RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 NISCHQ9Y2I1 1504 aa25.02■■□□□ 1.6
MSH6-214ENST00000616033 SHROOM4Q9ULL8 1493 aa22.59■■□□□ 1.21
MSH6-214ENST00000616033 SUPT5HO00267 1087 aaKnown RBP22.5■■□□□ 1.19
MSH6-214ENST00000616033 PCGF6Q9BYE7 350 aa22.08■■□□□ 1.12
MSH6-214ENST00000616033 PPARGC1BQ86YN6 1023 aaKnown RBP22.04■■□□□ 1.12
MSH6-214ENST00000616033 HRCP23327 699 aa22.02■■□□□ 1.11
MSH6-214ENST00000616033 DCAF8L2P0C7V8 631 aa21.97■■□□□ 1.11
MSH6-214ENST00000616033 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
MSH6-214ENST00000616033 MYO15BQ96JP2 1530 aa21.59■■□□□ 1.05
MSH6-214ENST00000616033 LOC105371045A0A1W2PR82 267 aa21.46■■□□□ 1.03
MSH6-214ENST00000616033 PELP1Q8IZL8 1130 aaKnown RBP21.28■■□□□ 1
MSH6-214ENST00000616033 EHMT2Q96KQ7 1210 aa21.25■□□□□ 0.99
MSH6-214ENST00000616033 CCDC180Q9P1Z9 1646 aa21.03■□□□□ 0.96
MSH6-214ENST00000616033 TRIM26Q12899 539 aaPredicted RBP21■□□□□ 0.95
MSH6-214ENST00000616033 ZCCHC6Q5VYS8 1495 aaKnown RBP20.99■□□□□ 0.95
MSH6-214ENST00000616033 FAM9AQ8IZU1 332 aaPredicted RBP20.98■□□□□ 0.95
MSH6-214ENST00000616033 SCAF1Q9H7N4 1312 aaKnown RBP20.9■□□□□ 0.94
MSH6-214ENST00000616033 DCAF1Q9Y4B6 1507 aa20.74■□□□□ 0.91
MSH6-214ENST00000616033 ABCC9O60706 1549 aa20.66■□□□□ 0.9
MSH6-214ENST00000616033 ZEB1P37275 1124 aaPredicted RBP20.63■□□□□ 0.89
MSH6-214ENST00000616033 TTBK1Q5TCY1 1321 aaPredicted RBP20.62■□□□□ 0.89
MSH6-214ENST00000616033 TRIM41Q8WV44 630 aa20.57■□□□□ 0.88
MSH6-214ENST00000616033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.52■□□□□ 0.88
MSH6-214ENST00000616033 NEUROD1Q13562 356 aa20.46■□□□□ 0.87
MSH6-214ENST00000616033 MYT1Q01538 1121 aa20.44■□□□□ 0.86
MSH6-214ENST00000616033 CCER1Q8TC90 406 aaPredicted RBP20.43■□□□□ 0.86
MSH6-214ENST00000616033 GTF3C3Q9Y5Q9 886 aa20.41■□□□□ 0.86
MSH6-214ENST00000616033 ACIN1Q9UKV3 1341 aaKnown RBP20.35■□□□□ 0.85
MSH6-214ENST00000616033 YTHDC1Q96MU7 727 aaKnown RBP20.34■□□□□ 0.85
MSH6-214ENST00000616033 SCRIBQ14160 1630 aa20.26■□□□□ 0.83
MSH6-214ENST00000616033 DIEXFQ68CQ4 756 aaKnown RBP20.23■□□□□ 0.83
MSH6-214ENST00000616033 CENPBP07199 599 aaPredicted RBP20.2■□□□□ 0.82
MSH6-214ENST00000616033 PABPN1Q86U42 306 aaKnown RBP eCLIP19.97■□□□□ 0.79
MSH6-214ENST00000616033 RSF1Q96T23 1441 aaPredicted RBP19.85■□□□□ 0.77
MSH6-214ENST00000616033 CECR2Q9BXF3 1484 aa19.82■□□□□ 0.76
MSH6-214ENST00000616033 BCL11AQ9H165 835 aa19.79■□□□□ 0.76
MSH6-214ENST00000616033 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
MSH6-214ENST00000616033 HNRNPUL2Q1KMD3 747 aaKnown RBP19.77■□□□□ 0.76
MSH6-214ENST00000616033 NACADO15069 1562 aa19.76■□□□□ 0.75
MSH6-214ENST00000616033 MIER1Q8N108 512 aa19.76■□□□□ 0.75
MSH6-214ENST00000616033 ZNF316A6NFI3 1004 aaPredicted RBP19.74■□□□□ 0.75
MSH6-214ENST00000616033 RANGAP1P46060 587 aaPredicted RBP19.73■□□□□ 0.75
MSH6-214ENST00000616033 UBTFP17480 764 aaKnown RBP19.7■□□□□ 0.74
MSH6-214ENST00000616033 MROH2BQ7Z745 1585 aa19.59■□□□□ 0.73
MSH6-214ENST00000616033 WIZO95785 1651 aa19.42■□□□□ 0.7
MSH6-214ENST00000616033 BCANQ96GW7 911 aa19.41■□□□□ 0.7
MSH6-214ENST00000616033 PRKCSHP14314 528 aaPredicted RBP19.38■□□□□ 0.69
MSH6-214ENST00000616033 CEP162Q5TB80 1403 aa19.37■□□□□ 0.69
MSH6-214ENST00000616033 APLP2Q06481 763 aa19.33■□□□□ 0.68
MSH6-214ENST00000616033 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
MSH6-214ENST00000616033 ABCC8Q09428 1581 aa19.29■□□□□ 0.68
MSH6-214ENST00000616033 SOGA1O94964 1423 aa19.29■□□□□ 0.68
MSH6-214ENST00000616033 SUPT16HQ9Y5B9 1047 aaKnown RBP19.28■□□□□ 0.68
MSH6-214ENST00000616033 CCDC88BA6NC98 1476 aa19.26■□□□□ 0.67
MSH6-214ENST00000616033 ITGAEP38570 1179 aa19.21■□□□□ 0.67
MSH6-214ENST00000616033 BAZ1AQ9NRL2 1556 aaPredicted RBP19.2■□□□□ 0.66
MSH6-214ENST00000616033 ANP32EQ9BTT0 268 aa19.2■□□□□ 0.66
MSH6-214ENST00000616033 RUSC2Q8N2Y8 1516 aa19.18■□□□□ 0.66
MSH6-214ENST00000616033 KCNH8Q96L42 1107 aa19.14■□□□□ 0.65
MSH6-214ENST00000616033 TSHZ2Q9NRE2 1034 aa19.14■□□□□ 0.65
MSH6-214ENST00000616033 UNC13AQ9UPW8 1703 aa19.13■□□□□ 0.65
MSH6-214ENST00000616033 TNIKQ9UKE5 1360 aa19.09■□□□□ 0.65
MSH6-214ENST00000616033 WRNQ14191 1432 aaPredicted RBP eCLIP19.07■□□□□ 0.64
MSH6-214ENST00000616033 SMARCA4P51532 1647 aa19.07■□□□□ 0.64
MSH6-214ENST00000616033 BICRAQ9NZM4 1560 aa19.06■□□□□ 0.64
MSH6-214ENST00000616033 FKBP8Q14318 412 aa19.03■□□□□ 0.64
MSH6-214ENST00000616033 HIRIP3Q9BW71 556 aaPredicted RBP18.97■□□□□ 0.63
MSH6-214ENST00000616033 TOP2AP11388 1531 aaKnown RBP18.93■□□□□ 0.62
MSH6-214ENST00000616033 CLIP1P30622 1438 aa18.92■□□□□ 0.62
MSH6-214ENST00000616033 DDX10Q13206 875 aaKnown RBP18.91■□□□□ 0.62
MSH6-214ENST00000616033 TRIM52Q96A61 297 aa18.91■□□□□ 0.62
MSH6-214ENST00000616033 GOLGA3Q08378 1498 aa18.89■□□□□ 0.61
MSH6-214ENST00000616033 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
MSH6-214ENST00000616033 NEFLP07196 543 aa18.86■□□□□ 0.61
MSH6-214ENST00000616033 BAZ1BQ9UIG0 1483 aaKnown RBP18.83■□□□□ 0.61
MSH6-214ENST00000616033 ATAD2BQ9ULI0 1458 aa18.83■□□□□ 0.6
MSH6-214ENST00000616033 KANK4Q5T7N3 995 aaPredicted RBP18.82■□□□□ 0.6
MSH6-214ENST00000616033 IRX6P78412 446 aaPredicted RBP18.8■□□□□ 0.6
MSH6-214ENST00000616033 DHX57Q6P158 1386 aaKnown RBP18.78■□□□□ 0.6
MSH6-214ENST00000616033 RBM19Q9Y4C8 960 aaKnown RBP18.77■□□□□ 0.6
MSH6-214ENST00000616033 ATP1B4Q9UN42 357 aaPredicted RBP18.75■□□□□ 0.59
MSH6-214ENST00000616033 CLSPNQ9HAW4 1339 aa18.75■□□□□ 0.59
MSH6-214ENST00000616033 ANO8Q9HCE9 1232 aaPredicted RBP18.74■□□□□ 0.59
MSH6-214ENST00000616033 ERICH6Q7L0X2 663 aa18.72■□□□□ 0.59
MSH6-214ENST00000616033 VPS8Q8N3P4 1428 aa18.72■□□□□ 0.59
MSH6-214ENST00000616033 SIN3AQ96ST3 1273 aa18.71■□□□□ 0.59
MSH6-214ENST00000616033 CCDC136Q96JN2 1154 aa18.7■□□□□ 0.58
MSH6-214ENST00000616033 EIF4G1Q04637 1599 aaKnown RBP18.7■□□□□ 0.58
MSH6-214ENST00000616033 EEA1Q15075 1411 aa18.69■□□□□ 0.58
MSH6-214ENST00000616033 RAPGEF2Q9Y4G8 1499 aa18.67■□□□□ 0.58
MSH6-214ENST00000616033 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
MSH6-214ENST00000616033 FAM50AQ14320 339 aaKnown RBP18.64■□□□□ 0.57
MSH6-214ENST00000616033 CNGB1Q14028 1251 aaPredicted RBP18.58■□□□□ 0.56
MSH6-214ENST00000616033 ANP32CO43423 234 aa18.56■□□□□ 0.56
MSH6-214ENST00000616033 MSH5O43196 834 aa18.54■□□□□ 0.56
MSH6-214ENST00000616033 RTN4Q9NQC3 1192 aaKnown RBP18.54■□□□□ 0.56
MSH6-214ENST00000616033 P3H3Q8IVL6 736 aa18.52■□□□□ 0.56
MSH6-214ENST00000616033 HNRNPUQ00839 825 aaKnown RBP eCLIP18.51■□□□□ 0.551e-6■□□□□ 11
MSH6-214ENST00000616033 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
MSH6-214ENST00000616033 KIF21BO75037 1637 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms