RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 NISCHQ9Y2I1 1504 aa24.5■■□□□ 1.51
YBX3-211ENST00000541351 ABCC9O60706 1549 aa23.13■■□□□ 1.29
YBX3-211ENST00000541351 CCDC180Q9P1Z9 1646 aa22.39■■□□□ 1.18
YBX3-211ENST00000541351 DNAJC5BQ9UF47 199 aa22.32■■□□□ 1.16
YBX3-211ENST00000541351 RB1CC1Q8TDY2 1594 aa21.76■■□□□ 1.07
YBX3-211ENST00000541351 NACADO15069 1562 aa21.41■■□□□ 1.02
YBX3-211ENST00000541351 PABPN1Q86U42 306 aaKnown RBP eCLIP21.38■■□□□ 1.015e-7■□□□□ 10.2
YBX3-211ENST00000541351 DNAJC5Q9H3Z4 198 aa21.31■■□□□ 1
YBX3-211ENST00000541351 DCAF8L2P0C7V8 631 aa21.11■□□□□ 0.97
YBX3-211ENST00000541351 UNC13AQ9UPW8 1703 aa21.03■□□□□ 0.96
YBX3-211ENST00000541351 CECR2Q9BXF3 1484 aa20.99■□□□□ 0.95
YBX3-211ENST00000541351 BICRAQ9NZM4 1560 aa20.97■□□□□ 0.95
YBX3-211ENST00000541351 SHROOM4Q9ULL8 1493 aa20.89■□□□□ 0.94
YBX3-211ENST00000541351 MYO15BQ96JP2 1530 aa20.88■□□□□ 0.93
YBX3-211ENST00000541351 CC2D2AQ9P2K1 1620 aa20.85■□□□□ 0.93
YBX3-211ENST00000541351 EIF4G1Q04637 1599 aaKnown RBP20.63■□□□□ 0.89
YBX3-211ENST00000541351 CUX2O14529 1486 aa20.42■□□□□ 0.86
YBX3-211ENST00000541351 SCRIBQ14160 1630 aa20.27■□□□□ 0.83
YBX3-211ENST00000541351 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.83
YBX3-211ENST00000541351 ERCC6Q03468 1493 aa20.17■□□□□ 0.82
YBX3-211ENST00000541351 ZCCHC6Q5VYS8 1495 aaKnown RBP20.12■□□□□ 0.81
YBX3-211ENST00000541351 TRIM41Q8WV44 630 aa20.01■□□□□ 0.79
YBX3-211ENST00000541351 NCAPD3P42695 1498 aa19.75■□□□□ 0.75
YBX3-211ENST00000541351 THOC2Q8NI27 1593 aaKnown RBP19.57■□□□□ 0.72
YBX3-211ENST00000541351 NESP48681 1621 aa19.56■□□□□ 0.72
YBX3-211ENST00000541351 HMGXB3Q12766 1538 aa19.54■□□□□ 0.72
YBX3-211ENST00000541351 ATAD2BQ9ULI0 1458 aa19.53■□□□□ 0.72
YBX3-211ENST00000541351 SMARCA2P51531 1590 aa19.52■□□□□ 0.71
YBX3-211ENST00000541351 LAMC3Q9Y6N6 1575 aa19.46■□□□□ 0.71
YBX3-211ENST00000541351 PDS5BQ9NTI5 1447 aa19.45■□□□□ 0.7
YBX3-211ENST00000541351 OSCARQ8IYS5 282 aa19.37■□□□□ 0.69
YBX3-211ENST00000541351 BAZ1BQ9UIG0 1483 aaKnown RBP19.35■□□□□ 0.69
YBX3-211ENST00000541351 BAZ1AQ9NRL2 1556 aaPredicted RBP19.29■□□□□ 0.68
YBX3-211ENST00000541351 KIF21AQ7Z4S6 1674 aa19.29■□□□□ 0.68
YBX3-211ENST00000541351 SMARCA4P51532 1647 aa19.27■□□□□ 0.68
YBX3-211ENST00000541351 MRC2Q9UBG0 1479 aa19.25■□□□□ 0.67
YBX3-211ENST00000541351 AEBP2Q6ZN18 517 aaPredicted RBP19.19■□□□□ 0.66
YBX3-211ENST00000541351 WDR62O43379 1518 aa19.19■□□□□ 0.66
YBX3-211ENST00000541351 CADPSQ9ULU8 1353 aa19.13■□□□□ 0.65
YBX3-211ENST00000541351 PEG3Q9GZU2 1588 aa19.13■□□□□ 0.65
YBX3-211ENST00000541351 RIMBP3CA6NJZ7 1639 aa19.04■□□□□ 0.64
YBX3-211ENST00000541351 RIMBP3BA6NNM3 1639 aa19.04■□□□□ 0.64
YBX3-211ENST00000541351 RIMBP3Q9UFD9 1639 aa19.04■□□□□ 0.64
YBX3-211ENST00000541351 TRHP20396 242 aaPredicted RBP19.03■□□□□ 0.64
YBX3-211ENST00000541351 CEP164Q9UPV0 1460 aa19.03■□□□□ 0.64
YBX3-211ENST00000541351 ARHGEF11O15085 1522 aa18.95■□□□□ 0.62
YBX3-211ENST00000541351 CYB5RLQ6IPT4 315 aa18.9■□□□□ 0.62
YBX3-211ENST00000541351 FANCD2Q9BXW9 1451 aa18.88■□□□□ 0.61
YBX3-211ENST00000541351 MROH2BQ7Z745 1585 aa18.79■□□□□ 0.6
YBX3-211ENST00000541351 CFTRP13569 1480 aa18.71■□□□□ 0.59
YBX3-211ENST00000541351 URB2Q14146 1524 aaKnown RBP18.69■□□□□ 0.58
YBX3-211ENST00000541351 IFT140Q96RY7 1462 aa18.68■□□□□ 0.58
YBX3-211ENST00000541351 RSF1Q96T23 1441 aaPredicted RBP18.66■□□□□ 0.58
YBX3-211ENST00000541351 ARAP1Q96P48 1450 aa18.66■□□□□ 0.58
YBX3-211ENST00000541351 ZNF608Q9ULD9 1512 aaPredicted RBP18.59■□□□□ 0.57
YBX3-211ENST00000541351 FBLN2P98095 1184 aa18.51■□□□□ 0.55
YBX3-211ENST00000541351 WIZO95785 1651 aa18.5■□□□□ 0.55
YBX3-211ENST00000541351 EIF4G3O43432 1585 aaKnown RBP18.48■□□□□ 0.55
YBX3-211ENST00000541351 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
YBX3-211ENST00000541351 CHD1O14646 1710 aa18.46■□□□□ 0.55
YBX3-211ENST00000541351 TOPBP1Q92547 1522 aa18.39■□□□□ 0.54
YBX3-211ENST00000541351 PRDM2Q13029 1718 aa18.39■□□□□ 0.53
YBX3-211ENST00000541351 AQRO60306 1485 aaKnown RBP eCLIP18.35■□□□□ 0.535e-7■■■■■ 28.1
YBX3-211ENST00000541351 TOP2AP11388 1531 aaKnown RBP18.32■□□□□ 0.52
YBX3-211ENST00000541351 ILDR1Q86SU0 546 aaPredicted RBP18.31■□□□□ 0.52
YBX3-211ENST00000541351 SYNJ1O43426 1573 aa18.3■□□□□ 0.52
YBX3-211ENST00000541351 DNMBPQ6XZF7 1577 aa18.29■□□□□ 0.52
YBX3-211ENST00000541351 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
YBX3-211ENST00000541351 CLASP1Q7Z460 1538 aa18.27■□□□□ 0.51
YBX3-211ENST00000541351 TARBP1Q13395 1621 aaKnown RBP18.24■□□□□ 0.51
YBX3-211ENST00000541351 GAPVD1Q14C86 1478 aa18.21■□□□□ 0.51
YBX3-211ENST00000541351 WDR97A6NE52 1622 aa18.18■□□□□ 0.5
YBX3-211ENST00000541351 MAGI1Q96QZ7 1491 aaPredicted RBP18.18■□□□□ 0.5
YBX3-211ENST00000541351 SNAPC4Q5SXM2 1469 aa18.17■□□□□ 0.5
YBX3-211ENST00000541351 POLA1P09884 1462 aaPredicted RBP18.15■□□□□ 0.5
YBX3-211ENST00000541351 TDRD9Q8NDG6 1382 aaKnown RBP18.13■□□□□ 0.49
YBX3-211ENST00000541351 SOGA1O94964 1423 aa18.11■□□□□ 0.49
YBX3-211ENST00000541351 SYNJ2O15056 1496 aa18.11■□□□□ 0.49
YBX3-211ENST00000541351 CCDC88BA6NC98 1476 aa18.07■□□□□ 0.48
YBX3-211ENST00000541351 GRIN2BQ13224 1484 aa18.07■□□□□ 0.48
YBX3-211ENST00000541351 RAD54L2Q9Y4B4 1467 aa18.05■□□□□ 0.48
YBX3-211ENST00000541351 KDM4FA0A1W2PPD8 638 aa17.95■□□□□ 0.46
YBX3-211ENST00000541351 FGD5Q6ZNL6 1462 aa17.92■□□□□ 0.46
YBX3-211ENST00000541351 KIF13AQ9H1H9 1805 aa17.91■□□□□ 0.46
YBX3-211ENST00000541351 FAM69CQ0P6D2 419 aa17.89■□□□□ 0.45
YBX3-211ENST00000541351 NPM1P06748 294 aaKnown RBP eCLIP17.88■□□□□ 0.45
YBX3-211ENST00000541351 ABCC10Q5T3U5 1492 aa17.84■□□□□ 0.45
YBX3-211ENST00000541351 KDM6BO15054 1643 aa17.83■□□□□ 0.45
YBX3-211ENST00000541351 CEP170Q5SW79 1584 aa17.83■□□□□ 0.45
YBX3-211ENST00000541351 PBRM1Q86U86 1689 aa17.83■□□□□ 0.44
YBX3-211ENST00000541351 ERCC6L2Q5T890 1561 aa17.81■□□□□ 0.44
YBX3-211ENST00000541351 GRIN2AQ12879 1464 aa17.8■□□□□ 0.44
YBX3-211ENST00000541351 NUP160Q12769 1436 aa17.77■□□□□ 0.44
YBX3-211ENST00000541351 MAPKBP1O60336 1514 aa17.75■□□□□ 0.43
YBX3-211ENST00000541351 SHROOM2Q13796 1616 aa17.73■□□□□ 0.43
YBX3-211ENST00000541351 FBXO41Q8TF61 875 aa17.73■□□□□ 0.43
YBX3-211ENST00000541351 CUX1P39880 1505 aa17.72■□□□□ 0.43
YBX3-211ENST00000541351 ABCA10Q8WWZ4 1543 aa17.71■□□□□ 0.43
YBX3-211ENST00000541351 DIP2BQ9P265 1576 aa17.7■□□□□ 0.42
YBX3-211ENST00000541351 ABCA5Q8WWZ7 1642 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 1224 ms