST00000540166 NEUROD1Q13562 356 aa13.12□□□□□ -0.31
DDB1-217ENST00000540166 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.12□□□□□ -0.31
DDB1-217ENST00000540166 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
DDB1-217ENST00000540166 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
DDB1-217ENST00000540166 AEBP2Q6ZN18 517 aaPredicted RBP13.1□□□□□ -0.31
DDB1-217ENST00000540166 TOPBP1Q92547 1522 aa13.1□□□□□ -0.31
DDB1-217ENST00000540166 URB2Q14146 1524 aaKnown RBP13.09□□□□□ -0.31
DDB1-217ENST00000540166 ATP1B4Q9UN42 357 aaPredicted RBP13.08□□□□□ -0.32
DDB1-217ENST00000540166 WDR62O43379 1518 aa13.07□□□□□ -0.32
DDB1-217ENST00000540166 CCER1Q8TC90 406 aaPredicted RBP13.07□□□□□ -0.32
DDB1-217ENST00000540166 RAD54L2Q9Y4B4 1467 aa13.06□□□□□ -0.32
DDB1-217ENST00000540166 YTHDC1Q96MU7 727 aaKnown RBP13.05□□□□□ -0.32
DDB1-217ENST00000540166 THOC2Q8NI27 1593 aaKnown RBP13.05□□□□□ -0.32
DDB1-217ENST00000540166 ZNF608Q9ULD9 1512 aaPredicted RBP13.02□□□□□ -0.32
DDB1-217ENST00000540166 FGD5Q6ZNL6 1462 aa13.02□□□□□ -0.33
DDB1-217ENST00000540166 DIEXFQ68CQ4 756 aaKnown RBP13.02□□□□□ -0.33
DDB1-217ENST00000540166 DNMBPQ6XZF7 1577 aa13□□□□□ -0.33
DDB1-217ENST00000540166 UBTFP17480 764 aaKnown RBP12.99□□□□□ -0.33
DDB1-217ENST00000540166 POLA1P09884 1462 aaPredicted RBP12.99□□□□□ -0.33
DDB1-217ENST00000540166 GRIN2BQ13224 1484 aa12.98□□□□□ -0.33
DDB1-217ENST00000540166 GAPVD1Q14C86 1478 aa12.98□□□□□ -0.33
DDB1-217ENST00000540166 JPH4Q96JJ6 628 aa12.94□□□□□ -0.34
DDB1-217ENST00000540166 SNAPC4Q5SXM2 1469 aa12.93□□□□□ -0.34
DDB1-217ENST00000540166 MYT1LQ9UL68 1186 aa12.93□□□□□ -0.34
DDB1-217ENST00000540166 KIF27Q86VH2 1401 aa12.93□□□□□ -0.34
DDB1-217ENST00000540166 ARID3CA6NKF2 412 aa12.89□□□□□ -0.35
DDB1-217ENST00000540166 P3H3Q8IVL6 736 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms