RNA–Protein interactions for RNA: ENST00000588352.5

GHDC-208, Transcript of GH3 domain containing, humanhuman

TSL 5

Gene GHDC, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GHDC-208ENST00000588352 NISCHQ9Y2I1 1504 aa41.46■■■■■ 4.23
GHDC-208ENST00000588352 CCDC180Q9P1Z9 1646 aa36.85■■■■□ 3.49
GHDC-208ENST00000588352 ABCC9O60706 1549 aa35.83■■■■□ 3.33
GHDC-208ENST00000588352 ZCCHC6Q5VYS8 1495 aaKnown RBP34.62■■■■□ 3.13
GHDC-208ENST00000588352 NACADO15069 1562 aa34.62■■■■□ 3.13
GHDC-208ENST00000588352 RB1CC1Q8TDY2 1594 aa34.6■■■■□ 3.13
GHDC-208ENST00000588352 MYO15BQ96JP2 1530 aa34.53■■■■□ 3.12
GHDC-208ENST00000588352 DCAF1Q9Y4B6 1507 aa34.4■■■■□ 3.1
GHDC-208ENST00000588352 DCAF8L2P0C7V8 631 aa34.34■■■■□ 3.09
GHDC-208ENST00000588352 UNC13AQ9UPW8 1703 aa33.66■■■□□ 2.98
GHDC-208ENST00000588352 SCRIBQ14160 1630 aa33.53■■■□□ 2.96
GHDC-208ENST00000588352 BICRAQ9NZM4 1560 aa33.53■■■□□ 2.96
GHDC-208ENST00000588352 PABPN1Q86U42 306 aaKnown RBP eCLIP33.43■■■□□ 2.94
GHDC-208ENST00000588352 SHROOM4Q9ULL8 1493 aa33.37■■■□□ 2.93
GHDC-208ENST00000588352 DNAJC5BQ9UF47 199 aa32.72■■■□□ 2.83
GHDC-208ENST00000588352 EIF4G1Q04637 1599 aaKnown RBP32.65■■■□□ 2.82
GHDC-208ENST00000588352 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
GHDC-208ENST00000588352 CECR2Q9BXF3 1484 aa32.23■■■□□ 2.75
GHDC-208ENST00000588352 BAZ1AQ9NRL2 1556 aaPredicted RBP32.15■■■□□ 2.74
GHDC-208ENST00000588352 SMARCA4P51532 1647 aa32.14■■■□□ 2.74
GHDC-208ENST00000588352 ATAD2BQ9ULI0 1458 aa31.95■■■□□ 2.7
GHDC-208ENST00000588352 SMARCA2P51531 1590 aa31.94■■■□□ 2.7
GHDC-208ENST00000588352 NCAPD3P42695 1498 aa31.94■■■□□ 2.7
GHDC-208ENST00000588352 MROH2BQ7Z745 1585 aa31.92■■■□□ 2.7
GHDC-208ENST00000588352 PEG3Q9GZU2 1588 aa31.9■■■□□ 2.7
GHDC-208ENST00000588352 HMGXB3Q12766 1538 aa31.83■■■□□ 2.69
GHDC-208ENST00000588352 BAZ1BQ9UIG0 1483 aaKnown RBP31.68■■■□□ 2.66
GHDC-208ENST00000588352 RSF1Q96T23 1441 aaPredicted RBP31.61■■■□□ 2.65
GHDC-208ENST00000588352 WIZO95785 1651 aa31.51■■■□□ 2.64
GHDC-208ENST00000588352 TOP2AP11388 1531 aaKnown RBP31.31■■■□□ 2.6
GHDC-208ENST00000588352 LAMC3Q9Y6N6 1575 aa31.07■■■□□ 2.56
GHDC-208ENST00000588352 NESP48681 1621 aa31.03■■■□□ 2.56
GHDC-208ENST00000588352 CADPSQ9ULU8 1353 aa30.97■■■□□ 2.55
GHDC-208ENST00000588352 ERCC6Q03468 1493 aa30.91■■■□□ 2.54
GHDC-208ENST00000588352 CCDC88BA6NC98 1476 aa30.87■■■□□ 2.53
GHDC-208ENST00000588352 CFTRP13569 1480 aa30.85■■■□□ 2.53
GHDC-208ENST00000588352 PDS5BQ9NTI5 1447 aa30.84■■■□□ 2.53
GHDC-208ENST00000588352 SUPT5HO00267 1087 aaKnown RBP30.71■■■□□ 2.51
GHDC-208ENST00000588352 KIF21AQ7Z4S6 1674 aa30.65■■■□□ 2.5
GHDC-208ENST00000588352 THOC2Q8NI27 1593 aaKnown RBP30.63■■■□□ 2.49
GHDC-208ENST00000588352 CUX2O14529 1486 aa30.63■■■□□ 2.49
GHDC-208ENST00000588352 FANCD2Q9BXW9 1451 aa30.62■■■□□ 2.49
GHDC-208ENST00000588352 CEP164Q9UPV0 1460 aa30.6■■■□□ 2.49
GHDC-208ENST00000588352 MRC2Q9UBG0 1479 aa30.54■■■□□ 2.48
GHDC-208ENST00000588352 PRDM2Q13029 1718 aa30.53■■■□□ 2.48
GHDC-208ENST00000588352 WDR62O43379 1518 aa30.46■■■□□ 2.47
GHDC-208ENST00000588352 URB2Q14146 1524 aaKnown RBP30.31■■■□□ 2.44
GHDC-208ENST00000588352 ABCC8Q09428 1581 aa30.18■■■□□ 2.42
GHDC-208ENST00000588352 TOPBP1Q92547 1522 aa30.14■■■□□ 2.42
GHDC-208ENST00000588352 DNMBPQ6XZF7 1577 aa30.14■■■□□ 2.42
GHDC-208ENST00000588352 IFT140Q96RY7 1462 aa29.96■■■□□ 2.39
GHDC-208ENST00000588352 CUX1P39880 1505 aa29.95■■■□□ 2.38
GHDC-208ENST00000588352 POLA1P09884 1462 aaPredicted RBP29.91■■■□□ 2.38
GHDC-208ENST00000588352 FGD5Q6ZNL6 1462 aa29.83■■■□□ 2.37
GHDC-208ENST00000588352 WRNQ14191 1432 aaPredicted RBP eCLIP29.81■■■□□ 2.36
GHDC-208ENST00000588352 TARBP1Q13395 1621 aaKnown RBP29.8■■■□□ 2.36
GHDC-208ENST00000588352 ZNF608Q9ULD9 1512 aaPredicted RBP29.75■■■□□ 2.35
GHDC-208ENST00000588352 TOP2BQ02880 1626 aa29.74■■■□□ 2.35
GHDC-208ENST00000588352 SOGA1O94964 1423 aa29.73■■■□□ 2.35
GHDC-208ENST00000588352 BIVM-ERCC5R4GMW8 1640 aa29.73■■■□□ 2.35
GHDC-208ENST00000588352 RAD54L2Q9Y4B4 1467 aa29.71■■■□□ 2.35
GHDC-208ENST00000588352 SYNJ1O43426 1573 aa29.71■■■□□ 2.35
GHDC-208ENST00000588352 EIF4G3O43432 1585 aaKnown RBP29.68■■■□□ 2.34
GHDC-208ENST00000588352 WDR97A6NE52 1622 aa29.67■■■□□ 2.34
GHDC-208ENST00000588352 ABCA10Q8WWZ4 1543 aa29.6■■■□□ 2.33
GHDC-208ENST00000588352 AQRO60306 1485 aaKnown RBP eCLIP29.56■■■□□ 2.32
GHDC-208ENST00000588352 TDRD9Q8NDG6 1382 aaKnown RBP29.52■■■□□ 2.32
GHDC-208ENST00000588352 ABCA5Q8WWZ7 1642 aa29.46■■■□□ 2.31
GHDC-208ENST00000588352 GRIN2BQ13224 1484 aa29.43■■■□□ 2.3
GHDC-208ENST00000588352 DNAJC5Q9H3Z4 198 aa29.43■■■□□ 2.3
GHDC-208ENST00000588352 GAPVD1Q14C86 1478 aa29.42■■■□□ 2.3
GHDC-208ENST00000588352 MAGI1Q96QZ7 1491 aaPredicted RBP29.37■■■□□ 2.29
GHDC-208ENST00000588352 SNAPC4Q5SXM2 1469 aa29.36■■■□□ 2.29
GHDC-208ENST00000588352 PBRM1Q86U86 1689 aa29.31■■■□□ 2.28
GHDC-208ENST00000588352 OSCARQ8IYS5 282 aa29.24■■■□□ 2.27
GHDC-208ENST00000588352 ERICH3Q5RHP9 1530 aa29.24■■■□□ 2.27
GHDC-208ENST00000588352 SYNJ2O15056 1496 aa29.23■■■□□ 2.27
GHDC-208ENST00000588352 KIF27Q86VH2 1401 aa29.19■■■□□ 2.26
GHDC-208ENST00000588352 CHD1O14646 1710 aa29.18■■■□□ 2.26
GHDC-208ENST00000588352 ADAMTS12P58397 1594 aa29.18■■■□□ 2.26
GHDC-208ENST00000588352 FHAD1B1AJZ9 1412 aa29.11■■■□□ 2.25
GHDC-208ENST00000588352 FBLN2P98095 1184 aa29.1■■■□□ 2.25
GHDC-208ENST00000588352 CHMP7Q8WUX9 453 aaPredicted RBP29.1■■■□□ 2.25
GHDC-208ENST00000588352 GRIN2AQ12879 1464 aa29.06■■■□□ 2.24
GHDC-208ENST00000588352 TRIM41Q8WV44 630 aa29.06■■■□□ 2.24
GHDC-208ENST00000588352 IGF1RP08069 1367 aa29.01■■■□□ 2.23
GHDC-208ENST00000588352 CLASP1Q7Z460 1538 aa29■■■□□ 2.23
GHDC-208ENST00000588352 CUL7Q14999 1698 aa28.98■■■□□ 2.23
GHDC-208ENST00000588352 NUP160Q12769 1436 aa28.95■■■□□ 2.23
GHDC-208ENST00000588352 CEP170Q5SW79 1584 aa28.88■■■□□ 2.21
GHDC-208ENST00000588352 ARHGEF11O15085 1522 aa28.85■■■□□ 2.21
GHDC-208ENST00000588352 RUSC2Q8N2Y8 1516 aa28.84■■■□□ 2.21
GHDC-208ENST00000588352 CARMIL1Q5VZK9 1371 aa28.84■■■□□ 2.21
GHDC-208ENST00000588352 RIMBP3CA6NJZ7 1639 aa28.8■■■□□ 2.2
GHDC-208ENST00000588352 RIMBP3BA6NNM3 1639 aa28.8■■■□□ 2.2
GHDC-208ENST00000588352 RIMBP3Q9UFD9 1639 aa28.8■■■□□ 2.2
GHDC-208ENST00000588352 CHIC1Q5VXU3 224 aa28.78■■■□□ 2.2
GHDC-208ENST00000588352 EEA1Q15075 1411 aa28.75■■■□□ 2.19
GHDC-208ENST00000588352 RAPGEF2Q9Y4G8 1499 aa28.71■■■□□ 2.19
GHDC-208ENST00000588352 SHROOM2Q13796 1616 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms