Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.25e-6■□□□□ 10.8
SMNDC1O75940 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.7□□□□□ -0.225e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-203ENST00000358747 2729 ntTSL 1 (best) BASIC13.55□□□□□ -0.245e-6■□□□□ 10.8
SMNDC1O75940 IMP4-204ENST00000428740 924 ntTSL 313.49□□□□□ -0.255e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-216ENST00000480865 1540 ntTSL 513.47□□□□□ -0.255e-6■□□□□ 10.8
SMNDC1O75940 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.265e-6■□□□□ 10.8
SMNDC1O75940 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.285e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-217ENST00000480524 2727 ntTSL 1 (best)13.27□□□□□ -0.285e-6■□□□□ 10.8
SMNDC1O75940 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC13.19□□□□□ -0.35e-6■□□□□ 10.8
SMNDC1O75940 LTB4R-204ENST00000553481 431 ntTSL 212.49□□□□□ -0.415e-6■□□□□ 10.8
SMNDC1O75940 RFNG-212ENST00000584838 721 ntTSL 512.43□□□□□ -0.425e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-214ENST00000469559 4720 ntTSL 212.24□□□□□ -0.455e-6■□□□□ 10.8
SMNDC1O75940 ACAD11-205ENST00000485198 2940 ntTSL 1 (best)12.21□□□□□ -0.455e-6■□□□□ 10.8
SMNDC1O75940 ACAD11-203ENST00000477604 740 ntTSL 312□□□□□ -0.495e-6■□□□□ 10.8
SMNDC1O75940 IQGAP3-203ENST00000491900 5294 ntTSL 1 (best)11.96□□□□□ -0.495e-6■□□□□ 10.8
SMNDC1O75940 IQGAP3-201ENST00000361170 5988 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.55e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.521e-6■□□□□ 10.8
SMNDC1O75940 RFNG-202ENST00000429557 994 ntTSL 5 BASIC11.48□□□□□ -0.575e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC11.42□□□□□ -0.581e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-206ENST00000428595 1419 ntTSL 1 (best)11.32□□□□□ -0.63e-37■□□□□ 10.8
SMNDC1O75940 ACAD11-202ENST00000469042 3276 ntTSL 211.28□□□□□ -0.65e-6■□□□□ 10.8
SMNDC1O75940 ACAD11-201ENST00000264990 4142 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.615e-6■□□□□ 10.8
SMNDC1O75940 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.635e-6■□□□□ 10.8
SMNDC1O75940 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC11.08□□□□□ -0.645e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC11.01□□□□□ -0.653e-37■□□□□ 10.8
SMNDC1O75940 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.653e-37■□□□□ 10.8
SMNDC1O75940 HNRNPC-204ENST00000449098 1599 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.665e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-211ENST00000452171 927 ntTSL 310.92□□□□□ -0.665e-6■□□□□ 10.8
SMNDC1O75940 IMP4-205ENST00000452955 923 ntTSL 310.92□□□□□ -0.665e-6■□□□□ 10.8
SMNDC1O75940 GTF3C2-206ENST00000454704 1440 ntTSL 1 (best)10.86□□□□□ -0.675e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-202ENST00000420743 1559 ntTSL 2 BASIC10.72□□□□□ -0.691e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-205ENST00000469172 3356 ntTSL 210.72□□□□□ -0.695e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-206ENST00000553444 724 ntTSL 210.6□□□□□ -0.715e-6■□□□□ 10.8
SMNDC1O75940 NEDD4L-201ENST00000256830 2920 ntTSL 5 BASIC10.54□□□□□ -0.725e-6■□□□□ 10.8
SMNDC1O75940 RBM17-212ENST00000496762 1585 ntTSL 29.87□□□□□ -0.835e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC9.8□□□□□ -0.843e-37■□□□□ 10.8
SMNDC1O75940 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC9.77□□□□□ -0.851e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC9.76□□□□□ -0.851e-6■□□□□ 10.8
SMNDC1O75940 RBM17-208ENST00000467080 837 ntTSL 29.69□□□□□ -0.865e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-225ENST00000556513 1403 ntTSL 5 BASIC9.68□□□□□ -0.861e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-214ENST00000554969 1924 ntAPPRIS P2 TSL 5 BASIC9.65□□□□□ -0.861e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-230ENST00000557201 1371 ntTSL 1 (best) BASIC9.63□□□□□ -0.871e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-232ENST00000557442 1308 ntTSL 29.46□□□□□ -0.91e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-219ENST00000555309 1714 ntTSL 5 BASIC9.35□□□□□ -0.911e-6■□□□□ 10.8
SMNDC1O75940 RFNG-206ENST00000580928 302 ntTSL 59.26□□□□□ -0.935e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-212ENST00000465855 684 ntTSL 39.2□□□□□ -0.943e-37■□□□□ 10.8
SMNDC1O75940 HNRNPC-208ENST00000553753 1790 ntTSL 5 BASIC9.15□□□□□ -0.941e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-222ENST00000555914 1658 ntAPPRIS ALT1 TSL 5 BASIC9.1□□□□□ -0.951e-6■□□□□ 10.8
SMNDC1O75940 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.975e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.983e-37■□□□□ 10.8
SMNDC1O75940 HNRNPC-223ENST00000556142 1599 ntTSL 5 BASIC8.86□□□□□ -0.991e-6■□□□□ 10.8
SMNDC1O75940 EHBP1-206ENST00000422032 669 ntTSL 58.74□□□□□ -1.015e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC8.7□□□□□ -1.023e-37■□□□□ 10.8
SMNDC1O75940 GTF3C2-207ENST00000457098 762 ntTSL 38.63□□□□□ -1.035e-6■□□□□ 10.8
SMNDC1O75940 GTF3C2-213ENST00000495298 1064 ntTSL 28.52□□□□□ -1.055e-6■□□□□ 10.8
SMNDC1O75940 FNBP4-216ENST00000544590 491 ntTSL 28.36□□□□□ -1.075e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-227ENST00000556897 1252 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.15e-6■□□□□ 10.8
SMNDC1O75940 ACAD11-210ENST00000510100 695 ntTSL 37.93□□□□□ -1.145e-6■□□□□ 10.8
SMNDC1O75940 FNBP4-206ENST00000527894 610 ntTSL 37.88□□□□□ -1.155e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-208ENST00000433615 1789 ntTSL 1 (best)7.87□□□□□ -1.153e-37■□□□□ 10.8
SMNDC1O75940 HNRNPC-212ENST00000554539 748 ntTSL 57.77□□□□□ -1.171e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-215ENST00000466257 706 ntTSL 37.7□□□□□ -1.185e-6■□□□□ 10.8
SMNDC1O75940 UBAP2L-215ENST00000484696 611 ntTSL 27.29□□□□□ -1.243e-37■□□□□ 10.8
SMNDC1O75940 UBAP2L-219ENST00000495676 867 ntTSL 37.08□□□□□ -1.283e-37■□□□□ 10.8
SMNDC1O75940 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC6.95□□□□□ -1.31e-6■□□□□ 10.8
SMNDC1O75940 EHBP1-218ENST00000491965 584 ntTSL 26.9□□□□□ -1.35e-6■□□□□ 10.8
SMNDC1O75940 NRDC-210ENST00000485608 3149 ntTSL 26.82□□□□□ -1.325e-6■□□□□ 10.8
SMNDC1O75940 ACAD11-209ENST00000507705 568 ntTSL 46.65□□□□□ -1.345e-6■□□□□ 10.8
SMNDC1O75940 CDK5RAP2-208ENST00000472883 389 ntTSL 36.55□□□□□ -1.365e-6■□□□□ 10.8
SMNDC1O75940 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.395e-6■□□□□ 10.8
SMNDC1O75940 ACAD11-208ENST00000496418 3684 ntTSL 26.14□□□□□ -1.435e-6■□□□□ 10.8
SMNDC1O75940 GTF3C2-203ENST00000415683 779 ntTSL 55.24□□□□□ -1.575e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-229ENST00000557157 698 ntTSL 55.14□□□□□ -1.595e-6■□□□□ 10.8
SMNDC1O75940 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.851e-6■□□□□ 10.8
SMNDC1O75940 NUP214-215ENST00000525980 2274 ntTSL 28.91□□□□□ -0.985e-9■□□□□ 10.8
SMNDC1O75940 SNORA74D-201ENST00000516404 141 ntBASIC3.02□□□□□ -1.937e-66■□□□□ 10.8
SMNDC1O75940 PLXNA3-205ENST00000482598 280 ntTSL 315.93■□□□□ 0.145e-7■□□□□ 10.8
SMNDC1O75940 PNN-206ENST00000557680 912 ntTSL 36.81□□□□□ -1.323e-10■□□□□ 10.7
SMNDC1O75940 RRP1-202ENST00000471909 2544 ntTSL 1 (best)18.06■□□□□ 0.483e-6■□□□□ 10.7
SMNDC1O75940 RRP1-201ENST00000467112 3019 ntTSL 1 (best)15.8■□□□□ 0.123e-6■□□□□ 10.7
SMNDC1O75940 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.113e-6■□□□□ 10.7
SMNDC1O75940 TMEM50B-201ENST00000420455 3062 ntTSL 1 (best)12.81□□□□□ -0.362e-7■□□□□ 10.7
SMNDC1O75940 TMEM50B-209ENST00000484377 695 ntTSL 210.09□□□□□ -0.792e-7■□□□□ 10.7
SMNDC1O75940 ZKSCAN8-204ENST00000606198 2057 ntTSL 1 (best)8.65□□□□□ -1.032e-7■□□□□ 10.7
SMNDC1O75940 TMEM50B-206ENST00000468874 724 ntTSL 58.61□□□□□ -1.032e-7■□□□□ 10.7
SMNDC1O75940 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.172e-7■□□□□ 10.7
SMNDC1O75940 ZKSCAN8-203ENST00000536028 1052 ntTSL 27.3□□□□□ -1.242e-7■□□□□ 10.7
SMNDC1O75940 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.62e-7■□□□□ 10.7
SMNDC1O75940 TMEM50B-207ENST00000470682 364 ntTSL 53.47□□□□□ -1.852e-7■□□□□ 10.7
SMNDC1O75940 MIR7111-201ENST00000619751 72 ntBASIC0.83□□□□□ -2.281e-9■□□□□ 10.7
SMNDC1O75940 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.749e-7■□□□□ 10.7
SMNDC1O75940 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.719e-7■□□□□ 10.7
SMNDC1O75940 MTSS1L-203ENST00000576338 518 ntTSL 315.7■□□□□ 0.19e-7■□□□□ 10.7
SMNDC1O75940 MTSS1L-202ENST00000562883 407 ntTSL 215.7■□□□□ 0.19e-7■□□□□ 10.7
SMNDC1O75940 RPL6-208ENST00000550566 1014 ntTSL 315.37■□□□□ 0.053e-9■□□□□ 10.7
SMNDC1O75940 RPL6-211ENST00000552455 781 ntTSL 210.52□□□□□ -0.733e-9■□□□□ 10.7
SMNDC1O75940 RPL6-209ENST00000551041 1082 ntTSL 210.25□□□□□ -0.773e-9■□□□□ 10.7
SMNDC1O75940 RPL6-206ENST00000549847 588 ntTSL 29.31□□□□□ -0.923e-9■□□□□ 10.7
SMNDC1O75940 RPL6-203ENST00000546368 2008 ntTSL 58.49□□□□□ -1.053e-9■□□□□ 10.7
SMNDC1O75940 RPL6-213ENST00000553213 438 ntTSL 57.5□□□□□ -1.213e-9■□□□□ 10.7
Retrieved 100 of 11,362 protein–RNA pairs in 187.9 ms