RNA–Protein interactions for RNA: ENST00000503362.1

SPCS3-201, Transcript of signal peptidase complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPCS3, Length 4,571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-201ENST00000503362 NISCHQ9Y2I1 1504 aa24.47■■□□□ 1.51
SPCS3-201ENST00000503362 DCAF8L2P0C7V8 631 aa22.94■■□□□ 1.26
SPCS3-201ENST00000503362 SUPT5HO00267 1087 aaKnown RBP22.63■■□□□ 1.21
SPCS3-201ENST00000503362 SHROOM4Q9ULL8 1493 aa22.58■■□□□ 1.21
SPCS3-201ENST00000503362 PCGF6Q9BYE7 350 aa21.4■■□□□ 1.02
SPCS3-201ENST00000503362 EHMT2Q96KQ7 1210 aa21.38■■□□□ 1.01
SPCS3-201ENST00000503362 FAM9AQ8IZU1 332 aaPredicted RBP21.15■□□□□ 0.98
SPCS3-201ENST00000503362 CHIC1Q5VXU3 224 aa21.05■□□□□ 0.96
SPCS3-201ENST00000503362 TRIM41Q8WV44 630 aa20.92■□□□□ 0.94
SPCS3-201ENST00000503362 HRCP23327 699 aa20.85■□□□□ 0.93
SPCS3-201ENST00000503362 LOC105371045A0A1W2PR82 267 aa20.82■□□□□ 0.92
SPCS3-201ENST00000503362 TTBK1Q5TCY1 1321 aaPredicted RBP20.69■□□□□ 0.9
SPCS3-201ENST00000503362 TRIM26Q12899 539 aaPredicted RBP20.61■□□□□ 0.89
SPCS3-201ENST00000503362 ZEB1P37275 1124 aaPredicted RBP20.6■□□□□ 0.89
SPCS3-201ENST00000503362 PPARGC1BQ86YN6 1023 aaKnown RBP20.55■□□□□ 0.88
SPCS3-201ENST00000503362 ZCCHC6Q5VYS8 1495 aaKnown RBP20.48■□□□□ 0.87
SPCS3-201ENST00000503362 CCER1Q8TC90 406 aaPredicted RBP20.44■□□□□ 0.86
SPCS3-201ENST00000503362 APLP2Q06481 763 aa20.4■□□□□ 0.86
SPCS3-201ENST00000503362 UBTFP17480 764 aaKnown RBP20.3■□□□□ 0.84
SPCS3-201ENST00000503362 RANGAP1P46060 587 aaPredicted RBP20.28■□□□□ 0.84
SPCS3-201ENST00000503362 CCDC180Q9P1Z9 1646 aa20.14■□□□□ 0.82
SPCS3-201ENST00000503362 MYO15BQ96JP2 1530 aa20.12■□□□□ 0.81
SPCS3-201ENST00000503362 CENPBP07199 599 aaPredicted RBP20.11■□□□□ 0.81
SPCS3-201ENST00000503362 ABCC9O60706 1549 aa20.06■□□□□ 0.8
SPCS3-201ENST00000503362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.99■□□□□ 0.79
SPCS3-201ENST00000503362 DCAF1Q9Y4B6 1507 aa19.91■□□□□ 0.78
SPCS3-201ENST00000503362 YTHDC1Q96MU7 727 aaKnown RBP19.91■□□□□ 0.78
SPCS3-201ENST00000503362 PELP1Q8IZL8 1130 aaKnown RBP19.86■□□□□ 0.77
SPCS3-201ENST00000503362 SCRIBQ14160 1630 aa19.85■□□□□ 0.77
SPCS3-201ENST00000503362 HNRNPUL2Q1KMD3 747 aaKnown RBP19.81■□□□□ 0.76
SPCS3-201ENST00000503362 ATP1B4Q9UN42 357 aaPredicted RBP19.73■□□□□ 0.75
SPCS3-201ENST00000503362 PABPN1Q86U42 306 aaKnown RBP eCLIP19.72■□□□□ 0.75
SPCS3-201ENST00000503362 DIEXFQ68CQ4 756 aaKnown RBP19.7■□□□□ 0.74
SPCS3-201ENST00000503362 RSF1Q96T23 1441 aaPredicted RBP19.64■□□□□ 0.73
SPCS3-201ENST00000503362 ITGAEP38570 1179 aa19.58■□□□□ 0.73
SPCS3-201ENST00000503362 CSRNP3Q8WYN3 585 aa19.52■□□□□ 0.72
SPCS3-201ENST00000503362 GTF3C3Q9Y5Q9 886 aa19.4■□□□□ 0.7
SPCS3-201ENST00000503362 ZNF316A6NFI3 1004 aaPredicted RBP19.34■□□□□ 0.69
SPCS3-201ENST00000503362 ACIN1Q9UKV3 1341 aaKnown RBP19.33■□□□□ 0.68
SPCS3-201ENST00000503362 CECR2Q9BXF3 1484 aa19.27■□□□□ 0.68
SPCS3-201ENST00000503362 RB1CC1Q8TDY2 1594 aa19.25■□□□□ 0.67
SPCS3-201ENST00000503362 NEFLP07196 543 aa19.24■□□□□ 0.67
SPCS3-201ENST00000503362 SCAF1Q9H7N4 1312 aaKnown RBP19.19■□□□□ 0.66
SPCS3-201ENST00000503362 NACADO15069 1562 aa19.17■□□□□ 0.66
SPCS3-201ENST00000503362 NEUROD1Q13562 356 aa19.15■□□□□ 0.66
SPCS3-201ENST00000503362 FAM50AQ14320 339 aaKnown RBP19.14■□□□□ 0.66
SPCS3-201ENST00000503362 MYT1Q01538 1121 aa19.12■□□□□ 0.65
SPCS3-201ENST00000503362 CEP162Q5TB80 1403 aa19.11■□□□□ 0.65
SPCS3-201ENST00000503362 MROH2BQ7Z745 1585 aa19.07■□□□□ 0.64
SPCS3-201ENST00000503362 ERICH6Q7L0X2 663 aa19.01■□□□□ 0.63
SPCS3-201ENST00000503362 BAZ1AQ9NRL2 1556 aaPredicted RBP18.98■□□□□ 0.63
SPCS3-201ENST00000503362 CLIP1P30622 1438 aa18.98■□□□□ 0.63
SPCS3-201ENST00000503362 P3H3Q8IVL6 736 aa18.97■□□□□ 0.63
SPCS3-201ENST00000503362 TNIKQ9UKE5 1360 aa18.97■□□□□ 0.63
SPCS3-201ENST00000503362 EEA1Q15075 1411 aa18.96■□□□□ 0.63
SPCS3-201ENST00000503362 GOLGA3Q08378 1498 aa18.94■□□□□ 0.62
SPCS3-201ENST00000503362 WRNQ14191 1432 aaPredicted RBP eCLIP18.93■□□□□ 0.62
SPCS3-201ENST00000503362 SOGA1O94964 1423 aa18.93■□□□□ 0.62
SPCS3-201ENST00000503362 MIER1Q8N108 512 aa18.92■□□□□ 0.62
SPCS3-201ENST00000503362 BCANQ96GW7 911 aa18.88■□□□□ 0.61
SPCS3-201ENST00000503362 POLR3GLQ9BT43 218 aa18.86■□□□□ 0.61
SPCS3-201ENST00000503362 WIZO95785 1651 aa18.86■□□□□ 0.61
SPCS3-201ENST00000503362 ABCC8Q09428 1581 aa18.86■□□□□ 0.61
SPCS3-201ENST00000503362 CNGB1Q14028 1251 aaPredicted RBP18.86■□□□□ 0.61
SPCS3-201ENST00000503362 CCDC88BA6NC98 1476 aa18.84■□□□□ 0.61
SPCS3-201ENST00000503362 TRIM52Q96A61 297 aa18.79■□□□□ 0.6
SPCS3-201ENST00000503362 CEP164Q9UPV0 1460 aa18.77■□□□□ 0.6
SPCS3-201ENST00000503362 ANP32CO43423 234 aa18.77■□□□□ 0.6
SPCS3-201ENST00000503362 BAZ1BQ9UIG0 1483 aaKnown RBP18.71■□□□□ 0.59
SPCS3-201ENST00000503362 DDX10Q13206 875 aaKnown RBP18.69■□□□□ 0.58
SPCS3-201ENST00000503362 ARID3CA6NKF2 412 aa18.64■□□□□ 0.58
SPCS3-201ENST00000503362 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
SPCS3-201ENST00000503362 RUSC2Q8N2Y8 1516 aa18.57■□□□□ 0.56
SPCS3-201ENST00000503362 HIRIP3Q9BW71 556 aaPredicted RBP18.56■□□□□ 0.56
SPCS3-201ENST00000503362 FKBP8Q14318 412 aa18.56■□□□□ 0.56
SPCS3-201ENST00000503362 VPS8Q8N3P4 1428 aa18.55■□□□□ 0.56
SPCS3-201ENST00000503362 TONSLQ96HA7 1378 aa18.55■□□□□ 0.56
SPCS3-201ENST00000503362 CLSPNQ9HAW4 1339 aa18.55■□□□□ 0.56
SPCS3-201ENST00000503362 KIF27Q86VH2 1401 aa18.54■□□□□ 0.56
SPCS3-201ENST00000503362 ZNF326Q5BKZ1 582 aaKnown RBP18.54■□□□□ 0.56
SPCS3-201ENST00000503362 KANK4Q5T7N3 995 aaPredicted RBP18.48■□□□□ 0.55
SPCS3-201ENST00000503362 SMARCA4P51532 1647 aa18.47■□□□□ 0.55
SPCS3-201ENST00000503362 CHIC2Q9UKJ5 165 aa18.45■□□□□ 0.54
SPCS3-201ENST00000503362 MTUS2Q5JR59 1369 aa18.42■□□□□ 0.54
SPCS3-201ENST00000503362 FBLN2P98095 1184 aa18.42■□□□□ 0.54
SPCS3-201ENST00000503362 HNRNPUQ00839 825 aaKnown RBP eCLIP18.41■□□□□ 0.54
SPCS3-201ENST00000503362 CDK11AQ9UQ88 783 aaPredicted RBP18.41■□□□□ 0.54
SPCS3-201ENST00000503362 CCNB3Q8WWL7 1395 aa18.41■□□□□ 0.54
SPCS3-201ENST00000503362 SIN3AQ96ST3 1273 aa18.41■□□□□ 0.54
SPCS3-201ENST00000503362 RAPGEF2Q9Y4G8 1499 aa18.38■□□□□ 0.53
SPCS3-201ENST00000503362 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
SPCS3-201ENST00000503362 MYT1LQ9UL68 1186 aa18.37■□□□□ 0.53
SPCS3-201ENST00000503362 ZNF777Q9ULD5 760 aaPredicted RBP18.35■□□□□ 0.53
SPCS3-201ENST00000503362 RRP7BPQ9NSQ0 103 aa18.31■□□□□ 0.52
SPCS3-201ENST00000503362 CUX2O14529 1486 aa18.31■□□□□ 0.52
SPCS3-201ENST00000503362 FAM9BQ8IZU0 186 aa18.3■□□□□ 0.52
SPCS3-201ENST00000503362 ATAD2BQ9ULI0 1458 aa18.29■□□□□ 0.52
SPCS3-201ENST00000503362 CARMIL1Q5VZK9 1371 aa18.29■□□□□ 0.52
SPCS3-201ENST00000503362 SUPT16HQ9Y5B9 1047 aaKnown RBP18.27■□□□□ 0.52
SPCS3-201ENST00000503362 IRX6P78412 446 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms