RNA–Protein interactions for RNA: ENST00000493903.1

GTF3A-208, Transcript of general transcription factor IIIA, humanhuman

TSL 3

Gene GTF3A, Length 748 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-208ENST00000493903 AEBP2Q6ZN18 517 aaPredicted RBP18.32■□□□□ 0.52
GTF3A-208ENST00000493903 CHIC1Q5VXU3 224 aa17.8■□□□□ 0.44
GTF3A-208ENST00000493903 PHF23Q9BUL5 403 aaPredicted RBP15.68■□□□□ 0.1
GTF3A-208ENST00000493903 SENP3Q9H4L4 574 aaPredicted RBP15.52■□□□□ 0.08
GTF3A-208ENST00000493903 FOXD1Q16676 465 aa14.43□□□□□ -0.1
GTF3A-208ENST00000493903 PLPPR3Q6T4P5 718 aa14.43□□□□□ -0.1
GTF3A-208ENST00000493903 PPP6R1Q9UPN7 881 aa13.86□□□□□ -0.19
GTF3A-208ENST00000493903 ADRA2BP18089 450 aa13.85□□□□□ -0.19
GTF3A-208ENST00000493903 PIAS4Q8N2W9 510 aaPredicted RBP13.6□□□□□ -0.23
GTF3A-208ENST00000493903 MSH5O43196 834 aa13.29□□□□□ -0.28
GTF3A-208ENST00000493903 PPP4R3CPQ6ZMV5 832 aa12.72□□□□□ -0.37
GTF3A-208ENST00000493903 SCAF1Q9H7N4 1312 aaKnown RBP12.61□□□□□ -0.39
GTF3A-208ENST00000493903 MAPK8IP2Q13387 824 aaPredicted RBP12.58□□□□□ -0.4
GTF3A-208ENST00000493903 KCNA4P22459 653 aa12.39□□□□□ -0.43
GTF3A-208ENST00000493903 DMRT2Q9Y5R5 561 aa12.38□□□□□ -0.43
GTF3A-208ENST00000493903 CNKSR2Q8WXI2 1034 aa12.36□□□□□ -0.43
GTF3A-208ENST00000493903 NCBP3Q53F19 620 aaKnown RBP12.34□□□□□ -0.43
GTF3A-208ENST00000493903 POTEDQ86YR6 584 aa12.23□□□□□ -0.45
GTF3A-208ENST00000493903 NPM3O75607 178 aaKnown RBP12.2□□□□□ -0.46
GTF3A-208ENST00000493903 RNF216Q9NWF9 866 aaPredicted RBP12.12□□□□□ -0.47
GTF3A-208ENST00000493903 HOXD11P31277 338 aaPredicted RBP12.1□□□□□ -0.47
GTF3A-208ENST00000493903 EHMT2Q96KQ7 1210 aa11.93□□□□□ -0.5
GTF3A-208ENST00000493903 DCAF8L1A6NGE4 600 aa11.88□□□□□ -0.51
GTF3A-208ENST00000493903 DNAJC5BQ9UF47 199 aa11.79□□□□□ -0.52
GTF3A-208ENST00000493903 SLC4A1APQ9BWU0 796 aaKnown RBP11.77□□□□□ -0.53
GTF3A-208ENST00000493903 SLC4A2P04920 1241 aa11.54□□□□□ -0.56
GTF3A-208ENST00000493903 CSRNP3Q8WYN3 585 aa11.54□□□□□ -0.56
GTF3A-208ENST00000493903 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.54□□□□□ -0.569e-11■■■□□ 18.6
GTF3A-208ENST00000493903 ZBTB22O15209 634 aa11.41□□□□□ -0.58
GTF3A-208ENST00000493903 RNF39Q9H2S5 420 aa11.41□□□□□ -0.58
GTF3A-208ENST00000493903 FOXD4L1Q9NU39 408 aa11.39□□□□□ -0.59
GTF3A-208ENST00000493903 U3KPZ7 1027 aaPredicted RBP11.36□□□□□ -0.59
GTF3A-208ENST00000493903 MYCNP04198 464 aaPredicted RBP11.25□□□□□ -0.61
GTF3A-208ENST00000493903 C1QBPQ07021 282 aaKnown RBP11.24□□□□□ -0.61
GTF3A-208ENST00000493903 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.15□□□□□ -0.62
GTF3A-208ENST00000493903 CACNB1Q02641 598 aaPredicted RBP11.15□□□□□ -0.62
GTF3A-208ENST00000493903 HNRNPUL2Q1KMD3 747 aaKnown RBP11.15□□□□□ -0.62
GTF3A-208ENST00000493903 SAMD1Q6SPF0 538 aaPredicted RBP11.12□□□□□ -0.63
GTF3A-208ENST00000493903 SPINK5Q9NQ38 1064 aaPredicted RBP11.08□□□□□ -0.64
GTF3A-208ENST00000493903 APLP2Q06481 763 aa11.03□□□□□ -0.64
GTF3A-208ENST00000493903 CAPN15O75808 1086 aa11.02□□□□□ -0.65
GTF3A-208ENST00000493903 ATF5Q9Y2D1 282 aaPredicted RBP11□□□□□ -0.65
GTF3A-208ENST00000493903 ATXN8OSP0DMR3 200 aa10.97□□□□□ -0.65
GTF3A-208ENST00000493903 TRHP20396 242 aaPredicted RBP10.95□□□□□ -0.66
GTF3A-208ENST00000493903 ZNF219Q9P2Y4 722 aaPredicted RBP10.92□□□□□ -0.66
GTF3A-208ENST00000493903 DSG3P32926 999 aa10.84□□□□□ -0.67
GTF3A-208ENST00000493903 ABCB7O75027 752 aa10.83□□□□□ -0.68
GTF3A-208ENST00000493903 SLC24A1O60721 1099 aa10.78□□□□□ -0.68
GTF3A-208ENST00000493903 POLA2Q14181 598 aa10.77□□□□□ -0.69
GTF3A-208ENST00000493903 AMER1Q5JTC6 1135 aaPredicted RBP10.73□□□□□ -0.69
GTF3A-208ENST00000493903 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.7
GTF3A-208ENST00000493903 ZBTB12Q9Y330 459 aaPredicted RBP10.54□□□□□ -0.72
GTF3A-208ENST00000493903 MKRN4PQ13434 485 aaPredicted RBP10.51□□□□□ -0.73
GTF3A-208ENST00000493903 FBLN2P98095 1184 aa10.49□□□□□ -0.73
GTF3A-208ENST00000493903 OSCARQ8IYS5 282 aa10.42□□□□□ -0.74
GTF3A-208ENST00000493903 FKBP8Q14318 412 aa10.38□□□□□ -0.75
GTF3A-208ENST00000493903 RBM42Q9BTD8 480 aaKnown RBP10.3□□□□□ -0.76
GTF3A-208ENST00000493903 SPDYE2BA6NHP3 402 aa10.26□□□□□ -0.77
GTF3A-208ENST00000493903 SPDYE6P0CI01 402 aa10.26□□□□□ -0.77
GTF3A-208ENST00000493903 SPDYE2Q495Y8 402 aa10.26□□□□□ -0.77
GTF3A-208ENST00000493903 SPDYE4A6NLX3 237 aa10.23□□□□□ -0.77
GTF3A-208ENST00000493903 ZNF692Q9BU19 519 aaPredicted RBP10.23□□□□□ -0.77
GTF3A-208ENST00000493903 SSUH2Q9Y2M2 353 aa10.19□□□□□ -0.78
GTF3A-208ENST00000493903 AKT1S1Q96B36 256 aa10.17□□□□□ -0.78
GTF3A-208ENST00000493903 PABPN1Q86U42 306 aaKnown RBP eCLIP10.11□□□□□ -0.79
GTF3A-208ENST00000493903 REM2Q8IYK8 340 aaPredicted RBP10.09□□□□□ -0.79
GTF3A-208ENST00000493903 PROM2Q8N271 834 aa10.04□□□□□ -0.8
GTF3A-208ENST00000493903 PITPNM1O00562 1244 aa9.99□□□□□ -0.81
GTF3A-208ENST00000493903 SPDYE1Q8NFV5 336 aaPredicted RBP9.98□□□□□ -0.81
GTF3A-208ENST00000493903 CLEC11AQ9Y240 323 aa9.97□□□□□ -0.81
GTF3A-208ENST00000493903 CHRDL2Q6WN34 429 aa9.92□□□□□ -0.82
GTF3A-208ENST00000493903 FBXO3Q9UK99 471 aa9.91□□□□□ -0.82
GTF3A-208ENST00000493903 STAG3Q9UJ98 1225 aa9.88□□□□□ -0.83
GTF3A-208ENST00000493903 PRR29P0C7W0 189 aa9.85□□□□□ -0.83
GTF3A-208ENST00000493903 PLCB2Q00722 1185 aa9.84□□□□□ -0.83
GTF3A-208ENST00000493903 FXR2P51116 673 aaKnown RBP eCLIP9.79□□□□□ -0.84
GTF3A-208ENST00000493903 PIP4P2Q8N4L2 257 aa9.79□□□□□ -0.84
GTF3A-208ENST00000493903 PRKAR2AP13861 404 aaKnown RBP9.74□□□□□ -0.85
GTF3A-208ENST00000493903 CHADLQ6NUI6 762 aa9.74□□□□□ -0.85
GTF3A-208ENST00000493903 CREBZFQ9NS37 354 aa9.72□□□□□ -0.85
GTF3A-208ENST00000493903 VASPP50552 380 aaPredicted RBP9.71□□□□□ -0.86
GTF3A-208ENST00000493903 MIER1Q8N108 512 aa9.71□□□□□ -0.86
GTF3A-208ENST00000493903 PLCD3Q8N3E9 789 aa9.69□□□□□ -0.86
GTF3A-208ENST00000493903 HAP1P54257 671 aaPredicted RBP9.67□□□□□ -0.86
GTF3A-208ENST00000493903 POTEHQ6S545 545 aa9.67□□□□□ -0.86
GTF3A-208ENST00000493903 BCANQ96GW7 911 aa9.66□□□□□ -0.86
GTF3A-208ENST00000493903 PLEKHG5O94827 1062 aa9.63□□□□□ -0.87
GTF3A-208ENST00000493903 MNX1P50219 401 aaPredicted RBP9.62□□□□□ -0.87
GTF3A-208ENST00000493903 VSIG10Q8N0Z9 540 aa9.62□□□□□ -0.87
GTF3A-208ENST00000493903 FARP1Q9Y4F1 1045 aaPredicted RBP9.62□□□□□ -0.87
GTF3A-208ENST00000493903 IFNLR1Q8IU57 520 aaPredicted RBP9.6□□□□□ -0.87
GTF3A-208ENST00000493903 DCAF8L2P0C7V8 631 aa9.58□□□□□ -0.88
GTF3A-208ENST00000493903 PKD2Q13563 968 aa9.55□□□□□ -0.88
GTF3A-208ENST00000493903 KLHL34Q8N239 644 aa9.55□□□□□ -0.88
GTF3A-208ENST00000493903 ZBTB47Q9UFB7 747 aaPredicted RBP9.55□□□□□ -0.88
GTF3A-208ENST00000493903 NPM1P06748 294 aaKnown RBP eCLIP9.53□□□□□ -0.88
GTF3A-208ENST00000493903 TAOK2Q9UL54 1235 aa9.51□□□□□ -0.89
GTF3A-208ENST00000493903 HAX1O00165 279 aa9.49□□□□□ -0.89
GTF3A-208ENST00000493903 NUBP1P53384 320 aa9.47□□□□□ -0.89
GTF3A-208ENST00000493903 BBXQ8WY36 941 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms