RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 NISCHQ9Y2I1 1504 aa33.2■■■□□ 2.91
VCL-205ENST00000478896 CCDC180Q9P1Z9 1646 aa29.86■■■□□ 2.37
VCL-205ENST00000478896 ABCC9O60706 1549 aa29.86■■■□□ 2.37
VCL-205ENST00000478896 RB1CC1Q8TDY2 1594 aa28.43■■■□□ 2.14
VCL-205ENST00000478896 NACADO15069 1562 aa28.2■■■□□ 2.11
VCL-205ENST00000478896 DCAF8L2P0C7V8 631 aa28.07■■■□□ 2.08
VCL-205ENST00000478896 DNAJC5BQ9UF47 199 aa27.92■■■□□ 2.06
VCL-205ENST00000478896 UNC13AQ9UPW8 1703 aa27.81■■■□□ 2.04
VCL-205ENST00000478896 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
VCL-205ENST00000478896 PABPN1Q86U42 306 aaKnown RBP eCLIP27.76■■■□□ 2.03
VCL-205ENST00000478896 BICRAQ9NZM4 1560 aa27.54■■■□□ 2
VCL-205ENST00000478896 ZCCHC6Q5VYS8 1495 aaKnown RBP27.53■■■□□ 2
VCL-205ENST00000478896 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
VCL-205ENST00000478896 SCRIBQ14160 1630 aa27.23■■□□□ 1.95
VCL-205ENST00000478896 SHROOM4Q9ULL8 1493 aa27.2■■□□□ 1.95
VCL-205ENST00000478896 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
VCL-205ENST00000478896 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
VCL-205ENST00000478896 CECR2Q9BXF3 1484 aa26.89■■□□□ 1.9
VCL-205ENST00000478896 NCAPD3P42695 1498 aa25.98■■□□□ 1.75
VCL-205ENST00000478896 SMARCA4P51532 1647 aa25.94■■□□□ 1.74
VCL-205ENST00000478896 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
VCL-205ENST00000478896 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
VCL-205ENST00000478896 HMGXB3Q12766 1538 aa25.85■■□□□ 1.73
VCL-205ENST00000478896 ERCC6Q03468 1493 aa25.83■■□□□ 1.73
VCL-205ENST00000478896 BAZ1AQ9NRL2 1556 aaPredicted RBP25.81■■□□□ 1.72
VCL-205ENST00000478896 CUX2O14529 1486 aa25.75■■□□□ 1.71
VCL-205ENST00000478896 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
VCL-205ENST00000478896 DNAJC5Q9H3Z4 198 aa25.68■■□□□ 1.7
VCL-205ENST00000478896 PEG3Q9GZU2 1588 aa25.65■■□□□ 1.7
VCL-205ENST00000478896 NESP48681 1621 aa25.63■■□□□ 1.69
VCL-205ENST00000478896 MROH2BQ7Z745 1585 aa25.58■■□□□ 1.69
VCL-205ENST00000478896 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
VCL-205ENST00000478896 THOC2Q8NI27 1593 aaKnown RBP25.41■■□□□ 1.66
VCL-205ENST00000478896 KIF21AQ7Z4S6 1674 aa25.36■■□□□ 1.65
VCL-205ENST00000478896 WIZO95785 1651 aa25.32■■□□□ 1.64
VCL-205ENST00000478896 PDS5BQ9NTI5 1447 aa25.31■■□□□ 1.64
VCL-205ENST00000478896 CADPSQ9ULU8 1353 aa25.21■■□□□ 1.63
VCL-205ENST00000478896 MRC2Q9UBG0 1479 aa25.1■■□□□ 1.61
VCL-205ENST00000478896 WDR62O43379 1518 aa25.05■■□□□ 1.6
VCL-205ENST00000478896 RSF1Q96T23 1441 aaPredicted RBP25.02■■□□□ 1.6
VCL-205ENST00000478896 CEP164Q9UPV0 1460 aa25.02■■□□□ 1.6
VCL-205ENST00000478896 TOP2AP11388 1531 aaKnown RBP24.99■■□□□ 1.59
VCL-205ENST00000478896 FANCD2Q9BXW9 1451 aa24.96■■□□□ 1.59
VCL-205ENST00000478896 CFTRP13569 1480 aa24.92■■□□□ 1.58
VCL-205ENST00000478896 PRDM2Q13029 1718 aa24.79■■□□□ 1.56
VCL-205ENST00000478896 URB2Q14146 1524 aaKnown RBP24.74■■□□□ 1.55
VCL-205ENST00000478896 CCDC88BA6NC98 1476 aa24.66■■□□□ 1.54
VCL-205ENST00000478896 TRIM41Q8WV44 630 aa24.64■■□□□ 1.54
VCL-205ENST00000478896 OSCARQ8IYS5 282 aa24.53■■□□□ 1.52
VCL-205ENST00000478896 IFT140Q96RY7 1462 aa24.5■■□□□ 1.51
VCL-205ENST00000478896 TOPBP1Q92547 1522 aa24.49■■□□□ 1.51
VCL-205ENST00000478896 ZNF608Q9ULD9 1512 aaPredicted RBP24.44■■□□□ 1.5
VCL-205ENST00000478896 ABCC8Q09428 1581 aa24.43■■□□□ 1.5
VCL-205ENST00000478896 DNMBPQ6XZF7 1577 aa24.42■■□□□ 1.5
VCL-205ENST00000478896 EIF4G3O43432 1585 aaKnown RBP24.37■■□□□ 1.49
VCL-205ENST00000478896 RIMBP3CA6NJZ7 1639 aa24.27■■□□□ 1.48
VCL-205ENST00000478896 RIMBP3BA6NNM3 1639 aa24.27■■□□□ 1.48
VCL-205ENST00000478896 RIMBP3Q9UFD9 1639 aa24.27■■□□□ 1.48
VCL-205ENST00000478896 TARBP1Q13395 1621 aaKnown RBP24.25■■□□□ 1.47
VCL-205ENST00000478896 POLA1P09884 1462 aaPredicted RBP24.23■■□□□ 1.47
VCL-205ENST00000478896 AQRO60306 1485 aaKnown RBP eCLIP24.21■■□□□ 1.473e-7■■■■□ 20
VCL-205ENST00000478896 CHD1O14646 1710 aa24.21■■□□□ 1.47
VCL-205ENST00000478896 ARHGEF11O15085 1522 aa24.18■■□□□ 1.46
VCL-205ENST00000478896 RAD54L2Q9Y4B4 1467 aa24.13■■□□□ 1.45
VCL-205ENST00000478896 SOGA1O94964 1423 aa24.1■■□□□ 1.45
VCL-205ENST00000478896 FBLN2P98095 1184 aa24.1■■□□□ 1.45
VCL-205ENST00000478896 FGD5Q6ZNL6 1462 aa24.09■■□□□ 1.45
VCL-205ENST00000478896 TDRD9Q8NDG6 1382 aaKnown RBP24.05■■□□□ 1.44
VCL-205ENST00000478896 WDR97A6NE52 1622 aa24.05■■□□□ 1.44
VCL-205ENST00000478896 CUX1P39880 1505 aa24.05■■□□□ 1.44
VCL-205ENST00000478896 SNAPC4Q5SXM2 1469 aa24.01■■□□□ 1.43
VCL-205ENST00000478896 CYB5RLQ6IPT4 315 aa23.97■■□□□ 1.43
VCL-205ENST00000478896 SUPT5HO00267 1087 aaKnown RBP23.95■■□□□ 1.42
VCL-205ENST00000478896 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
VCL-205ENST00000478896 ARAP1Q96P48 1450 aa23.93■■□□□ 1.42
VCL-205ENST00000478896 GRIN2BQ13224 1484 aa23.92■■□□□ 1.42
VCL-205ENST00000478896 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
VCL-205ENST00000478896 CHMP7Q8WUX9 453 aaPredicted RBP23.9■■□□□ 1.42
VCL-205ENST00000478896 PBRM1Q86U86 1689 aa23.89■■□□□ 1.42
VCL-205ENST00000478896 CLASP1Q7Z460 1538 aa23.86■■□□□ 1.41
VCL-205ENST00000478896 SYNJ2O15056 1496 aa23.85■■□□□ 1.41
VCL-205ENST00000478896 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
VCL-205ENST00000478896 ABCA10Q8WWZ4 1543 aa23.8■■□□□ 1.4
VCL-205ENST00000478896 ABCA5Q8WWZ7 1642 aa23.8■■□□□ 1.4
VCL-205ENST00000478896 TRHP20396 242 aaPredicted RBP23.77■■□□□ 1.4
VCL-205ENST00000478896 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
VCL-205ENST00000478896 BIVM-ERCC5R4GMW8 1640 aa23.69■■□□□ 1.38
VCL-205ENST00000478896 TOP2BQ02880 1626 aa23.67■■□□□ 1.38
VCL-205ENST00000478896 ADAMTS12P58397 1594 aa23.63■■□□□ 1.37
VCL-205ENST00000478896 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
VCL-205ENST00000478896 CEP170Q5SW79 1584 aa23.55■■□□□ 1.36
VCL-205ENST00000478896 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
VCL-205ENST00000478896 NUP160Q12769 1436 aa23.51■■□□□ 1.35
VCL-205ENST00000478896 ERICH3Q5RHP9 1530 aa23.51■■□□□ 1.35
VCL-205ENST00000478896 ERCC6L2Q5T890 1561 aa23.49■■□□□ 1.35
VCL-205ENST00000478896 SHROOM2Q13796 1616 aa23.44■■□□□ 1.34
VCL-205ENST00000478896 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
VCL-205ENST00000478896 PRG4Q92954 1404 aaPredicted RBP23.3■■□□□ 1.32
VCL-205ENST00000478896 JPH4Q96JJ6 628 aa23.25■■□□□ 1.31
VCL-205ENST00000478896 CUL7Q14999 1698 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms