RNA–Protein interactions for RNA: ENST00000358389.7

CNOT3-202, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 4,118 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-202ENST00000358389 NISCHQ9Y2I1 1504 aa20.28■□□□□ 0.84
CNOT3-202ENST00000358389 HRCP23327 699 aa19.18■□□□□ 0.66
CNOT3-202ENST00000358389 DCAF8L2P0C7V8 631 aa19.1■□□□□ 0.65
CNOT3-202ENST00000358389 PCGF6Q9BYE7 350 aa19.02■□□□□ 0.64
CNOT3-202ENST00000358389 SUPT5HO00267 1087 aaKnown RBP19.01■□□□□ 0.63
CNOT3-202ENST00000358389 PPARGC1BQ86YN6 1023 aaKnown RBP18.99■□□□□ 0.63
CNOT3-202ENST00000358389 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
CNOT3-202ENST00000358389 PELP1Q8IZL8 1130 aaKnown RBP18.82■□□□□ 0.6
CNOT3-202ENST00000358389 CHIC1Q5VXU3 224 aa18.35■□□□□ 0.53
CNOT3-202ENST00000358389 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.51
CNOT3-202ENST00000358389 MYO15BQ96JP2 1530 aa18.25■□□□□ 0.51
CNOT3-202ENST00000358389 LOC105371045A0A1W2PR82 267 aa18.18■□□□□ 0.5
CNOT3-202ENST00000358389 MYT1Q01538 1121 aa18.13■□□□□ 0.49
CNOT3-202ENST00000358389 TRIM26Q12899 539 aaPredicted RBP18.13■□□□□ 0.49
CNOT3-202ENST00000358389 ZEB1P37275 1124 aaPredicted RBP18.05■□□□□ 0.48
CNOT3-202ENST00000358389 EHMT2Q96KQ7 1210 aa17.99■□□□□ 0.47
CNOT3-202ENST00000358389 DCAF1Q9Y4B6 1507 aa17.84■□□□□ 0.45
CNOT3-202ENST00000358389 GTF3C3Q9Y5Q9 886 aa17.83■□□□□ 0.45
CNOT3-202ENST00000358389 ACIN1Q9UKV3 1341 aaKnown RBP17.82■□□□□ 0.44
CNOT3-202ENST00000358389 NEUROD1Q13562 356 aa17.79■□□□□ 0.44
CNOT3-202ENST00000358389 CENPBP07199 599 aaPredicted RBP17.79■□□□□ 0.44
CNOT3-202ENST00000358389 FAM9AQ8IZU1 332 aaPredicted RBP17.7■□□□□ 0.42
CNOT3-202ENST00000358389 CCER1Q8TC90 406 aaPredicted RBP17.61■□□□□ 0.41
CNOT3-202ENST00000358389 YTHDC1Q96MU7 727 aaKnown RBP17.6■□□□□ 0.41
CNOT3-202ENST00000358389 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.55■□□□□ 0.4
CNOT3-202ENST00000358389 DIEXFQ68CQ4 756 aaKnown RBP17.55■□□□□ 0.4
CNOT3-202ENST00000358389 CCDC180Q9P1Z9 1646 aa17.54■□□□□ 0.4
CNOT3-202ENST00000358389 TTBK1Q5TCY1 1321 aaPredicted RBP17.43■□□□□ 0.38
CNOT3-202ENST00000358389 TRIM41Q8WV44 630 aa17.42■□□□□ 0.38
CNOT3-202ENST00000358389 ZCCHC6Q5VYS8 1495 aaKnown RBP17.19■□□□□ 0.34
CNOT3-202ENST00000358389 ZNF316A6NFI3 1004 aaPredicted RBP17.08■□□□□ 0.32
CNOT3-202ENST00000358389 MIER1Q8N108 512 aa17.02■□□□□ 0.32
CNOT3-202ENST00000358389 BCL11AQ9H165 835 aa17.02■□□□□ 0.32
CNOT3-202ENST00000358389 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
CNOT3-202ENST00000358389 APLP2Q06481 763 aa16.92■□□□□ 0.3
CNOT3-202ENST00000358389 ANP32EQ9BTT0 268 aa16.9■□□□□ 0.3
CNOT3-202ENST00000358389 HNRNPUL2Q1KMD3 747 aaKnown RBP16.82■□□□□ 0.28
CNOT3-202ENST00000358389 BCANQ96GW7 911 aa16.8■□□□□ 0.28
CNOT3-202ENST00000358389 SUPT16HQ9Y5B9 1047 aaKnown RBP16.78■□□□□ 0.28
CNOT3-202ENST00000358389 CSRNP3Q8WYN3 585 aa16.77■□□□□ 0.27
CNOT3-202ENST00000358389 TSHZ2Q9NRE2 1034 aa16.73■□□□□ 0.27
CNOT3-202ENST00000358389 UBTFP17480 764 aaKnown RBP16.7■□□□□ 0.26
CNOT3-202ENST00000358389 ERICH6Q7L0X2 663 aa16.59■□□□□ 0.25
CNOT3-202ENST00000358389 CLSPNQ9HAW4 1339 aa16.58■□□□□ 0.24
CNOT3-202ENST00000358389 RSF1Q96T23 1441 aaPredicted RBP16.54■□□□□ 0.24
CNOT3-202ENST00000358389 ATP1B4Q9UN42 357 aaPredicted RBP16.53■□□□□ 0.24
CNOT3-202ENST00000358389 NEFLP07196 543 aa16.53■□□□□ 0.24
CNOT3-202ENST00000358389 FKBP8Q14318 412 aa16.52■□□□□ 0.24
CNOT3-202ENST00000358389 ITGAEP38570 1179 aa16.44■□□□□ 0.22
CNOT3-202ENST00000358389 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
CNOT3-202ENST00000358389 RBM19Q9Y4C8 960 aaKnown RBP16.4■□□□□ 0.22
CNOT3-202ENST00000358389 CEP162Q5TB80 1403 aa16.38■□□□□ 0.21
CNOT3-202ENST00000358389 PRKCSHP14314 528 aaPredicted RBP16.34■□□□□ 0.21
CNOT3-202ENST00000358389 KCNH8Q96L42 1107 aa16.33■□□□□ 0.2
CNOT3-202ENST00000358389 ABCC9O60706 1549 aa16.32■□□□□ 0.2
CNOT3-202ENST00000358389 TRIM52Q96A61 297 aa16.25■□□□□ 0.19
CNOT3-202ENST00000358389 WRNQ14191 1432 aaPredicted RBP eCLIP16.23■□□□□ 0.19
CNOT3-202ENST00000358389 SCRIBQ14160 1630 aa16.22■□□□□ 0.19
CNOT3-202ENST00000358389 DDX10Q13206 875 aaKnown RBP16.2■□□□□ 0.18
CNOT3-202ENST00000358389 CDK11AQ9UQ88 783 aaPredicted RBP16.18■□□□□ 0.18
CNOT3-202ENST00000358389 TNIKQ9UKE5 1360 aa16.17■□□□□ 0.18
CNOT3-202ENST00000358389 IRX6P78412 446 aaPredicted RBP16.16■□□□□ 0.18
CNOT3-202ENST00000358389 PABPN1Q86U42 306 aaKnown RBP eCLIP16.14■□□□□ 0.17
CNOT3-202ENST00000358389 MSH5O43196 834 aa16.13■□□□□ 0.17
CNOT3-202ENST00000358389 SOGA1O94964 1423 aa16.11■□□□□ 0.17
CNOT3-202ENST00000358389 DEKP35659 375 aaKnown RBP16.11■□□□□ 0.17
CNOT3-202ENST00000358389 NBR1Q14596 966 aa16.11■□□□□ 0.17
CNOT3-202ENST00000358389 HIRIP3Q9BW71 556 aaPredicted RBP16.07■□□□□ 0.16
CNOT3-202ENST00000358389 CCDC88BA6NC98 1476 aa16.07■□□□□ 0.16
CNOT3-202ENST00000358389 CECR2Q9BXF3 1484 aa16.05■□□□□ 0.16
CNOT3-202ENST00000358389 ANP32CO43423 234 aa16.04■□□□□ 0.16
CNOT3-202ENST00000358389 CNGB1Q14028 1251 aaPredicted RBP16.03■□□□□ 0.16
CNOT3-202ENST00000358389 ANO8Q9HCE9 1232 aaPredicted RBP16.02■□□□□ 0.16
CNOT3-202ENST00000358389 ABCC8Q09428 1581 aa16.01■□□□□ 0.15
CNOT3-202ENST00000358389 MYT1LQ9UL68 1186 aa15.99■□□□□ 0.15
CNOT3-202ENST00000358389 DHX57Q6P158 1386 aaKnown RBP15.98■□□□□ 0.15
CNOT3-202ENST00000358389 CLIP1P30622 1438 aa15.98■□□□□ 0.15
CNOT3-202ENST00000358389 RTL5Q5HYW3 569 aaPredicted RBP15.97■□□□□ 0.15
CNOT3-202ENST00000358389 HNRNPUQ00839 825 aaKnown RBP eCLIP15.95■□□□□ 0.14
CNOT3-202ENST00000358389 MROH2BQ7Z745 1585 aa15.95■□□□□ 0.14
CNOT3-202ENST00000358389 GOLGA3Q08378 1498 aa15.95■□□□□ 0.14
CNOT3-202ENST00000358389 RUSC2Q8N2Y8 1516 aa15.95■□□□□ 0.14
CNOT3-202ENST00000358389 RTN4Q9NQC3 1192 aaKnown RBP15.95■□□□□ 0.14
CNOT3-202ENST00000358389 FANCIQ9NVI1 1328 aa15.93■□□□□ 0.14
CNOT3-202ENST00000358389 POLR3GLQ9BT43 218 aa15.92■□□□□ 0.14
CNOT3-202ENST00000358389 CCDC136Q96JN2 1154 aa15.92■□□□□ 0.14
CNOT3-202ENST00000358389 WIZO95785 1651 aa15.86■□□□□ 0.13
CNOT3-202ENST00000358389 SIN3AQ96ST3 1273 aa15.85■□□□□ 0.13
CNOT3-202ENST00000358389 SALL2Q9Y467 1007 aaPredicted RBP15.85■□□□□ 0.13
CNOT3-202ENST00000358389 EEA1Q15075 1411 aa15.85■□□□□ 0.13
CNOT3-202ENST00000358389 EIF4G1Q04637 1599 aaKnown RBP15.85■□□□□ 0.13
CNOT3-202ENST00000358389 NOP58Q9Y2X3 529 aaKnown RBP15.84■□□□□ 0.13
CNOT3-202ENST00000358389 VPS8Q8N3P4 1428 aa15.83■□□□□ 0.13
CNOT3-202ENST00000358389 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.83■□□□□ 0.12
CNOT3-202ENST00000358389 B4GALNT3Q6L9W6 998 aa15.83■□□□□ 0.12
CNOT3-202ENST00000358389 KANK4Q5T7N3 995 aaPredicted RBP15.81■□□□□ 0.12
CNOT3-202ENST00000358389 CCER2I3L3R5 266 aa15.77■□□□□ 0.12
CNOT3-202ENST00000358389 EIF5BO60841 1220 aaKnown RBP15.77■□□□□ 0.12
CNOT3-202ENST00000358389 ANP32AP39687 249 aaKnown RBP15.77■□□□□ 0.11
CNOT3-202ENST00000358389 FAM50AQ14320 339 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms