RNA–Protein interactions for RNA: ENST00000590249.5

GHDC-210, Transcript of GH3 domain containing, humanhuman

TSL 4

Gene GHDC, Length 561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GHDC-210ENST00000590249 NISCHQ9Y2I1 1504 aa39.05■■■■□ 3.84
GHDC-210ENST00000590249 CCDC180Q9P1Z9 1646 aa34.95■■■■□ 3.19
GHDC-210ENST00000590249 ABCC9O60706 1549 aa34.6■■■■□ 3.13
GHDC-210ENST00000590249 RB1CC1Q8TDY2 1594 aa33.06■■■□□ 2.88
GHDC-210ENST00000590249 NACADO15069 1562 aa32.91■■■□□ 2.86
GHDC-210ENST00000590249 DCAF8L2P0C7V8 631 aa32.69■■■□□ 2.82
GHDC-210ENST00000590249 MYO15BQ96JP2 1530 aa32.55■■■□□ 2.8
GHDC-210ENST00000590249 ZCCHC6Q5VYS8 1495 aaKnown RBP32.48■■■□□ 2.79
GHDC-210ENST00000590249 UNC13AQ9UPW8 1703 aa32.43■■■□□ 2.78
GHDC-210ENST00000590249 DCAF1Q9Y4B6 1507 aa32.26■■■□□ 2.76
GHDC-210ENST00000590249 PABPN1Q86U42 306 aaKnown RBP eCLIP32.21■■■□□ 2.75
GHDC-210ENST00000590249 BICRAQ9NZM4 1560 aa32.15■■■□□ 2.74
GHDC-210ENST00000590249 DNAJC5BQ9UF47 199 aa32.13■■■□□ 2.73
GHDC-210ENST00000590249 SCRIBQ14160 1630 aa31.89■■■□□ 2.7
GHDC-210ENST00000590249 SHROOM4Q9ULL8 1493 aa31.67■■■□□ 2.66
GHDC-210ENST00000590249 EIF4G1Q04637 1599 aaKnown RBP31.3■■■□□ 2.6
GHDC-210ENST00000590249 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
GHDC-210ENST00000590249 CECR2Q9BXF3 1484 aa31.11■■■□□ 2.57
GHDC-210ENST00000590249 SMARCA4P51532 1647 aa30.44■■■□□ 2.46
GHDC-210ENST00000590249 NCAPD3P42695 1498 aa30.35■■■□□ 2.45
GHDC-210ENST00000590249 ATAD2BQ9ULI0 1458 aa30.33■■■□□ 2.45
GHDC-210ENST00000590249 BAZ1AQ9NRL2 1556 aaPredicted RBP30.28■■■□□ 2.44
GHDC-210ENST00000590249 SMARCA2P51531 1590 aa30.27■■■□□ 2.44
GHDC-210ENST00000590249 HMGXB3Q12766 1538 aa30.22■■■□□ 2.43
GHDC-210ENST00000590249 MROH2BQ7Z745 1585 aa30.13■■■□□ 2.41
GHDC-210ENST00000590249 PEG3Q9GZU2 1588 aa30.11■■■□□ 2.41
GHDC-210ENST00000590249 BAZ1BQ9UIG0 1483 aaKnown RBP30.06■■■□□ 2.4
GHDC-210ENST00000590249 NESP48681 1621 aa29.84■■■□□ 2.37
GHDC-210ENST00000590249 ERCC6Q03468 1493 aa29.81■■■□□ 2.36
GHDC-210ENST00000590249 WIZO95785 1651 aa29.81■■■□□ 2.36
GHDC-210ENST00000590249 LAMC3Q9Y6N6 1575 aa29.65■■■□□ 2.34
GHDC-210ENST00000590249 CUX2O14529 1486 aa29.65■■■□□ 2.34
GHDC-210ENST00000590249 RSF1Q96T23 1441 aaPredicted RBP29.58■■■□□ 2.33
GHDC-210ENST00000590249 THOC2Q8NI27 1593 aaKnown RBP29.52■■■□□ 2.32
GHDC-210ENST00000590249 KIF21AQ7Z4S6 1674 aa29.51■■■□□ 2.31
GHDC-210ENST00000590249 TOP2AP11388 1531 aaKnown RBP29.43■■■□□ 2.3
GHDC-210ENST00000590249 CADPSQ9ULU8 1353 aa29.42■■■□□ 2.3
GHDC-210ENST00000590249 PDS5BQ9NTI5 1447 aa29.4■■■□□ 2.3
GHDC-210ENST00000590249 CFTRP13569 1480 aa29.2■■■□□ 2.26
GHDC-210ENST00000590249 MRC2Q9UBG0 1479 aa29.2■■■□□ 2.26
GHDC-210ENST00000590249 DNAJC5Q9H3Z4 198 aa29.19■■■□□ 2.26
GHDC-210ENST00000590249 WDR62O43379 1518 aa29.15■■■□□ 2.26
GHDC-210ENST00000590249 FANCD2Q9BXW9 1451 aa29.14■■■□□ 2.26
GHDC-210ENST00000590249 CEP164Q9UPV0 1460 aa29.14■■■□□ 2.26
GHDC-210ENST00000590249 CCDC88BA6NC98 1476 aa29.05■■■□□ 2.24
GHDC-210ENST00000590249 PRDM2Q13029 1718 aa29.04■■■□□ 2.24
GHDC-210ENST00000590249 URB2Q14146 1524 aaKnown RBP28.91■■■□□ 2.22
GHDC-210ENST00000590249 TOPBP1Q92547 1522 aa28.64■■■□□ 2.18
GHDC-210ENST00000590249 DNMBPQ6XZF7 1577 aa28.58■■■□□ 2.17
GHDC-210ENST00000590249 IFT140Q96RY7 1462 aa28.53■■■□□ 2.16
GHDC-210ENST00000590249 ABCC8Q09428 1581 aa28.51■■■□□ 2.15
GHDC-210ENST00000590249 ZNF608Q9ULD9 1512 aaPredicted RBP28.5■■■□□ 2.15
GHDC-210ENST00000590249 SUPT5HO00267 1087 aaKnown RBP28.45■■■□□ 2.14
GHDC-210ENST00000590249 EIF4G3O43432 1585 aaKnown RBP28.4■■■□□ 2.14
GHDC-210ENST00000590249 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
GHDC-210ENST00000590249 POLA1P09884 1462 aaPredicted RBP28.37■■■□□ 2.13
GHDC-210ENST00000590249 CUX1P39880 1505 aa28.29■■■□□ 2.12
GHDC-210ENST00000590249 RAD54L2Q9Y4B4 1467 aa28.26■■■□□ 2.11
GHDC-210ENST00000590249 OSCARQ8IYS5 282 aa28.25■■■□□ 2.11
GHDC-210ENST00000590249 FGD5Q6ZNL6 1462 aa28.25■■■□□ 2.11
GHDC-210ENST00000590249 AQRO60306 1485 aaKnown RBP eCLIP28.24■■■□□ 2.11
GHDC-210ENST00000590249 SOGA1O94964 1423 aa28.18■■■□□ 2.1
GHDC-210ENST00000590249 CHD1O14646 1710 aa28.15■■■□□ 2.1
GHDC-210ENST00000590249 TDRD9Q8NDG6 1382 aaKnown RBP28.11■■■□□ 2.09
GHDC-210ENST00000590249 WDR97A6NE52 1622 aa28.1■■■□□ 2.09
GHDC-210ENST00000590249 TRIM41Q8WV44 630 aa28.07■■■□□ 2.08
GHDC-210ENST00000590249 RIMBP3CA6NJZ7 1639 aa28.02■■■□□ 2.08
GHDC-210ENST00000590249 RIMBP3BA6NNM3 1639 aa28.02■■■□□ 2.08
GHDC-210ENST00000590249 RIMBP3Q9UFD9 1639 aa28.02■■■□□ 2.08
GHDC-210ENST00000590249 SNAPC4Q5SXM2 1469 aa28.01■■■□□ 2.07
GHDC-210ENST00000590249 PBRM1Q86U86 1689 aa27.94■■■□□ 2.06
GHDC-210ENST00000590249 BIVM-ERCC5R4GMW8 1640 aa27.94■■■□□ 2.06
GHDC-210ENST00000590249 ARHGEF11O15085 1522 aa27.93■■■□□ 2.06
GHDC-210ENST00000590249 GRIN2BQ13224 1484 aa27.93■■■□□ 2.06
GHDC-210ENST00000590249 SYNJ1O43426 1573 aa27.93■■■□□ 2.06
GHDC-210ENST00000590249 ABCA10Q8WWZ4 1543 aa27.92■■■□□ 2.06
GHDC-210ENST00000590249 TOP2BQ02880 1626 aa27.92■■■□□ 2.06
GHDC-210ENST00000590249 ABCA5Q8WWZ7 1642 aa27.92■■■□□ 2.06
GHDC-210ENST00000590249 MAGI1Q96QZ7 1491 aaPredicted RBP27.91■■■□□ 2.06
GHDC-210ENST00000590249 FBLN2P98095 1184 aa27.91■■■□□ 2.06
GHDC-210ENST00000590249 WRNQ14191 1432 aaPredicted RBP eCLIP27.89■■■□□ 2.06
GHDC-210ENST00000590249 GAPVD1Q14C86 1478 aa27.88■■■□□ 2.05
GHDC-210ENST00000590249 SYNJ2O15056 1496 aa27.81■■■□□ 2.04
GHDC-210ENST00000590249 CLASP1Q7Z460 1538 aa27.79■■■□□ 2.04
GHDC-210ENST00000590249 CHMP7Q8WUX9 453 aaPredicted RBP27.75■■■□□ 2.03
GHDC-210ENST00000590249 ARAP1Q96P48 1450 aa27.7■■■□□ 2.03
GHDC-210ENST00000590249 ADAMTS12P58397 1594 aa27.69■■■□□ 2.02
GHDC-210ENST00000590249 GRIN2AQ12879 1464 aa27.6■■■□□ 2.01
GHDC-210ENST00000590249 CYB5RLQ6IPT4 315 aa27.6■■■□□ 2.01
GHDC-210ENST00000590249 ERICH3Q5RHP9 1530 aa27.57■■■□□ 2
GHDC-210ENST00000590249 CEP170Q5SW79 1584 aa27.54■■■□□ 2
GHDC-210ENST00000590249 FHAD1B1AJZ9 1412 aa27.52■■■□□ 2
GHDC-210ENST00000590249 NUP160Q12769 1436 aa27.5■■□□□ 1.99
GHDC-210ENST00000590249 ERCC6L2Q5T890 1561 aa27.41■■□□□ 1.98
GHDC-210ENST00000590249 SHROOM2Q13796 1616 aa27.38■■□□□ 1.97
GHDC-210ENST00000590249 KIF27Q86VH2 1401 aa27.31■■□□□ 1.96
GHDC-210ENST00000590249 RUSC2Q8N2Y8 1516 aa27.3■■□□□ 1.96
GHDC-210ENST00000590249 CUL7Q14999 1698 aa27.27■■□□□ 1.96
GHDC-210ENST00000590249 IGF1RP08069 1367 aa27.24■■□□□ 1.95
GHDC-210ENST00000590249 TRHP20396 242 aaPredicted RBP27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms