RNA–Protein interactions for RNA: ENST00000439775.1

SNRPD3-204, Transcript of small nuclear ribonucleoprotein D3 polypeptide, humanhuman

TSL 3

Gene SNRPD3, Length 640 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPD3-204ENST00000439775 NISCHQ9Y2I1 1504 aa40.52■■■■■ 4.08
SNRPD3-204ENST00000439775 CCDC180Q9P1Z9 1646 aa36.28■■■■□ 3.4
SNRPD3-204ENST00000439775 ABCC9O60706 1549 aa35.91■■■■□ 3.34
SNRPD3-204ENST00000439775 RB1CC1Q8TDY2 1594 aa34.37■■■■□ 3.09
SNRPD3-204ENST00000439775 NACADO15069 1562 aa34.22■■■■□ 3.07
SNRPD3-204ENST00000439775 MYO15BQ96JP2 1530 aa33.9■■■■□ 3.02
SNRPD3-204ENST00000439775 DCAF8L2P0C7V8 631 aa33.9■■■■□ 3.02
SNRPD3-204ENST00000439775 ZCCHC6Q5VYS8 1495 aaKnown RBP33.68■■■□□ 2.98
SNRPD3-204ENST00000439775 DCAF1Q9Y4B6 1507 aa33.56■■■□□ 2.96
SNRPD3-204ENST00000439775 UNC13AQ9UPW8 1703 aa33.53■■■□□ 2.96
SNRPD3-204ENST00000439775 PABPN1Q86U42 306 aaKnown RBP eCLIP33.42■■■□□ 2.94
SNRPD3-204ENST00000439775 DNAJC5BQ9UF47 199 aa33.38■■■□□ 2.93
SNRPD3-204ENST00000439775 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
SNRPD3-204ENST00000439775 SHROOM4Q9ULL8 1493 aa33.04■■■□□ 2.88
SNRPD3-204ENST00000439775 SCRIBQ14160 1630 aa33■■■□□ 2.87
SNRPD3-204ENST00000439775 EIF4G1Q04637 1599 aaKnown RBP32.51■■■□□ 2.79
SNRPD3-204ENST00000439775 CC2D2AQ9P2K1 1620 aa32.48■■■□□ 2.79
SNRPD3-204ENST00000439775 CECR2Q9BXF3 1484 aa32.35■■■□□ 2.77
SNRPD3-204ENST00000439775 NCAPD3P42695 1498 aa31.58■■■□□ 2.65
SNRPD3-204ENST00000439775 SMARCA4P51532 1647 aa31.55■■■□□ 2.64
SNRPD3-204ENST00000439775 ATAD2BQ9ULI0 1458 aa31.51■■■□□ 2.63
SNRPD3-204ENST00000439775 SMARCA2P51531 1590 aa31.46■■■□□ 2.63
SNRPD3-204ENST00000439775 BAZ1AQ9NRL2 1556 aaPredicted RBP31.46■■■□□ 2.63
SNRPD3-204ENST00000439775 HMGXB3Q12766 1538 aa31.4■■■□□ 2.62
SNRPD3-204ENST00000439775 PEG3Q9GZU2 1588 aa31.3■■■□□ 2.6
SNRPD3-204ENST00000439775 BAZ1BQ9UIG0 1483 aaKnown RBP31.21■■■□□ 2.59
SNRPD3-204ENST00000439775 MROH2BQ7Z745 1585 aa31.19■■■□□ 2.58
SNRPD3-204ENST00000439775 ERCC6Q03468 1493 aa31.01■■■□□ 2.55
SNRPD3-204ENST00000439775 NESP48681 1621 aa30.92■■■□□ 2.54
SNRPD3-204ENST00000439775 CUX2O14529 1486 aa30.91■■■□□ 2.54
SNRPD3-204ENST00000439775 LAMC3Q9Y6N6 1575 aa30.83■■■□□ 2.53
SNRPD3-204ENST00000439775 WIZO95785 1651 aa30.81■■■□□ 2.52
SNRPD3-204ENST00000439775 RSF1Q96T23 1441 aaPredicted RBP30.66■■■□□ 2.5
SNRPD3-204ENST00000439775 PDS5BQ9NTI5 1447 aa30.63■■■□□ 2.49
SNRPD3-204ENST00000439775 THOC2Q8NI27 1593 aaKnown RBP30.62■■■□□ 2.49
SNRPD3-204ENST00000439775 CADPSQ9ULU8 1353 aa30.61■■■□□ 2.49
SNRPD3-204ENST00000439775 KIF21AQ7Z4S6 1674 aa30.55■■■□□ 2.48
SNRPD3-204ENST00000439775 TOP2AP11388 1531 aaKnown RBP30.52■■■□□ 2.48
SNRPD3-204ENST00000439775 DNAJC5Q9H3Z4 198 aa30.49■■■□□ 2.47
SNRPD3-204ENST00000439775 CFTRP13569 1480 aa30.35■■■□□ 2.45
SNRPD3-204ENST00000439775 MRC2Q9UBG0 1479 aa30.35■■■□□ 2.45
SNRPD3-204ENST00000439775 WDR62O43379 1518 aa30.28■■■□□ 2.44
SNRPD3-204ENST00000439775 CEP164Q9UPV0 1460 aa30.28■■■□□ 2.44
SNRPD3-204ENST00000439775 FANCD2Q9BXW9 1451 aa30.26■■■□□ 2.44
SNRPD3-204ENST00000439775 CCDC88BA6NC98 1476 aa30.12■■■□□ 2.41
SNRPD3-204ENST00000439775 PRDM2Q13029 1718 aa30.05■■■□□ 2.4
SNRPD3-204ENST00000439775 URB2Q14146 1524 aaKnown RBP29.99■■■□□ 2.39
SNRPD3-204ENST00000439775 TOPBP1Q92547 1522 aa29.72■■■□□ 2.35
SNRPD3-204ENST00000439775 ABCC8Q09428 1581 aa29.7■■■□□ 2.35
SNRPD3-204ENST00000439775 IFT140Q96RY7 1462 aa29.68■■■□□ 2.34
SNRPD3-204ENST00000439775 DNMBPQ6XZF7 1577 aa29.65■■■□□ 2.34
SNRPD3-204ENST00000439775 ZNF608Q9ULD9 1512 aaPredicted RBP29.55■■■□□ 2.32
SNRPD3-204ENST00000439775 OSCARQ8IYS5 282 aa29.46■■■□□ 2.31
SNRPD3-204ENST00000439775 TARBP1Q13395 1621 aaKnown RBP29.45■■■□□ 2.3
SNRPD3-204ENST00000439775 EIF4G3O43432 1585 aaKnown RBP29.44■■■□□ 2.3
SNRPD3-204ENST00000439775 POLA1P09884 1462 aaPredicted RBP29.44■■■□□ 2.3
SNRPD3-204ENST00000439775 SUPT5HO00267 1087 aaKnown RBP29.4■■■□□ 2.3
SNRPD3-204ENST00000439775 CUX1P39880 1505 aa29.3■■■□□ 2.28
SNRPD3-204ENST00000439775 AQRO60306 1485 aaKnown RBP eCLIP29.3■■■□□ 2.282e-6■■■□□ 18.1
SNRPD3-204ENST00000439775 FGD5Q6ZNL6 1462 aa29.29■■■□□ 2.28
SNRPD3-204ENST00000439775 RAD54L2Q9Y4B4 1467 aa29.28■■■□□ 2.28
SNRPD3-204ENST00000439775 SOGA1O94964 1423 aa29.28■■■□□ 2.28
SNRPD3-204ENST00000439775 WDR97A6NE52 1622 aa29.23■■■□□ 2.27
SNRPD3-204ENST00000439775 TRIM41Q8WV44 630 aa29.2■■■□□ 2.26
SNRPD3-204ENST00000439775 TDRD9Q8NDG6 1382 aaKnown RBP29.16■■■□□ 2.26
SNRPD3-204ENST00000439775 CHD1O14646 1710 aa29.12■■■□□ 2.25
SNRPD3-204ENST00000439775 RIMBP3CA6NJZ7 1639 aa29.08■■■□□ 2.25
SNRPD3-204ENST00000439775 RIMBP3BA6NNM3 1639 aa29.08■■■□□ 2.25
SNRPD3-204ENST00000439775 RIMBP3Q9UFD9 1639 aa29.08■■■□□ 2.25
SNRPD3-204ENST00000439775 SNAPC4Q5SXM2 1469 aa29.05■■■□□ 2.24
SNRPD3-204ENST00000439775 ARHGEF11O15085 1522 aa29.04■■■□□ 2.24
SNRPD3-204ENST00000439775 GRIN2BQ13224 1484 aa29.03■■■□□ 2.24
SNRPD3-204ENST00000439775 MAGI1Q96QZ7 1491 aaPredicted RBP29.03■■■□□ 2.24
SNRPD3-204ENST00000439775 ABCA10Q8WWZ4 1543 aa29■■■□□ 2.23
SNRPD3-204ENST00000439775 FBLN2P98095 1184 aa28.99■■■□□ 2.23
SNRPD3-204ENST00000439775 GAPVD1Q14C86 1478 aa28.95■■■□□ 2.22
SNRPD3-204ENST00000439775 TOP2BQ02880 1626 aa28.94■■■□□ 2.22
SNRPD3-204ENST00000439775 ABCA5Q8WWZ7 1642 aa28.94■■■□□ 2.22
SNRPD3-204ENST00000439775 BIVM-ERCC5R4GMW8 1640 aa28.94■■■□□ 2.22
SNRPD3-204ENST00000439775 WRNQ14191 1432 aaPredicted RBP eCLIP28.93■■■□□ 2.22
SNRPD3-204ENST00000439775 PBRM1Q86U86 1689 aa28.92■■■□□ 2.22
SNRPD3-204ENST00000439775 SYNJ2O15056 1496 aa28.91■■■□□ 2.22
SNRPD3-204ENST00000439775 SYNJ1O43426 1573 aa28.88■■■□□ 2.21
SNRPD3-204ENST00000439775 CHMP7Q8WUX9 453 aaPredicted RBP28.87■■■□□ 2.21
SNRPD3-204ENST00000439775 CLASP1Q7Z460 1538 aa28.86■■■□□ 2.21
SNRPD3-204ENST00000439775 ARAP1Q96P48 1450 aa28.77■■■□□ 2.2
SNRPD3-204ENST00000439775 CYB5RLQ6IPT4 315 aa28.72■■■□□ 2.19
SNRPD3-204ENST00000439775 ADAMTS12P58397 1594 aa28.7■■■□□ 2.18
SNRPD3-204ENST00000439775 GRIN2AQ12879 1464 aa28.66■■■□□ 2.18
SNRPD3-204ENST00000439775 ERICH3Q5RHP9 1530 aa28.65■■■□□ 2.18
SNRPD3-204ENST00000439775 FHAD1B1AJZ9 1412 aa28.61■■■□□ 2.17
SNRPD3-204ENST00000439775 NUP160Q12769 1436 aa28.57■■■□□ 2.16
SNRPD3-204ENST00000439775 CEP170Q5SW79 1584 aa28.54■■■□□ 2.16
SNRPD3-204ENST00000439775 SHROOM2Q13796 1616 aa28.41■■■□□ 2.14
SNRPD3-204ENST00000439775 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
SNRPD3-204ENST00000439775 KIF27Q86VH2 1401 aa28.36■■■□□ 2.13
SNRPD3-204ENST00000439775 RUSC2Q8N2Y8 1516 aa28.29■■■□□ 2.12
SNRPD3-204ENST00000439775 IGF1RP08069 1367 aa28.29■■■□□ 2.12
SNRPD3-204ENST00000439775 TRHP20396 242 aaPredicted RBP28.29■■■□□ 2.12
SNRPD3-204ENST00000439775 CUL7Q14999 1698 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms