Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.232e-48■■□□□ 13.6
YBX3P16989 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.192e-48■■□□□ 13.6
YBX3P16989 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.152e-48■■□□□ 13.6
YBX3P16989 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.122e-48■■□□□ 13.6
YBX3P16989 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.342e-48■■□□□ 13.6
YBX3P16989 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.342e-48■■□□□ 13.6
YBX3P16989 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.822e-48■■□□□ 13.6
YBX3P16989 GHDC-206ENST00000586692 542 ntTSL 423.94■■□□□ 1.424e-6■■□□□ 13.6
YBX3P16989 RHOC-217ENST00000527563 579 ntTSL 323.08■■□□□ 1.293e-11■■□□□ 13.6
YBX3P16989 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.27■■□□□ 1.154e-6■■□□□ 13.6
YBX3P16989 GHDC-208ENST00000588352 559 ntTSL 521.87■■□□□ 1.094e-6■■□□□ 13.6
YBX3P16989 GHDC-204ENST00000585375 592 ntTSL 221.52■■□□□ 1.044e-6■■□□□ 13.6
YBX3P16989 GHDC-210ENST00000590249 561 ntTSL 421.08■□□□□ 0.974e-6■■□□□ 13.6
YBX3P16989 GHDC-209ENST00000588762 842 ntTSL 1 (best)19.52■□□□□ 0.724e-6■■□□□ 13.6
YBX3P16989 RHOC-214ENST00000478447 420 ntTSL 218.02■□□□□ 0.483e-11■■□□□ 13.6
YBX3P16989 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.444e-6■■□□□ 13.6
YBX3P16989 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.68■□□□□ 0.424e-6■■□□□ 13.6
YBX3P16989 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.92■□□□□ 0.144e-6■■□□□ 13.6
YBX3P16989 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.74■□□□□ 0.592e-15■■□□□ 13.6
YBX3P16989 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.312e-15■■□□□ 13.6
YBX3P16989 LAMTOR1-206ENST00000541403 566 ntTSL 224.06■■□□□ 1.442e-7■■□□□ 13.6
YBX3P16989 GTF3A-208ENST00000493903 748 ntTSL 35.65□□□□□ -1.59e-9■■□□□ 13.6
YBX3P16989 GUK1-234ENST00000492871 1065 ntTSL 334.09■■■■□ 3.052e-11■■□□□ 13.6
YBX3P16989 GUK1-208ENST00000366728 842 ntTSL 2 BASIC32.76■■■□□ 2.832e-11■■□□□ 13.6
YBX3P16989 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC27.89■■■□□ 2.062e-11■■□□□ 13.6
YBX3P16989 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.272e-11■■□□□ 13.6
YBX3P16989 GUK1-222ENST00000477206 589 ntTSL 222.97■■□□□ 1.272e-11■■□□□ 13.6
YBX3P16989 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.232e-11■■□□□ 13.6
YBX3P16989 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC22.24■■□□□ 1.152e-11■■□□□ 13.6
YBX3P16989 GUK1-217ENST00000465025 783 ntTSL 219.6■□□□□ 0.732e-11■■□□□ 13.6
YBX3P16989 GUK1-232ENST00000486668 738 ntTSL 318.11■□□□□ 0.492e-11■■□□□ 13.6
YBX3P16989 GUK1-219ENST00000470040 2548 ntTSL 215.3■□□□□ 0.042e-11■■□□□ 13.6
YBX3P16989 TRPM4-214ENST00000601347 642 ntTSL 420.16■□□□□ 0.822e-6■■□□□ 13.6
YBX3P16989 TRPM4-209ENST00000598502 3695 ntTSL 1 (best)15.7■□□□□ 0.12e-6■■□□□ 13.6
YBX3P16989 TRPM4-207ENST00000596338 3993 ntTSL 215.26■□□□□ 0.032e-6■■□□□ 13.6
YBX3P16989 TRPM4-211ENST00000598697 3349 ntTSL 215.22■□□□□ 0.032e-6■■□□□ 13.6
YBX3P16989 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.072e-6■■□□□ 13.6
YBX3P16989 TRPM4-205ENST00000595519 3702 ntTSL 1 (best)14.6□□□□□ -0.072e-6■■□□□ 13.6
YBX3P16989 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.64□□□□□ -0.232e-6■■□□□ 13.6
YBX3P16989 GTF3A-206ENST00000470606 1919 ntTSL 29.78□□□□□ -0.843e-8■■□□□ 13.6
YBX3P16989 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.82■■□□□ 1.569e-9■■□□□ 13.6
YBX3P16989 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.529e-9■■□□□ 13.6
YBX3P16989 MTHFD2-207ENST00000488086 483 ntTSL 211.36□□□□□ -0.594e-9■■□□□ 13.6
YBX3P16989 MTHFD2-206ENST00000477455 696 ntTSL 39.12□□□□□ -0.954e-9■■□□□ 13.6
YBX3P16989 MALSU1-205ENST00000481564 625 ntTSL 228.06■■■□□ 2.081e-8■■□□□ 13.6
YBX3P16989 FLNA-217ENST00000498411 368 ntTSL 317.84■□□□□ 0.452e-11■■□□□ 13.6
YBX3P16989 ZNF106-211ENST00000569648 788 ntTSL 314.63□□□□□ -0.071e-6■■□□□ 13.6
YBX3P16989 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC13.23□□□□□ -0.291e-6■■□□□ 13.6
YBX3P16989 ZNF106-203ENST00000565380 5677 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-6■■□□□ 13.6
YBX3P16989 ZNF106-204ENST00000565500 4733 ntTSL 1 (best)8.3□□□□□ -1.081e-6■■□□□ 13.6
YBX3P16989 PPP4C-206ENST00000563597 815 ntTSL 333.05■■■□□ 2.881e-9■■□□□ 13.6
YBX3P16989 PPP4C-210ENST00000567040 879 ntTSL 223.87■■□□□ 1.411e-9■■□□□ 13.6
YBX3P16989 RPLP0-215ENST00000549242 518 ntTSL 214.89□□□□□ -0.038e-14■■□□□ 13.6
YBX3P16989 RPLP0-212ENST00000548551 543 ntTSL 213.76□□□□□ -0.218e-14■■□□□ 13.6
YBX3P16989 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.862e-7■■□□□ 13.6
YBX3P16989 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.952e-8■■□□□ 13.6
YBX3P16989 PLSCR4-208ENST00000476202 814 ntTSL 519.07■□□□□ 0.642e-8■■□□□ 13.6
YBX3P16989 PLSCR4-205ENST00000460350 1054 ntTSL 516.18■□□□□ 0.182e-8■■□□□ 13.6
YBX3P16989 PLSCR4-202ENST00000383083 3033 ntTSL 5 BASIC14.95□□□□□ -0.022e-8■■□□□ 13.6
YBX3P16989 PLSCR4-210ENST00000493382 1375 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.332e-8■■□□□ 13.6
YBX3P16989 PLSCR4-201ENST00000354952 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.442e-8■■□□□ 13.6
YBX3P16989 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC11.82□□□□□ -0.522e-8■■□□□ 13.6
YBX3P16989 PLSCR4-211ENST00000498625 593 ntTSL 410.41□□□□□ -0.742e-8■■□□□ 13.6
YBX3P16989 PLSCR4-209ENST00000481701 683 ntTSL 49.7□□□□□ -0.862e-8■■□□□ 13.6
YBX3P16989 PLSCR4-207ENST00000475019 807 ntTSL 36.9□□□□□ -1.32e-8■■□□□ 13.6
YBX3P16989 PLSCR4-206ENST00000460885 609 ntTSL 35.85□□□□□ -1.472e-8■■□□□ 13.6
YBX3P16989 ATP5L-204ENST00000529460 457 ntTSL 314.3□□□□□ -0.123e-38■■□□□ 13.6
YBX3P16989 ATP5L-208ENST00000534385 623 ntTSL 29.67□□□□□ -0.863e-38■■□□□ 13.6
YBX3P16989 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.657e-9■■□□□ 13.6
YBX3P16989 UBE2M-203ENST00000595957 734 ntTSL 218.21■□□□□ 0.517e-9■■□□□ 13.6
YBX3P16989 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.052e-6■■□□□ 13.6
YBX3P16989 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.72□□□□□ -0.052e-6■■□□□ 13.6
YBX3P16989 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC8.2□□□□□ -1.12e-6■■□□□ 13.6
YBX3P16989 TM9SF3-205ENST00000485093 407 ntTSL 56□□□□□ -1.452e-14■■□□□ 13.6
YBX3P16989 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.051e-6■■□□□ 13.6
YBX3P16989 CUL1-203ENST00000602748 3054 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.291e-6■■□□□ 13.6
YBX3P16989 GAS5-204ENST00000421068 1060 ntTSL 27.59□□□□□ -1.192e-39■■□□□ 13.6
YBX3P16989 YBX3-211ENST00000541351 717 ntTSL 414.13□□□□□ -0.159e-7■■□□□ 13.6
YBX3P16989 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.241e-8■■□□□ 13.6
YBX3P16989 MS4A3-207ENST00000528952 923 ntTSL 27.51□□□□□ -1.215e-9■■□□□ 13.6
YBX3P16989 PKN1-213ENST00000591461 867 ntTSL 319.1■□□□□ 0.659e-7■■□□□ 13.6
YBX3P16989 PKN1-206ENST00000586237 529 ntTSL 518.95■□□□□ 0.629e-7■■□□□ 13.6
YBX3P16989 PLOD1-203ENST00000429000 886 ntTSL 520.71■□□□□ 0.915e-10■■□□□ 13.6
YBX3P16989 PLOD1-208ENST00000485046 991 ntTSL 518.88■□□□□ 0.615e-10■■□□□ 13.6
YBX3P16989 ADD1-210ENST00000503455 3206 ntTSL 5 BASIC12.49□□□□□ -0.414e-8■■□□□ 13.6
YBX3P16989 ADD1-217ENST00000513328 3107 ntTSL 5 BASIC11.38□□□□□ -0.594e-8■■□□□ 13.6
YBX3P16989 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.182e-8■■□□□ 13.6
YBX3P16989 SNRPD3-204ENST00000439775 640 ntTSL 321.9■■□□□ 1.16e-7■■□□□ 13.6
YBX3P16989 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.616e-7■■□□□ 13.6
YBX3P16989 SNRPD3-203ENST00000404603 715 ntTSL 510.31□□□□□ -0.766e-7■■□□□ 13.6
YBX3P16989 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC9.15□□□□□ -0.946e-7■■□□□ 13.6
YBX3P16989 CKB-215ENST00000557287 565 ntTSL 221.23■□□□□ 0.994e-10■■□□□ 13.6
YBX3P16989 MSH6-215ENST00000622629 4324 ntTSL 5 BASIC13.18□□□□□ -0.31e-10■■□□□ 13.6
YBX3P16989 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.17□□□□□ -0.31e-10■■□□□ 13.6
YBX3P16989 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC13.13□□□□□ -0.311e-10■■□□□ 13.6
YBX3P16989 MSH6-213ENST00000614496 4150 ntTSL 1 (best) BASIC12.79□□□□□ -0.361e-10■■□□□ 13.6
YBX3P16989 MSH6-204ENST00000445503 4158 ntTSL 1 (best)12.1□□□□□ -0.471e-10■■□□□ 13.6
YBX3P16989 MSH6-201ENST00000234420 7476 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.651e-10■■□□□ 13.6
YBX3P16989 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC8.64□□□□□ -1.031e-10■■□□□ 13.6
YBX3P16989 ESD-205ENST00000495654 701 ntTSL 56.06□□□□□ -1.444e-7■■□□□ 13.6
Retrieved 100 of 29,075 protein–RNA pairs in 267.6 ms