RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 NISCHQ9Y2I1 1504 aa38.61■■■■□ 3.77
CPSF3-201ENST00000238112 SHROOM4Q9ULL8 1493 aa32.91■■■□□ 2.86
CPSF3-201ENST00000238112 CCDC180Q9P1Z9 1646 aa32.82■■■□□ 2.84
CPSF3-201ENST00000238112 ZCCHC6Q5VYS8 1495 aaKnown RBP32.68■■■□□ 2.82
CPSF3-201ENST00000238112 SUPT5HO00267 1087 aaKnown RBP32.34■■■□□ 2.77
CPSF3-201ENST00000238112 DCAF8L2P0C7V8 631 aa31.94■■■□□ 2.7
CPSF3-201ENST00000238112 DCAF1Q9Y4B6 1507 aa31.73■■■□□ 2.67
CPSF3-201ENST00000238112 CHIC1Q5VXU3 224 aa31.49■■■□□ 2.63
CPSF3-201ENST00000238112 MYO15BQ96JP2 1530 aa31.35■■■□□ 2.61
CPSF3-201ENST00000238112 ABCC9O60706 1549 aa30.87■■■□□ 2.53
CPSF3-201ENST00000238112 SCRIBQ14160 1630 aa30.73■■■□□ 2.51
CPSF3-201ENST00000238112 HRCP23327 699 aa30.7■■■□□ 2.5
CPSF3-201ENST00000238112 PCGF6Q9BYE7 350 aa30.6■■■□□ 2.49
CPSF3-201ENST00000238112 RSF1Q96T23 1441 aaPredicted RBP30.57■■■□□ 2.48
CPSF3-201ENST00000238112 LOC105371045A0A1W2PR82 267 aa30.51■■■□□ 2.48
CPSF3-201ENST00000238112 NACADO15069 1562 aa30.34■■■□□ 2.45
CPSF3-201ENST00000238112 RB1CC1Q8TDY2 1594 aa30.29■■■□□ 2.44
CPSF3-201ENST00000238112 TRIM41Q8WV44 630 aa30.17■■■□□ 2.42
CPSF3-201ENST00000238112 TRIM26Q12899 539 aaPredicted RBP30.06■■■□□ 2.4
CPSF3-201ENST00000238112 CECR2Q9BXF3 1484 aa30.05■■■□□ 2.4
CPSF3-201ENST00000238112 MROH2BQ7Z745 1585 aa29.98■■■□□ 2.39
CPSF3-201ENST00000238112 PPARGC1BQ86YN6 1023 aaKnown RBP29.95■■■□□ 2.38
CPSF3-201ENST00000238112 FAM9AQ8IZU1 332 aaPredicted RBP29.85■■■□□ 2.37
CPSF3-201ENST00000238112 WIZO95785 1651 aa29.82■■■□□ 2.36
CPSF3-201ENST00000238112 BAZ1AQ9NRL2 1556 aaPredicted RBP29.7■■■□□ 2.35
CPSF3-201ENST00000238112 EHMT2Q96KQ7 1210 aa29.56■■■□□ 2.32
CPSF3-201ENST00000238112 ZEB1P37275 1124 aaPredicted RBP29.51■■■□□ 2.31
CPSF3-201ENST00000238112 EIF4G1Q04637 1599 aaKnown RBP29.47■■■□□ 2.31
CPSF3-201ENST00000238112 TOP2AP11388 1531 aaKnown RBP29.42■■■□□ 2.3
CPSF3-201ENST00000238112 SMARCA4P51532 1647 aa29.39■■■□□ 2.3
CPSF3-201ENST00000238112 UNC13AQ9UPW8 1703 aa29.28■■■□□ 2.28
CPSF3-201ENST00000238112 CCDC88BA6NC98 1476 aa29.26■■■□□ 2.27
CPSF3-201ENST00000238112 SMARCA2P51531 1590 aa29.23■■■□□ 2.27
CPSF3-201ENST00000238112 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
CPSF3-201ENST00000238112 PABPN1Q86U42 306 aaKnown RBP eCLIP28.94■■■□□ 2.22
CPSF3-201ENST00000238112 SOGA1O94964 1423 aa28.94■■■□□ 2.22
CPSF3-201ENST00000238112 BICRAQ9NZM4 1560 aa28.93■■■□□ 2.22
CPSF3-201ENST00000238112 EEA1Q15075 1411 aa28.92■■■□□ 2.22
CPSF3-201ENST00000238112 WRNQ14191 1432 aaPredicted RBP eCLIP28.9■■■□□ 2.22
CPSF3-201ENST00000238112 CEP162Q5TB80 1403 aa28.9■■■□□ 2.22
CPSF3-201ENST00000238112 TNIKQ9UKE5 1360 aa28.86■■■□□ 2.21
CPSF3-201ENST00000238112 PEG3Q9GZU2 1588 aa28.84■■■□□ 2.21
CPSF3-201ENST00000238112 CSRNP3Q8WYN3 585 aa28.83■■■□□ 2.21
CPSF3-201ENST00000238112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.78■■■□□ 2.2
CPSF3-201ENST00000238112 CCER1Q8TC90 406 aaPredicted RBP28.77■■■□□ 2.2
CPSF3-201ENST00000238112 RUSC2Q8N2Y8 1516 aa28.75■■■□□ 2.19
CPSF3-201ENST00000238112 UBTFP17480 764 aaKnown RBP28.73■■■□□ 2.19
CPSF3-201ENST00000238112 GOLGA3Q08378 1498 aa28.7■■■□□ 2.18
CPSF3-201ENST00000238112 TTBK1Q5TCY1 1321 aaPredicted RBP28.65■■■□□ 2.18
CPSF3-201ENST00000238112 ATAD2BQ9ULI0 1458 aa28.61■■■□□ 2.17
CPSF3-201ENST00000238112 BAZ1BQ9UIG0 1483 aaKnown RBP28.57■■■□□ 2.16
CPSF3-201ENST00000238112 SYNJ1O43426 1573 aa28.56■■■□□ 2.16
CPSF3-201ENST00000238112 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
CPSF3-201ENST00000238112 KIF21BO75037 1637 aa28.48■■■□□ 2.15
CPSF3-201ENST00000238112 CLIP1P30622 1438 aa28.36■■■□□ 2.13
CPSF3-201ENST00000238112 SCAF1Q9H7N4 1312 aaKnown RBP28.27■■■□□ 2.12
CPSF3-201ENST00000238112 VPS8Q8N3P4 1428 aa28.25■■■□□ 2.11
CPSF3-201ENST00000238112 RAPGEF2Q9Y4G8 1499 aa28.25■■■□□ 2.11
CPSF3-201ENST00000238112 TOP2BQ02880 1626 aa28.24■■■□□ 2.11
CPSF3-201ENST00000238112 DIEXFQ68CQ4 756 aaKnown RBP28.24■■■□□ 2.11
CPSF3-201ENST00000238112 APLP2Q06481 763 aa28.17■■■□□ 2.1
CPSF3-201ENST00000238112 BIVM-ERCC5R4GMW8 1640 aa28.13■■■□□ 2.09
CPSF3-201ENST00000238112 HNRNPUL2Q1KMD3 747 aaKnown RBP28.1■■■□□ 2.09
CPSF3-201ENST00000238112 HMGXB3Q12766 1538 aa28.08■■■□□ 2.09
CPSF3-201ENST00000238112 RANGAP1P46060 587 aaPredicted RBP28.07■■■□□ 2.08
CPSF3-201ENST00000238112 NCAPD3P42695 1498 aa28.05■■■□□ 2.08
CPSF3-201ENST00000238112 ACIN1Q9UKV3 1341 aaKnown RBP28.05■■■□□ 2.08
CPSF3-201ENST00000238112 ZNF316A6NFI3 1004 aaPredicted RBP28.03■■■□□ 2.08
CPSF3-201ENST00000238112 ERICH3Q5RHP9 1530 aa28.02■■■□□ 2.08
CPSF3-201ENST00000238112 PRXQ9BXM0 1461 aa27.99■■■□□ 2.07
CPSF3-201ENST00000238112 CENPBP07199 599 aaPredicted RBP27.96■■■□□ 2.07
CPSF3-201ENST00000238112 NEUROD1Q13562 356 aa27.96■■■□□ 2.07
CPSF3-201ENST00000238112 CUX1P39880 1505 aa27.92■■■□□ 2.06
CPSF3-201ENST00000238112 PELP1Q8IZL8 1130 aaKnown RBP27.92■■■□□ 2.06
CPSF3-201ENST00000238112 KIF27Q86VH2 1401 aa27.88■■■□□ 2.05
CPSF3-201ENST00000238112 CFTRP13569 1480 aa27.85■■■□□ 2.05
CPSF3-201ENST00000238112 ARAP1Q96P48 1450 aa27.85■■■□□ 2.05
CPSF3-201ENST00000238112 GTF3C3Q9Y5Q9 886 aa27.7■■■□□ 2.03
CPSF3-201ENST00000238112 KANK4Q5T7N3 995 aaPredicted RBP27.69■■■□□ 2.02
CPSF3-201ENST00000238112 CLSPNQ9HAW4 1339 aa27.66■■■□□ 2.02
CPSF3-201ENST00000238112 PRDM2Q13029 1718 aa27.62■■■□□ 2.01
CPSF3-201ENST00000238112 ARHGAP35Q9NRY4 1499 aa27.6■■■□□ 2.01
CPSF3-201ENST00000238112 RRBP1Q9P2E9 1410 aaKnown RBP27.59■■■□□ 2.01
CPSF3-201ENST00000238112 DHX57Q6P158 1386 aaKnown RBP27.59■■■□□ 2.01
CPSF3-201ENST00000238112 MIER1Q8N108 512 aa27.58■■■□□ 2.01
CPSF3-201ENST00000238112 CUX2O14529 1486 aa27.56■■■□□ 2
CPSF3-201ENST00000238112 YTHDC1Q96MU7 727 aaKnown RBP27.54■■■□□ 2
CPSF3-201ENST00000238112 CADPSQ9ULU8 1353 aa27.53■■■□□ 2
CPSF3-201ENST00000238112 IGF1RP08069 1367 aa27.52■■■□□ 2
CPSF3-201ENST00000238112 CCNB3Q8WWL7 1395 aa27.49■■□□□ 1.99
CPSF3-201ENST00000238112 FGD5Q6ZNL6 1462 aa27.43■■□□□ 1.98
CPSF3-201ENST00000238112 CARMIL1Q5VZK9 1371 aa27.42■■□□□ 1.98
CPSF3-201ENST00000238112 MAP3K1Q13233 1512 aa27.36■■□□□ 1.97
CPSF3-201ENST00000238112 TIAM1Q13009 1591 aa27.34■■□□□ 1.97
CPSF3-201ENST00000238112 ITGAEP38570 1179 aa27.33■■□□□ 1.97
CPSF3-201ENST00000238112 FANCD2Q9BXW9 1451 aa27.26■■□□□ 1.95
CPSF3-201ENST00000238112 CC2D2AQ9P2K1 1620 aa27.26■■□□□ 1.95
CPSF3-201ENST00000238112 FHAD1B1AJZ9 1412 aa27.25■■□□□ 1.95
CPSF3-201ENST00000238112 LRRC9Q6ZRR7 1453 aa27.24■■□□□ 1.95
CPSF3-201ENST00000238112 RAB3GAP2Q9H2M9 1393 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms