RNA–Protein interactions for RNA: ENST00000553444.1

HNRNPC-206, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 2

Gene HNRNPC, Length 724 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-206ENST00000553444 NISCHQ9Y2I1 1504 aa29.87■■■□□ 2.37
HNRNPC-206ENST00000553444 ABCC9O60706 1549 aa27.31■■□□□ 1.96
HNRNPC-206ENST00000553444 CCDC180Q9P1Z9 1646 aa26.83■■□□□ 1.89
HNRNPC-206ENST00000553444 DNAJC5BQ9UF47 199 aa26.02■■□□□ 1.76
HNRNPC-206ENST00000553444 RB1CC1Q8TDY2 1594 aa25.78■■□□□ 1.72
HNRNPC-206ENST00000553444 NACADO15069 1562 aa25.54■■□□□ 1.68
HNRNPC-206ENST00000553444 PABPN1Q86U42 306 aaKnown RBP eCLIP25.42■■□□□ 1.66
HNRNPC-206ENST00000553444 DCAF8L2P0C7V8 631 aa25.37■■□□□ 1.65
HNRNPC-206ENST00000553444 MYO15BQ96JP2 1530 aa25.12■■□□□ 1.61
HNRNPC-206ENST00000553444 BICRAQ9NZM4 1560 aa25.06■■□□□ 1.6
HNRNPC-206ENST00000553444 UNC13AQ9UPW8 1703 aa25.01■■□□□ 1.59
HNRNPC-206ENST00000553444 SHROOM4Q9ULL8 1493 aa24.75■■□□□ 1.55
HNRNPC-206ENST00000553444 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.54
HNRNPC-206ENST00000553444 CECR2Q9BXF3 1484 aa24.66■■□□□ 1.54
HNRNPC-206ENST00000553444 DCAF1Q9Y4B6 1507 aa24.66■■□□□ 1.54
HNRNPC-206ENST00000553444 CC2D2AQ9P2K1 1620 aa24.6■■□□□ 1.53
HNRNPC-206ENST00000553444 EIF4G1Q04637 1599 aaKnown RBP24.49■■□□□ 1.51
HNRNPC-206ENST00000553444 SCRIBQ14160 1630 aa24.48■■□□□ 1.51
HNRNPC-206ENST00000553444 DNAJC5Q9H3Z4 198 aa24.15■■□□□ 1.46
HNRNPC-206ENST00000553444 CUX2O14529 1486 aa23.7■■□□□ 1.38
HNRNPC-206ENST00000553444 NCAPD3P42695 1498 aa23.65■■□□□ 1.38
HNRNPC-206ENST00000553444 ERCC6Q03468 1493 aa23.61■■□□□ 1.37
HNRNPC-206ENST00000553444 ATAD2BQ9ULI0 1458 aa23.52■■□□□ 1.36
HNRNPC-206ENST00000553444 HMGXB3Q12766 1538 aa23.38■■□□□ 1.33
HNRNPC-206ENST00000553444 SMARCA2P51531 1590 aa23.38■■□□□ 1.33
HNRNPC-206ENST00000553444 NESP48681 1621 aa23.36■■□□□ 1.33
HNRNPC-206ENST00000553444 SMARCA4P51532 1647 aa23.31■■□□□ 1.32
HNRNPC-206ENST00000553444 BAZ1BQ9UIG0 1483 aaKnown RBP23.24■■□□□ 1.31
HNRNPC-206ENST00000553444 BAZ1AQ9NRL2 1556 aaPredicted RBP23.18■■□□□ 1.3
HNRNPC-206ENST00000553444 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.29
HNRNPC-206ENST00000553444 PEG3Q9GZU2 1588 aa23.13■■□□□ 1.29
HNRNPC-206ENST00000553444 LAMC3Q9Y6N6 1575 aa23.09■■□□□ 1.29
HNRNPC-206ENST00000553444 PDS5BQ9NTI5 1447 aa23.05■■□□□ 1.28
HNRNPC-206ENST00000553444 MROH2BQ7Z745 1585 aa23.01■■□□□ 1.27
HNRNPC-206ENST00000553444 CADPSQ9ULU8 1353 aa22.93■■□□□ 1.26
HNRNPC-206ENST00000553444 TRIM41Q8WV44 630 aa22.9■■□□□ 1.26
HNRNPC-206ENST00000553444 KIF21AQ7Z4S6 1674 aa22.89■■□□□ 1.25
HNRNPC-206ENST00000553444 MRC2Q9UBG0 1479 aa22.85■■□□□ 1.25
HNRNPC-206ENST00000553444 WDR62O43379 1518 aa22.79■■□□□ 1.24
HNRNPC-206ENST00000553444 CEP164Q9UPV0 1460 aa22.67■■□□□ 1.22
HNRNPC-206ENST00000553444 FANCD2Q9BXW9 1451 aa22.63■■□□□ 1.21
HNRNPC-206ENST00000553444 WIZO95785 1651 aa22.62■■□□□ 1.21
HNRNPC-206ENST00000553444 OSCARQ8IYS5 282 aa22.59■■□□□ 1.21
HNRNPC-206ENST00000553444 CFTRP13569 1480 aa22.58■■□□□ 1.2
HNRNPC-206ENST00000553444 URB2Q14146 1524 aaKnown RBP22.47■■□□□ 1.19
HNRNPC-206ENST00000553444 RSF1Q96T23 1441 aaPredicted RBP22.45■■□□□ 1.18
HNRNPC-206ENST00000553444 TOP2AP11388 1531 aaKnown RBP22.39■■□□□ 1.17
HNRNPC-206ENST00000553444 IFT140Q96RY7 1462 aa22.27■■□□□ 1.16
HNRNPC-206ENST00000553444 ZNF608Q9ULD9 1512 aaPredicted RBP22.26■■□□□ 1.15
HNRNPC-206ENST00000553444 RIMBP3CA6NJZ7 1639 aa22.23■■□□□ 1.15
HNRNPC-206ENST00000553444 RIMBP3BA6NNM3 1639 aa22.23■■□□□ 1.15
HNRNPC-206ENST00000553444 RIMBP3Q9UFD9 1639 aa22.23■■□□□ 1.15
HNRNPC-206ENST00000553444 ARHGEF11O15085 1522 aa22.19■■□□□ 1.14
HNRNPC-206ENST00000553444 CCDC88BA6NC98 1476 aa22.16■■□□□ 1.14
HNRNPC-206ENST00000553444 TOPBP1Q92547 1522 aa22.16■■□□□ 1.14
HNRNPC-206ENST00000553444 CYB5RLQ6IPT4 315 aa22.08■■□□□ 1.13
HNRNPC-206ENST00000553444 ABCC8Q09428 1581 aa22.07■■□□□ 1.12
HNRNPC-206ENST00000553444 PRDM2Q13029 1718 aa22.04■■□□□ 1.12
HNRNPC-206ENST00000553444 EIF4G3O43432 1585 aaKnown RBP22.04■■□□□ 1.12
HNRNPC-206ENST00000553444 AQRO60306 1485 aaKnown RBP eCLIP22.02■■□□□ 1.128e-23■■■□□ 16
HNRNPC-206ENST00000553444 DNMBPQ6XZF7 1577 aa22■■□□□ 1.11
HNRNPC-206ENST00000553444 ARAP1Q96P48 1450 aa21.97■■□□□ 1.11
HNRNPC-206ENST00000553444 FBLN2P98095 1184 aa21.94■■□□□ 1.1
HNRNPC-206ENST00000553444 TARBP1Q13395 1621 aaKnown RBP21.93■■□□□ 1.1
HNRNPC-206ENST00000553444 TRHP20396 242 aaPredicted RBP21.92■■□□□ 1.1
HNRNPC-206ENST00000553444 POLA1P09884 1462 aaPredicted RBP21.91■■□□□ 1.1
HNRNPC-206ENST00000553444 RAD54L2Q9Y4B4 1467 aa21.85■■□□□ 1.09
HNRNPC-206ENST00000553444 CHD1O14646 1710 aa21.85■■□□□ 1.09
HNRNPC-206ENST00000553444 TDRD9Q8NDG6 1382 aaKnown RBP21.85■■□□□ 1.09
HNRNPC-206ENST00000553444 SOGA1O94964 1423 aa21.81■■□□□ 1.08
HNRNPC-206ENST00000553444 SNAPC4Q5SXM2 1469 aa21.77■■□□□ 1.08
HNRNPC-206ENST00000553444 CHMP7Q8WUX9 453 aaPredicted RBP21.73■■□□□ 1.07
HNRNPC-206ENST00000553444 CLASP1Q7Z460 1538 aa21.73■■□□□ 1.07
HNRNPC-206ENST00000553444 FGD5Q6ZNL6 1462 aa21.71■■□□□ 1.07
HNRNPC-206ENST00000553444 MAGI1Q96QZ7 1491 aaPredicted RBP21.7■■□□□ 1.06
HNRNPC-206ENST00000553444 WDR97A6NE52 1622 aa21.69■■□□□ 1.06
HNRNPC-206ENST00000553444 GRIN2BQ13224 1484 aa21.67■■□□□ 1.06
HNRNPC-206ENST00000553444 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
HNRNPC-206ENST00000553444 CUX1P39880 1505 aa21.64■■□□□ 1.05
HNRNPC-206ENST00000553444 SYNJ2O15056 1496 aa21.63■■□□□ 1.05
HNRNPC-206ENST00000553444 GAPVD1Q14C86 1478 aa21.55■■□□□ 1.04
HNRNPC-206ENST00000553444 AEBP2Q6ZN18 517 aaPredicted RBP21.54■■□□□ 1.04
HNRNPC-206ENST00000553444 ABCA10Q8WWZ4 1543 aa21.47■■□□□ 1.03
HNRNPC-206ENST00000553444 ABCA5Q8WWZ7 1642 aa21.4■■□□□ 1.02
HNRNPC-206ENST00000553444 GRIN2AQ12879 1464 aa21.38■■□□□ 1.01
HNRNPC-206ENST00000553444 PBRM1Q86U86 1689 aa21.37■■□□□ 1.01
HNRNPC-206ENST00000553444 ERCC6L2Q5T890 1561 aa21.36■■□□□ 1.01
HNRNPC-206ENST00000553444 NUP160Q12769 1436 aa21.36■■□□□ 1.01
HNRNPC-206ENST00000553444 WRNQ14191 1432 aaPredicted RBP eCLIP21.31■■□□□ 1
HNRNPC-206ENST00000553444 CEP170Q5SW79 1584 aa21.3■■□□□ 1
HNRNPC-206ENST00000553444 ADAMTS12P58397 1594 aa21.28■■□□□ 1
HNRNPC-206ENST00000553444 FHAD1B1AJZ9 1412 aa21.28■■□□□ 1
HNRNPC-206ENST00000553444 SHROOM2Q13796 1616 aa21.2■□□□□ 0.98
HNRNPC-206ENST00000553444 ERICH3Q5RHP9 1530 aa21.16■□□□□ 0.98
HNRNPC-206ENST00000553444 PRG4Q92954 1404 aaPredicted RBP21.16■□□□□ 0.98
HNRNPC-206ENST00000553444 SUPT5HO00267 1087 aaKnown RBP21.16■□□□□ 0.98
HNRNPC-206ENST00000553444 TOP2BQ02880 1626 aa21.15■□□□□ 0.98
HNRNPC-206ENST00000553444 JPH4Q96JJ6 628 aa21.14■□□□□ 0.97
HNRNPC-206ENST00000553444 BIVM-ERCC5R4GMW8 1640 aa21.11■□□□□ 0.97
HNRNPC-206ENST00000553444 FAM69CQ0P6D2 419 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms