RNA–Protein interactions for RNA: ENST00000555883.5

HNRNPC-221, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 1 (best) BASIC

Gene HNRNPC, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-221ENST00000555883 NISCHQ9Y2I1 1504 aa31.72■■■□□ 2.67
HNRNPC-221ENST00000555883 CCDC180Q9P1Z9 1646 aa28.43■■■□□ 2.14
HNRNPC-221ENST00000555883 ABCC9O60706 1549 aa28.15■■■□□ 2.1
HNRNPC-221ENST00000555883 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
HNRNPC-221ENST00000555883 NACADO15069 1562 aa26.85■■□□□ 1.89
HNRNPC-221ENST00000555883 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
HNRNPC-221ENST00000555883 DCAF8L2P0C7V8 631 aa26.52■■□□□ 1.84
HNRNPC-221ENST00000555883 ZCCHC6Q5VYS8 1495 aaKnown RBP26.35■■□□□ 1.81
HNRNPC-221ENST00000555883 DCAF1Q9Y4B6 1507 aa26.32■■□□□ 1.8
HNRNPC-221ENST00000555883 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
HNRNPC-221ENST00000555883 DNAJC5BQ9UF47 199 aa26.25■■□□□ 1.79
HNRNPC-221ENST00000555883 PABPN1Q86U42 306 aaKnown RBP eCLIP26.19■■□□□ 1.78
HNRNPC-221ENST00000555883 BICRAQ9NZM4 1560 aa26.15■■□□□ 1.78
HNRNPC-221ENST00000555883 SHROOM4Q9ULL8 1493 aa25.98■■□□□ 1.75
HNRNPC-221ENST00000555883 SCRIBQ14160 1630 aa25.79■■□□□ 1.72
HNRNPC-221ENST00000555883 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
HNRNPC-221ENST00000555883 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
HNRNPC-221ENST00000555883 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
HNRNPC-221ENST00000555883 NCAPD3P42695 1498 aa24.79■■□□□ 1.56
HNRNPC-221ENST00000555883 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.54
HNRNPC-221ENST00000555883 SMARCA4P51532 1647 aa24.69■■□□□ 1.54
HNRNPC-221ENST00000555883 SMARCA2P51531 1590 aa24.67■■□□□ 1.54
HNRNPC-221ENST00000555883 BAZ1AQ9NRL2 1556 aaPredicted RBP24.63■■□□□ 1.53
HNRNPC-221ENST00000555883 HMGXB3Q12766 1538 aa24.63■■□□□ 1.53
HNRNPC-221ENST00000555883 PEG3Q9GZU2 1588 aa24.54■■□□□ 1.52
HNRNPC-221ENST00000555883 BAZ1BQ9UIG0 1483 aaKnown RBP24.45■■□□□ 1.5
HNRNPC-221ENST00000555883 MROH2BQ7Z745 1585 aa24.4■■□□□ 1.5
HNRNPC-221ENST00000555883 CUX2O14529 1486 aa24.33■■□□□ 1.49
HNRNPC-221ENST00000555883 ERCC6Q03468 1493 aa24.33■■□□□ 1.49
HNRNPC-221ENST00000555883 NESP48681 1621 aa24.22■■□□□ 1.47
HNRNPC-221ENST00000555883 LAMC3Q9Y6N6 1575 aa24.2■■□□□ 1.46
HNRNPC-221ENST00000555883 WIZO95785 1651 aa24.08■■□□□ 1.44
HNRNPC-221ENST00000555883 DNAJC5Q9H3Z4 198 aa24.07■■□□□ 1.44
HNRNPC-221ENST00000555883 PDS5BQ9NTI5 1447 aa24.05■■□□□ 1.44
HNRNPC-221ENST00000555883 THOC2Q8NI27 1593 aaKnown RBP24.02■■□□□ 1.44
HNRNPC-221ENST00000555883 CADPSQ9ULU8 1353 aa24.02■■□□□ 1.44
HNRNPC-221ENST00000555883 RSF1Q96T23 1441 aaPredicted RBP23.98■■□□□ 1.43
HNRNPC-221ENST00000555883 KIF21AQ7Z4S6 1674 aa23.92■■□□□ 1.42
HNRNPC-221ENST00000555883 TOP2AP11388 1531 aaKnown RBP23.86■■□□□ 1.41
HNRNPC-221ENST00000555883 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
HNRNPC-221ENST00000555883 CFTRP13569 1480 aa23.8■■□□□ 1.4
HNRNPC-221ENST00000555883 WDR62O43379 1518 aa23.76■■□□□ 1.39
HNRNPC-221ENST00000555883 CEP164Q9UPV0 1460 aa23.74■■□□□ 1.39
HNRNPC-221ENST00000555883 FANCD2Q9BXW9 1451 aa23.71■■□□□ 1.39
HNRNPC-221ENST00000555883 AEBP2Q6ZN18 517 aaPredicted RBP23.61■■□□□ 1.37
HNRNPC-221ENST00000555883 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
HNRNPC-221ENST00000555883 PRDM2Q13029 1718 aa23.51■■□□□ 1.35
HNRNPC-221ENST00000555883 URB2Q14146 1524 aaKnown RBP23.49■■□□□ 1.35
HNRNPC-221ENST00000555883 ABCC8Q09428 1581 aa23.32■■□□□ 1.32
HNRNPC-221ENST00000555883 IFT140Q96RY7 1462 aa23.28■■□□□ 1.32
HNRNPC-221ENST00000555883 TOPBP1Q92547 1522 aa23.28■■□□□ 1.32
HNRNPC-221ENST00000555883 DNMBPQ6XZF7 1577 aa23.23■■□□□ 1.31
HNRNPC-221ENST00000555883 OSCARQ8IYS5 282 aa23.18■■□□□ 1.3
HNRNPC-221ENST00000555883 ZNF608Q9ULD9 1512 aaPredicted RBP23.15■■□□□ 1.3
HNRNPC-221ENST00000555883 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.28
HNRNPC-221ENST00000555883 EIF4G3O43432 1585 aaKnown RBP23.06■■□□□ 1.28
HNRNPC-221ENST00000555883 POLA1P09884 1462 aaPredicted RBP23.06■■□□□ 1.28
HNRNPC-221ENST00000555883 AQRO60306 1485 aaKnown RBP eCLIP22.96■■□□□ 1.272e-7■■■■□ 24.5
HNRNPC-221ENST00000555883 WDR97A6NE52 1622 aa22.96■■□□□ 1.27
HNRNPC-221ENST00000555883 TRIM41Q8WV44 630 aa22.95■■□□□ 1.26
HNRNPC-221ENST00000555883 SOGA1O94964 1423 aa22.94■■□□□ 1.26
HNRNPC-221ENST00000555883 CUX1P39880 1505 aa22.92■■□□□ 1.26
HNRNPC-221ENST00000555883 FGD5Q6ZNL6 1462 aa22.92■■□□□ 1.26
HNRNPC-221ENST00000555883 RAD54L2Q9Y4B4 1467 aa22.91■■□□□ 1.26
HNRNPC-221ENST00000555883 SUPT5HO00267 1087 aaKnown RBP22.88■■□□□ 1.25
HNRNPC-221ENST00000555883 RIMBP3CA6NJZ7 1639 aa22.83■■□□□ 1.25
HNRNPC-221ENST00000555883 RIMBP3BA6NNM3 1639 aa22.83■■□□□ 1.25
HNRNPC-221ENST00000555883 RIMBP3Q9UFD9 1639 aa22.83■■□□□ 1.25
HNRNPC-221ENST00000555883 TDRD9Q8NDG6 1382 aaKnown RBP22.83■■□□□ 1.25
HNRNPC-221ENST00000555883 CHD1O14646 1710 aa22.81■■□□□ 1.24
HNRNPC-221ENST00000555883 ARHGEF11O15085 1522 aa22.81■■□□□ 1.24
HNRNPC-221ENST00000555883 MAGI1Q96QZ7 1491 aaPredicted RBP22.77■■□□□ 1.24
HNRNPC-221ENST00000555883 GRIN2BQ13224 1484 aa22.76■■□□□ 1.23
HNRNPC-221ENST00000555883 SNAPC4Q5SXM2 1469 aa22.75■■□□□ 1.23
HNRNPC-221ENST00000555883 ABCA10Q8WWZ4 1543 aa22.72■■□□□ 1.23
HNRNPC-221ENST00000555883 FBLN2P98095 1184 aa22.71■■□□□ 1.23
HNRNPC-221ENST00000555883 GAPVD1Q14C86 1478 aa22.68■■□□□ 1.22
HNRNPC-221ENST00000555883 SYNJ2O15056 1496 aa22.67■■□□□ 1.22
HNRNPC-221ENST00000555883 ABCA5Q8WWZ7 1642 aa22.65■■□□□ 1.22
HNRNPC-221ENST00000555883 CHMP7Q8WUX9 453 aaPredicted RBP22.65■■□□□ 1.22
HNRNPC-221ENST00000555883 WRNQ14191 1432 aaPredicted RBP eCLIP22.65■■□□□ 1.22
HNRNPC-221ENST00000555883 CLASP1Q7Z460 1538 aa22.64■■□□□ 1.21
HNRNPC-221ENST00000555883 TOP2BQ02880 1626 aa22.64■■□□□ 1.21
HNRNPC-221ENST00000555883 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
HNRNPC-221ENST00000555883 BIVM-ERCC5R4GMW8 1640 aa22.63■■□□□ 1.21
HNRNPC-221ENST00000555883 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
HNRNPC-221ENST00000555883 ARAP1Q96P48 1450 aa22.59■■□□□ 1.21
HNRNPC-221ENST00000555883 CYB5RLQ6IPT4 315 aa22.55■■□□□ 1.2
HNRNPC-221ENST00000555883 GRIN2AQ12879 1464 aa22.46■■□□□ 1.19
HNRNPC-221ENST00000555883 ADAMTS12P58397 1594 aa22.46■■□□□ 1.19
HNRNPC-221ENST00000555883 ERICH3Q5RHP9 1530 aa22.45■■□□□ 1.18
HNRNPC-221ENST00000555883 FHAD1B1AJZ9 1412 aa22.42■■□□□ 1.18
HNRNPC-221ENST00000555883 NUP160Q12769 1436 aa22.4■■□□□ 1.18
HNRNPC-221ENST00000555883 CEP170Q5SW79 1584 aa22.33■■□□□ 1.17
HNRNPC-221ENST00000555883 SHROOM2Q13796 1616 aa22.28■■□□□ 1.16
HNRNPC-221ENST00000555883 TRHP20396 242 aaPredicted RBP22.23■■□□□ 1.15
HNRNPC-221ENST00000555883 ERCC6L2Q5T890 1561 aa22.21■■□□□ 1.15
HNRNPC-221ENST00000555883 KIF27Q86VH2 1401 aa22.19■■□□□ 1.14
HNRNPC-221ENST00000555883 IGF1RP08069 1367 aa22.15■■□□□ 1.14
HNRNPC-221ENST00000555883 RUSC2Q8N2Y8 1516 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms