RNA–Protein interactions for RNA: ENST00000470606.5

GTF3A-206, Transcript of general transcription factor IIIA, humanhuman

TSL 2

Gene GTF3A, Length 1,919 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-206ENST00000470606 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
GTF3A-206ENST00000470606 CCDC180Q9P1Z9 1646 aa16.73■□□□□ 0.27
GTF3A-206ENST00000470606 ZCCHC6Q5VYS8 1495 aaKnown RBP16.11■□□□□ 0.17
GTF3A-206ENST00000470606 ABCC9O60706 1549 aa15.94■□□□□ 0.14
GTF3A-206ENST00000470606 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
GTF3A-206ENST00000470606 DCAF1Q9Y4B6 1507 aa15.83■□□□□ 0.12
GTF3A-206ENST00000470606 MYO15BQ96JP2 1530 aa15.66■□□□□ 0.1
GTF3A-206ENST00000470606 SHROOM4Q9ULL8 1493 aa15.65■□□□□ 0.1
GTF3A-206ENST00000470606 NACADO15069 1562 aa15.59■□□□□ 0.09
GTF3A-206ENST00000470606 RB1CC1Q8TDY2 1594 aa15.46■□□□□ 0.07
GTF3A-206ENST00000470606 SCRIBQ14160 1630 aa15.43■□□□□ 0.06
GTF3A-206ENST00000470606 UNC13AQ9UPW8 1703 aa15.28■□□□□ 0.04
GTF3A-206ENST00000470606 BICRAQ9NZM4 1560 aa15.11■□□□□ 0.01
GTF3A-206ENST00000470606 PABPN1Q86U42 306 aaKnown RBP eCLIP15.05■□□□□ -0
GTF3A-206ENST00000470606 CECR2Q9BXF3 1484 aa14.99□□□□□ -0.01
GTF3A-206ENST00000470606 SUPT5HO00267 1087 aaKnown RBP14.99□□□□□ -0.01
GTF3A-206ENST00000470606 RSF1Q96T23 1441 aaPredicted RBP14.89□□□□□ -0.03
GTF3A-206ENST00000470606 MROH2BQ7Z745 1585 aa14.87□□□□□ -0.03
GTF3A-206ENST00000470606 BAZ1AQ9NRL2 1556 aaPredicted RBP14.79□□□□□ -0.04
GTF3A-206ENST00000470606 SMARCA4P51532 1647 aa14.77□□□□□ -0.04
GTF3A-206ENST00000470606 WIZO95785 1651 aa14.75□□□□□ -0.05
GTF3A-206ENST00000470606 EIF4G1Q04637 1599 aaKnown RBP14.62□□□□□ -0.07
GTF3A-206ENST00000470606 PEG3Q9GZU2 1588 aa14.59□□□□□ -0.07
GTF3A-206ENST00000470606 ATAD2BQ9ULI0 1458 aa14.55□□□□□ -0.08
GTF3A-206ENST00000470606 TOP2AP11388 1531 aaKnown RBP14.53□□□□□ -0.08
GTF3A-206ENST00000470606 SMARCA2P51531 1590 aa14.49□□□□□ -0.09
GTF3A-206ENST00000470606 BAZ1BQ9UIG0 1483 aaKnown RBP14.43□□□□□ -0.1
GTF3A-206ENST00000470606 CC2D2AQ9P2K1 1620 aa14.43□□□□□ -0.1
GTF3A-206ENST00000470606 NCAPD3P42695 1498 aa14.42□□□□□ -0.1
GTF3A-206ENST00000470606 CCDC88BA6NC98 1476 aa14.42□□□□□ -0.1
GTF3A-206ENST00000470606 HMGXB3Q12766 1538 aa14.38□□□□□ -0.11
GTF3A-206ENST00000470606 CHIC1Q5VXU3 224 aa14.33□□□□□ -0.12
GTF3A-206ENST00000470606 DNAJC5BQ9UF47 199 aa14.23□□□□□ -0.13
GTF3A-206ENST00000470606 ABCC8Q09428 1581 aa14.12□□□□□ -0.15
GTF3A-206ENST00000470606 CFTRP13569 1480 aa14.1□□□□□ -0.15
GTF3A-206ENST00000470606 TRIM41Q8WV44 630 aa14.05□□□□□ -0.16
GTF3A-206ENST00000470606 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
GTF3A-206ENST00000470606 NESP48681 1621 aa14.02□□□□□ -0.16
GTF3A-206ENST00000470606 PRDM2Q13029 1718 aa14□□□□□ -0.17
GTF3A-206ENST00000470606 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
GTF3A-206ENST00000470606 WRNQ14191 1432 aaPredicted RBP eCLIP13.97□□□□□ -0.17
GTF3A-206ENST00000470606 LAMC3Q9Y6N6 1575 aa13.91□□□□□ -0.18
GTF3A-206ENST00000470606 CUX1P39880 1505 aa13.9□□□□□ -0.18
GTF3A-206ENST00000470606 FANCD2Q9BXW9 1451 aa13.89□□□□□ -0.19
GTF3A-206ENST00000470606 TOP2BQ02880 1626 aa13.89□□□□□ -0.19
GTF3A-206ENST00000470606 BIVM-ERCC5R4GMW8 1640 aa13.87□□□□□ -0.19
GTF3A-206ENST00000470606 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
GTF3A-206ENST00000470606 SOGA1O94964 1423 aa13.83□□□□□ -0.2
GTF3A-206ENST00000470606 RUSC2Q8N2Y8 1516 aa13.83□□□□□ -0.2
GTF3A-206ENST00000470606 KIF21AQ7Z4S6 1674 aa13.82□□□□□ -0.2
GTF3A-206ENST00000470606 LOC105371045A0A1W2PR82 267 aa13.82□□□□□ -0.2
GTF3A-206ENST00000470606 PDS5BQ9NTI5 1447 aa13.78□□□□□ -0.2
GTF3A-206ENST00000470606 CEP164Q9UPV0 1460 aa13.78□□□□□ -0.2
GTF3A-206ENST00000470606 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.21
GTF3A-206ENST00000470606 TOPBP1Q92547 1522 aa13.75□□□□□ -0.21
GTF3A-206ENST00000470606 DNMBPQ6XZF7 1577 aa13.74□□□□□ -0.21
GTF3A-206ENST00000470606 FGD5Q6ZNL6 1462 aa13.73□□□□□ -0.21
GTF3A-206ENST00000470606 EHMT2Q96KQ7 1210 aa13.68□□□□□ -0.22
GTF3A-206ENST00000470606 POLA1P09884 1462 aaPredicted RBP13.68□□□□□ -0.22
GTF3A-206ENST00000470606 RAD54L2Q9Y4B4 1467 aa13.67□□□□□ -0.22
GTF3A-206ENST00000470606 EEA1Q15075 1411 aa13.67□□□□□ -0.22
GTF3A-206ENST00000470606 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
GTF3A-206ENST00000470606 MRC2Q9UBG0 1479 aa13.64□□□□□ -0.23
GTF3A-206ENST00000470606 CUX2O14529 1486 aa13.61□□□□□ -0.23
GTF3A-206ENST00000470606 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
GTF3A-206ENST00000470606 THOC2Q8NI27 1593 aaKnown RBP13.6□□□□□ -0.23
GTF3A-206ENST00000470606 WDR62O43379 1518 aa13.6□□□□□ -0.23
GTF3A-206ENST00000470606 ABCA10Q8WWZ4 1543 aa13.59□□□□□ -0.23
GTF3A-206ENST00000470606 KIF27Q86VH2 1401 aa13.59□□□□□ -0.23
GTF3A-206ENST00000470606 WDR97A6NE52 1622 aa13.58□□□□□ -0.23
GTF3A-206ENST00000470606 TARBP1Q13395 1621 aaKnown RBP13.57□□□□□ -0.24
GTF3A-206ENST00000470606 KIF21BO75037 1637 aa13.55□□□□□ -0.24
GTF3A-206ENST00000470606 IGF1RP08069 1367 aa13.55□□□□□ -0.24
GTF3A-206ENST00000470606 RAPGEF2Q9Y4G8 1499 aa13.55□□□□□ -0.24
GTF3A-206ENST00000470606 PRXQ9BXM0 1461 aa13.54□□□□□ -0.24
GTF3A-206ENST00000470606 TDRD9Q8NDG6 1382 aaKnown RBP13.52□□□□□ -0.24
GTF3A-206ENST00000470606 GOLGA3Q08378 1498 aa13.51□□□□□ -0.25
GTF3A-206ENST00000470606 ABCA5Q8WWZ7 1642 aa13.51□□□□□ -0.25
GTF3A-206ENST00000470606 ZNF608Q9ULD9 1512 aaPredicted RBP13.47□□□□□ -0.25
GTF3A-206ENST00000470606 TNIKQ9UKE5 1360 aa13.47□□□□□ -0.25
GTF3A-206ENST00000470606 ERICH3Q5RHP9 1530 aa13.46□□□□□ -0.25
GTF3A-206ENST00000470606 AQRO60306 1485 aaKnown RBP eCLIP13.46□□□□□ -0.254e-8■■■■□ 22.5
GTF3A-206ENST00000470606 GAPVD1Q14C86 1478 aa13.46□□□□□ -0.25
GTF3A-206ENST00000470606 UBTFP17480 764 aaKnown RBP13.46□□□□□ -0.25
GTF3A-206ENST00000470606 IFT140Q96RY7 1462 aa13.45□□□□□ -0.26
GTF3A-206ENST00000470606 CARMIL1Q5VZK9 1371 aa13.44□□□□□ -0.26
GTF3A-206ENST00000470606 CEP162Q5TB80 1403 aa13.42□□□□□ -0.26
GTF3A-206ENST00000470606 PBRM1Q86U86 1689 aa13.4□□□□□ -0.26
GTF3A-206ENST00000470606 CUL7Q14999 1698 aa13.39□□□□□ -0.27
GTF3A-206ENST00000470606 EIF4G3O43432 1585 aaKnown RBP13.38□□□□□ -0.27
GTF3A-206ENST00000470606 GRIN2BQ13224 1484 aa13.35□□□□□ -0.27
GTF3A-206ENST00000470606 ADAMTS12P58397 1594 aa13.32□□□□□ -0.28
GTF3A-206ENST00000470606 RANGAP1P46060 587 aaPredicted RBP13.32□□□□□ -0.28
GTF3A-206ENST00000470606 CLIP1P30622 1438 aa13.31□□□□□ -0.28
GTF3A-206ENST00000470606 SNAPC4Q5SXM2 1469 aa13.29□□□□□ -0.28
GTF3A-206ENST00000470606 FHAD1B1AJZ9 1412 aa13.29□□□□□ -0.28
GTF3A-206ENST00000470606 CTTNBP2Q8WZ74 1663 aa13.26□□□□□ -0.29
GTF3A-206ENST00000470606 ARHGAP35Q9NRY4 1499 aa13.25□□□□□ -0.29
GTF3A-206ENST00000470606 ARAP1Q96P48 1450 aa13.24□□□□□ -0.29
GTF3A-206ENST00000470606 MAGI1Q96QZ7 1491 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms