RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
MSH6-213ENST00000614496 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.05
MSH6-213ENST00000614496 SUPT5HO00267 1087 aaKnown RBP21.58■■□□□ 1.04
MSH6-213ENST00000614496 DCAF8L2P0C7V8 631 aa21.54■■□□□ 1.04
MSH6-213ENST00000614496 PCGF6Q9BYE7 350 aa20.6■□□□□ 0.89
MSH6-213ENST00000614496 EHMT2Q96KQ7 1210 aa20.36■□□□□ 0.85
MSH6-213ENST00000614496 CHIC1Q5VXU3 224 aa20.34■□□□□ 0.85
MSH6-213ENST00000614496 HRCP23327 699 aa20.23■□□□□ 0.83
MSH6-213ENST00000614496 FAM9AQ8IZU1 332 aaPredicted RBP20.15■□□□□ 0.82
MSH6-213ENST00000614496 LOC105371045A0A1W2PR82 267 aa20.13■□□□□ 0.81
MSH6-213ENST00000614496 PPARGC1BQ86YN6 1023 aaKnown RBP20.09■□□□□ 0.81
MSH6-213ENST00000614496 TRIM41Q8WV44 630 aa19.87■□□□□ 0.77
MSH6-213ENST00000614496 ZCCHC6Q5VYS8 1495 aaKnown RBP19.82■□□□□ 0.76
MSH6-213ENST00000614496 MYO15BQ96JP2 1530 aa19.8■□□□□ 0.76
MSH6-213ENST00000614496 TRIM26Q12899 539 aaPredicted RBP19.77■□□□□ 0.76
MSH6-213ENST00000614496 TTBK1Q5TCY1 1321 aaPredicted RBP19.71■□□□□ 0.75
MSH6-213ENST00000614496 ZEB1P37275 1124 aaPredicted RBP19.57■□□□□ 0.72
MSH6-213ENST00000614496 CCER1Q8TC90 406 aaPredicted RBP19.45■□□□□ 0.7
MSH6-213ENST00000614496 CCDC180Q9P1Z9 1646 aa19.41■□□□□ 0.7
MSH6-213ENST00000614496 DCAF1Q9Y4B6 1507 aa19.32■□□□□ 0.68
MSH6-213ENST00000614496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
MSH6-213ENST00000614496 RANGAP1P46060 587 aaPredicted RBP19.18■□□□□ 0.66
MSH6-213ENST00000614496 UBTFP17480 764 aaKnown RBP19.18■□□□□ 0.66
MSH6-213ENST00000614496 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
MSH6-213ENST00000614496 CENPBP07199 599 aaPredicted RBP19.07■□□□□ 0.64
MSH6-213ENST00000614496 APLP2Q06481 763 aa19.06■□□□□ 0.64
MSH6-213ENST00000614496 ABCC9O60706 1549 aa19.05■□□□□ 0.64
MSH6-213ENST00000614496 YTHDC1Q96MU7 727 aaKnown RBP19.04■□□□□ 0.64
MSH6-213ENST00000614496 PELP1Q8IZL8 1130 aaKnown RBP19.03■□□□□ 0.64
MSH6-213ENST00000614496 RSF1Q96T23 1441 aaPredicted RBP18.97■□□□□ 0.63
MSH6-213ENST00000614496 DIEXFQ68CQ4 756 aaKnown RBP18.91■□□□□ 0.62
MSH6-213ENST00000614496 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
MSH6-213ENST00000614496 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
MSH6-213ENST00000614496 GTF3C3Q9Y5Q9 886 aa18.76■□□□□ 0.59
MSH6-213ENST00000614496 ACIN1Q9UKV3 1341 aaKnown RBP18.71■□□□□ 0.59
MSH6-213ENST00000614496 PABPN1Q86U42 306 aaKnown RBP eCLIP18.7■□□□□ 0.58
MSH6-213ENST00000614496 RB1CC1Q8TDY2 1594 aa18.69■□□□□ 0.58
MSH6-213ENST00000614496 NEUROD1Q13562 356 aa18.66■□□□□ 0.58
MSH6-213ENST00000614496 CECR2Q9BXF3 1484 aa18.66■□□□□ 0.58
MSH6-213ENST00000614496 CSRNP3Q8WYN3 585 aa18.61■□□□□ 0.57
MSH6-213ENST00000614496 ITGAEP38570 1179 aa18.56■□□□□ 0.56
MSH6-213ENST00000614496 ZNF316A6NFI3 1004 aaPredicted RBP18.56■□□□□ 0.56
MSH6-213ENST00000614496 ATP1B4Q9UN42 357 aaPredicted RBP18.5■□□□□ 0.55
MSH6-213ENST00000614496 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
MSH6-213ENST00000614496 CEP162Q5TB80 1403 aa18.39■□□□□ 0.53
MSH6-213ENST00000614496 WIZO95785 1651 aa18.32■□□□□ 0.52
MSH6-213ENST00000614496 MIER1Q8N108 512 aa18.31■□□□□ 0.52
MSH6-213ENST00000614496 SOGA1O94964 1423 aa18.3■□□□□ 0.52
MSH6-213ENST00000614496 NACADO15069 1562 aa18.3■□□□□ 0.52
MSH6-213ENST00000614496 ABCC8Q09428 1581 aa18.28■□□□□ 0.52
MSH6-213ENST00000614496 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
MSH6-213ENST00000614496 TNIKQ9UKE5 1360 aa18.22■□□□□ 0.51
MSH6-213ENST00000614496 MYT1Q01538 1121 aa18.2■□□□□ 0.5
MSH6-213ENST00000614496 BAZ1AQ9NRL2 1556 aaPredicted RBP18.18■□□□□ 0.5
MSH6-213ENST00000614496 CLIP1P30622 1438 aa18.16■□□□□ 0.5
MSH6-213ENST00000614496 GOLGA3Q08378 1498 aa18.13■□□□□ 0.49
MSH6-213ENST00000614496 FAM50AQ14320 339 aaKnown RBP18.11■□□□□ 0.49
MSH6-213ENST00000614496 WRNQ14191 1432 aaPredicted RBP eCLIP18.11■□□□□ 0.49
MSH6-213ENST00000614496 BCANQ96GW7 911 aa18.1■□□□□ 0.49
MSH6-213ENST00000614496 NEFLP07196 543 aa18.09■□□□□ 0.49
MSH6-213ENST00000614496 EEA1Q15075 1411 aa18.08■□□□□ 0.49
MSH6-213ENST00000614496 RUSC2Q8N2Y8 1516 aa18.07■□□□□ 0.48
MSH6-213ENST00000614496 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
MSH6-213ENST00000614496 CEP164Q9UPV0 1460 aa17.96■□□□□ 0.47
MSH6-213ENST00000614496 TOP2AP11388 1531 aaKnown RBP17.94■□□□□ 0.46
MSH6-213ENST00000614496 DDX10Q13206 875 aaKnown RBP17.89■□□□□ 0.45
MSH6-213ENST00000614496 HIRIP3Q9BW71 556 aaPredicted RBP17.86■□□□□ 0.45
MSH6-213ENST00000614496 CNGB1Q14028 1251 aaPredicted RBP17.86■□□□□ 0.45
MSH6-213ENST00000614496 ERICH6Q7L0X2 663 aa17.85■□□□□ 0.45
MSH6-213ENST00000614496 VPS8Q8N3P4 1428 aa17.84■□□□□ 0.45
MSH6-213ENST00000614496 KANK4Q5T7N3 995 aaPredicted RBP17.83■□□□□ 0.45
MSH6-213ENST00000614496 SMARCA4P51532 1647 aa17.82■□□□□ 0.44
MSH6-213ENST00000614496 BAZ1BQ9UIG0 1483 aaKnown RBP17.81■□□□□ 0.44
MSH6-213ENST00000614496 SMARCA2P51531 1590 aa17.8■□□□□ 0.44
MSH6-213ENST00000614496 FKBP8Q14318 412 aa17.8■□□□□ 0.44
MSH6-213ENST00000614496 ANP32CO43423 234 aa17.78■□□□□ 0.44
MSH6-213ENST00000614496 RAPGEF2Q9Y4G8 1499 aa17.76■□□□□ 0.43
MSH6-213ENST00000614496 TRIM52Q96A61 297 aa17.74■□□□□ 0.43
MSH6-213ENST00000614496 POLR3GLQ9BT43 218 aa17.74■□□□□ 0.43
MSH6-213ENST00000614496 SUPT16HQ9Y5B9 1047 aaKnown RBP17.72■□□□□ 0.43
MSH6-213ENST00000614496 SIN3AQ96ST3 1273 aa17.71■□□□□ 0.43
MSH6-213ENST00000614496 CLSPNQ9HAW4 1339 aa17.66■□□□□ 0.42
MSH6-213ENST00000614496 ARID3CA6NKF2 412 aa17.65■□□□□ 0.42
MSH6-213ENST00000614496 CCNB3Q8WWL7 1395 aa17.63■□□□□ 0.41
MSH6-213ENST00000614496 KIF27Q86VH2 1401 aa17.63■□□□□ 0.41
MSH6-213ENST00000614496 DHX57Q6P158 1386 aaKnown RBP17.61■□□□□ 0.41
MSH6-213ENST00000614496 KCNH8Q96L42 1107 aa17.61■□□□□ 0.41
MSH6-213ENST00000614496 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
MSH6-213ENST00000614496 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
MSH6-213ENST00000614496 HNRNPUQ00839 825 aaKnown RBP eCLIP17.55■□□□□ 0.41e-6■□□□□ 11
MSH6-213ENST00000614496 IRX6P78412 446 aaPredicted RBP17.54■□□□□ 0.4
MSH6-213ENST00000614496 CHIC2Q9UKJ5 165 aa17.54■□□□□ 0.4
MSH6-213ENST00000614496 SYNJ1O43426 1573 aa17.53■□□□□ 0.4
MSH6-213ENST00000614496 RAB3GAP2Q9H2M9 1393 aa17.51■□□□□ 0.39
MSH6-213ENST00000614496 KIF21BO75037 1637 aa17.49■□□□□ 0.39
MSH6-213ENST00000614496 ZNF326Q5BKZ1 582 aaKnown RBP17.48■□□□□ 0.39
MSH6-213ENST00000614496 CDK11AQ9UQ88 783 aaPredicted RBP17.47■□□□□ 0.39
MSH6-213ENST00000614496 CUX2O14529 1486 aa17.46■□□□□ 0.39
MSH6-213ENST00000614496 TSHZ2Q9NRE2 1034 aa17.44■□□□□ 0.38
MSH6-213ENST00000614496 MTUS2Q5JR59 1369 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms