RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 NISCHQ9Y2I1 1504 aa23.88■■□□□ 1.41
MSH6-215ENST00000622629 DCAF8L2P0C7V8 631 aa22.5■■□□□ 1.19
MSH6-215ENST00000622629 SUPT5HO00267 1087 aaKnown RBP22.06■■□□□ 1.12
MSH6-215ENST00000622629 SHROOM4Q9ULL8 1493 aa22.05■■□□□ 1.12
MSH6-215ENST00000622629 EHMT2Q96KQ7 1210 aa20.9■□□□□ 0.94
MSH6-215ENST00000622629 PCGF6Q9BYE7 350 aa20.73■□□□□ 0.91
MSH6-215ENST00000622629 ABCC9O60706 1549 aa20.64■□□□□ 0.89
MSH6-215ENST00000622629 FAM9AQ8IZU1 332 aaPredicted RBP20.64■□□□□ 0.89
MSH6-215ENST00000622629 CHIC1Q5VXU3 224 aa20.45■□□□□ 0.86
MSH6-215ENST00000622629 TRIM41Q8WV44 630 aa20.37■□□□□ 0.85
MSH6-215ENST00000622629 LOC105371045A0A1W2PR82 267 aa20.26■□□□□ 0.83
MSH6-215ENST00000622629 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
MSH6-215ENST00000622629 HRCP23327 699 aa20.09■□□□□ 0.81
MSH6-215ENST00000622629 CCDC180Q9P1Z9 1646 aa20.09■□□□□ 0.81
MSH6-215ENST00000622629 PABPN1Q86U42 306 aaKnown RBP eCLIP20.04■□□□□ 0.8
MSH6-215ENST00000622629 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
MSH6-215ENST00000622629 ZCCHC6Q5VYS8 1495 aaKnown RBP19.94■□□□□ 0.78
MSH6-215ENST00000622629 TRIM26Q12899 539 aaPredicted RBP19.93■□□□□ 0.78
MSH6-215ENST00000622629 ZEB1P37275 1124 aaPredicted RBP19.84■□□□□ 0.77
MSH6-215ENST00000622629 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.77
MSH6-215ENST00000622629 APLP2Q06481 763 aa19.83■□□□□ 0.77
MSH6-215ENST00000622629 CCER1Q8TC90 406 aaPredicted RBP19.81■□□□□ 0.76
MSH6-215ENST00000622629 UBTFP17480 764 aaKnown RBP19.78■□□□□ 0.76
MSH6-215ENST00000622629 SCRIBQ14160 1630 aa19.57■□□□□ 0.72
MSH6-215ENST00000622629 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
MSH6-215ENST00000622629 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.4■□□□□ 0.7
MSH6-215ENST00000622629 CENPBP07199 599 aaPredicted RBP19.35■□□□□ 0.69
MSH6-215ENST00000622629 RB1CC1Q8TDY2 1594 aa19.34■□□□□ 0.69
MSH6-215ENST00000622629 ATP1B4Q9UN42 357 aaPredicted RBP19.29■□□□□ 0.68
MSH6-215ENST00000622629 HNRNPUL2Q1KMD3 747 aaKnown RBP19.27■□□□□ 0.68
MSH6-215ENST00000622629 YTHDC1Q96MU7 727 aaKnown RBP19.27■□□□□ 0.67
MSH6-215ENST00000622629 NACADO15069 1562 aa19.26■□□□□ 0.67
MSH6-215ENST00000622629 DCAF1Q9Y4B6 1507 aa19.21■□□□□ 0.67
MSH6-215ENST00000622629 RSF1Q96T23 1441 aaPredicted RBP19.15■□□□□ 0.66
MSH6-215ENST00000622629 ITGAEP38570 1179 aa19.1■□□□□ 0.65
MSH6-215ENST00000622629 PELP1Q8IZL8 1130 aaKnown RBP19.04■□□□□ 0.64
MSH6-215ENST00000622629 DIEXFQ68CQ4 756 aaKnown RBP19.04■□□□□ 0.64
MSH6-215ENST00000622629 CSRNP3Q8WYN3 585 aa19.01■□□□□ 0.63
MSH6-215ENST00000622629 CECR2Q9BXF3 1484 aa18.89■□□□□ 0.61
MSH6-215ENST00000622629 MYT1Q01538 1121 aa18.84■□□□□ 0.61
MSH6-215ENST00000622629 ZNF316A6NFI3 1004 aaPredicted RBP18.7■□□□□ 0.58
MSH6-215ENST00000622629 GTF3C3Q9Y5Q9 886 aa18.69■□□□□ 0.58
MSH6-215ENST00000622629 FAM50AQ14320 339 aaKnown RBP18.65■□□□□ 0.58
MSH6-215ENST00000622629 MROH2BQ7Z745 1585 aa18.62■□□□□ 0.57
MSH6-215ENST00000622629 ACIN1Q9UKV3 1341 aaKnown RBP18.6■□□□□ 0.57
MSH6-215ENST00000622629 NEFLP07196 543 aa18.56■□□□□ 0.56
MSH6-215ENST00000622629 P3H3Q8IVL6 736 aa18.56■□□□□ 0.56
MSH6-215ENST00000622629 CEP162Q5TB80 1403 aa18.56■□□□□ 0.56
MSH6-215ENST00000622629 NEUROD1Q13562 356 aa18.55■□□□□ 0.56
MSH6-215ENST00000622629 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
MSH6-215ENST00000622629 BAZ1BQ9UIG0 1483 aaKnown RBP18.52■□□□□ 0.55
MSH6-215ENST00000622629 SCAF1Q9H7N4 1312 aaKnown RBP18.46■□□□□ 0.55
MSH6-215ENST00000622629 CLIP1P30622 1438 aa18.45■□□□□ 0.54
MSH6-215ENST00000622629 SOGA1O94964 1423 aa18.45■□□□□ 0.54
MSH6-215ENST00000622629 WRNQ14191 1432 aaPredicted RBP eCLIP18.45■□□□□ 0.54
MSH6-215ENST00000622629 TNIKQ9UKE5 1360 aa18.42■□□□□ 0.54
MSH6-215ENST00000622629 EEA1Q15075 1411 aa18.4■□□□□ 0.54
MSH6-215ENST00000622629 CNGB1Q14028 1251 aaPredicted RBP18.4■□□□□ 0.54
MSH6-215ENST00000622629 WIZO95785 1651 aa18.39■□□□□ 0.53
MSH6-215ENST00000622629 GOLGA3Q08378 1498 aa18.39■□□□□ 0.53
MSH6-215ENST00000622629 ABCC8Q09428 1581 aa18.38■□□□□ 0.53
MSH6-215ENST00000622629 POLR3GLQ9BT43 218 aa18.37■□□□□ 0.53
MSH6-215ENST00000622629 FBLN2P98095 1184 aa18.37■□□□□ 0.53
MSH6-215ENST00000622629 CCDC88BA6NC98 1476 aa18.36■□□□□ 0.53
MSH6-215ENST00000622629 TRIM52Q96A61 297 aa18.31■□□□□ 0.52
MSH6-215ENST00000622629 MIER1Q8N108 512 aa18.31■□□□□ 0.52
MSH6-215ENST00000622629 ERICH6Q7L0X2 663 aa18.29■□□□□ 0.52
MSH6-215ENST00000622629 ARID3CA6NKF2 412 aa18.28■□□□□ 0.52
MSH6-215ENST00000622629 BCANQ96GW7 911 aa18.26■□□□□ 0.51
MSH6-215ENST00000622629 ATAD2BQ9ULI0 1458 aa18.24■□□□□ 0.51
MSH6-215ENST00000622629 CEP164Q9UPV0 1460 aa18.24■□□□□ 0.51
MSH6-215ENST00000622629 SMARCA4P51532 1647 aa18.21■□□□□ 0.51
MSH6-215ENST00000622629 SMARCA2P51531 1590 aa18.18■□□□□ 0.5
MSH6-215ENST00000622629 ANP32CO43423 234 aa18.17■□□□□ 0.5
MSH6-215ENST00000622629 DDX10Q13206 875 aaKnown RBP18.14■□□□□ 0.49
MSH6-215ENST00000622629 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
MSH6-215ENST00000622629 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
MSH6-215ENST00000622629 RUSC2Q8N2Y8 1516 aa18.11■□□□□ 0.49
MSH6-215ENST00000622629 EIF4G1Q04637 1599 aaKnown RBP18.09■□□□□ 0.49
MSH6-215ENST00000622629 HIRIP3Q9BW71 556 aaPredicted RBP18.08■□□□□ 0.48
MSH6-215ENST00000622629 KIF27Q86VH2 1401 aa18.07■□□□□ 0.48
MSH6-215ENST00000622629 ZNF326Q5BKZ1 582 aaKnown RBP18.07■□□□□ 0.48
MSH6-215ENST00000622629 DNAJC5BQ9UF47 199 aa18.05■□□□□ 0.48
MSH6-215ENST00000622629 ERCC6Q03468 1493 aa18.03■□□□□ 0.48
MSH6-215ENST00000622629 CHIC2Q9UKJ5 165 aa18.02■□□□□ 0.47
MSH6-215ENST00000622629 VPS8Q8N3P4 1428 aa18.02■□□□□ 0.47
MSH6-215ENST00000622629 KANK4Q5T7N3 995 aaPredicted RBP18.01■□□□□ 0.47
MSH6-215ENST00000622629 TONSLQ96HA7 1378 aa18.01■□□□□ 0.47
MSH6-215ENST00000622629 MYT1LQ9UL68 1186 aa17.99■□□□□ 0.47
MSH6-215ENST00000622629 CADPSQ9ULU8 1353 aa17.95■□□□□ 0.46
MSH6-215ENST00000622629 MTUS2Q5JR59 1369 aa17.95■□□□□ 0.46
MSH6-215ENST00000622629 ZNF777Q9ULD5 760 aaPredicted RBP17.94■□□□□ 0.46
MSH6-215ENST00000622629 FKBP8Q14318 412 aa17.93■□□□□ 0.46
MSH6-215ENST00000622629 UNC13AQ9UPW8 1703 aa17.93■□□□□ 0.46
MSH6-215ENST00000622629 SIN3AQ96ST3 1273 aa17.91■□□□□ 0.46
MSH6-215ENST00000622629 NCAPD3P42695 1498 aa17.91■□□□□ 0.46
MSH6-215ENST00000622629 RAPGEF2Q9Y4G8 1499 aa17.91■□□□□ 0.46
MSH6-215ENST00000622629 CCNB3Q8WWL7 1395 aa17.89■□□□□ 0.45
MSH6-215ENST00000622629 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
MSH6-215ENST00000622629 CUX2O14529 1486 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms