RNA–Protein interactions for RNA: ENST00000556628.5

HNRNPC-226, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 1 (best) BASIC

Gene HNRNPC, Length 1,156 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-226ENST00000556628 AEBP2Q6ZN18 517 aaPredicted RBP23.74■■□□□ 1.39
HNRNPC-226ENST00000556628 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
HNRNPC-226ENST00000556628 SENP3Q9H4L4 574 aaPredicted RBP20.35■□□□□ 0.85
HNRNPC-226ENST00000556628 PHF23Q9BUL5 403 aaPredicted RBP20.03■□□□□ 0.8
HNRNPC-226ENST00000556628 FOXD1Q16676 465 aa18.94■□□□□ 0.62
HNRNPC-226ENST00000556628 NISCHQ9Y2I1 1504 aa18.92■□□□□ 0.62
HNRNPC-226ENST00000556628 PLPPR3Q6T4P5 718 aa17.88■□□□□ 0.45
HNRNPC-226ENST00000556628 MSH5O43196 834 aa17.84■□□□□ 0.45
HNRNPC-226ENST00000556628 PIAS4Q8N2W9 510 aaPredicted RBP17.69■□□□□ 0.42
HNRNPC-226ENST00000556628 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
HNRNPC-226ENST00000556628 PPP6R1Q9UPN7 881 aa17.57■□□□□ 0.4
HNRNPC-226ENST00000556628 ADRA2BP18089 450 aa17.52■□□□□ 0.4
HNRNPC-226ENST00000556628 CCDC180Q9P1Z9 1646 aa16.96■□□□□ 0.31
HNRNPC-226ENST00000556628 ABCC9O60706 1549 aa16.8■□□□□ 0.28
HNRNPC-226ENST00000556628 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
HNRNPC-226ENST00000556628 SCAF1Q9H7N4 1312 aaKnown RBP16.11■□□□□ 0.17
HNRNPC-226ENST00000556628 DMRT2Q9Y5R5 561 aa16.09■□□□□ 0.17
HNRNPC-226ENST00000556628 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
HNRNPC-226ENST00000556628 NACADO15069 1562 aa15.99■□□□□ 0.15
HNRNPC-226ENST00000556628 DCAF8L2P0C7V8 631 aa15.97■□□□□ 0.15
HNRNPC-226ENST00000556628 MYO15BQ96JP2 1530 aa15.79■□□□□ 0.12
HNRNPC-226ENST00000556628 UNC13AQ9UPW8 1703 aa15.71■□□□□ 0.1
HNRNPC-226ENST00000556628 ZCCHC6Q5VYS8 1495 aaKnown RBP15.7■□□□□ 0.1
HNRNPC-226ENST00000556628 DCAF1Q9Y4B6 1507 aa15.64■□□□□ 0.09
HNRNPC-226ENST00000556628 PABPN1Q86U42 306 aaKnown RBP eCLIP15.64■□□□□ 0.09
HNRNPC-226ENST00000556628 PPP4R3CPQ6ZMV5 832 aa15.63■□□□□ 0.09
HNRNPC-226ENST00000556628 DNAJC5BQ9UF47 199 aa15.55■□□□□ 0.08
HNRNPC-226ENST00000556628 BICRAQ9NZM4 1560 aa15.54■□□□□ 0.08
HNRNPC-226ENST00000556628 DCAF8L1A6NGE4 600 aa15.46■□□□□ 0.07
HNRNPC-226ENST00000556628 SCRIBQ14160 1630 aa15.45■□□□□ 0.06
HNRNPC-226ENST00000556628 HOXD11P31277 338 aaPredicted RBP15.44■□□□□ 0.06
HNRNPC-226ENST00000556628 SHROOM4Q9ULL8 1493 aa15.4■□□□□ 0.06
HNRNPC-226ENST00000556628 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
HNRNPC-226ENST00000556628 CACNB1Q02641 598 aaPredicted RBP15.39■□□□□ 0.05
HNRNPC-226ENST00000556628 RNF216Q9NWF9 866 aaPredicted RBP15.3■□□□□ 0.04
HNRNPC-226ENST00000556628 CC2D2AQ9P2K1 1620 aa15.18■□□□□ 0.02
HNRNPC-226ENST00000556628 RNF39Q9H2S5 420 aa15.18■□□□□ 0.02
HNRNPC-226ENST00000556628 EIF4G1Q04637 1599 aaKnown RBP15.18■□□□□ 0.02
HNRNPC-226ENST00000556628 CECR2Q9BXF3 1484 aa15.12■□□□□ 0.01
HNRNPC-226ENST00000556628 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
HNRNPC-226ENST00000556628 C1QBPQ07021 282 aaKnown RBP14.97□□□□□ -0.01
HNRNPC-226ENST00000556628 NPM3O75607 178 aaKnown RBP14.76□□□□□ -0.05
HNRNPC-226ENST00000556628 SMARCA4P51532 1647 aa14.74□□□□□ -0.05
HNRNPC-226ENST00000556628 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.73□□□□□ -0.052e-26■■□□□ 11.8
HNRNPC-226ENST00000556628 NCAPD3P42695 1498 aa14.73□□□□□ -0.05
HNRNPC-226ENST00000556628 SMARCA2P51531 1590 aa14.71□□□□□ -0.05
HNRNPC-226ENST00000556628 BAZ1AQ9NRL2 1556 aaPredicted RBP14.71□□□□□ -0.05
HNRNPC-226ENST00000556628 ATAD2BQ9ULI0 1458 aa14.69□□□□□ -0.06
HNRNPC-226ENST00000556628 HMGXB3Q12766 1538 aa14.66□□□□□ -0.06
HNRNPC-226ENST00000556628 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
HNRNPC-226ENST00000556628 PEG3Q9GZU2 1588 aa14.58□□□□□ -0.08
HNRNPC-226ENST00000556628 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
HNRNPC-226ENST00000556628 ERCC6Q03468 1493 aa14.54□□□□□ -0.08
HNRNPC-226ENST00000556628 NESP48681 1621 aa14.44□□□□□ -0.1
HNRNPC-226ENST00000556628 CUX2O14529 1486 aa14.44□□□□□ -0.1
HNRNPC-226ENST00000556628 WIZO95785 1651 aa14.42□□□□□ -0.1
HNRNPC-226ENST00000556628 LAMC3Q9Y6N6 1575 aa14.42□□□□□ -0.1
HNRNPC-226ENST00000556628 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
HNRNPC-226ENST00000556628 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
HNRNPC-226ENST00000556628 KCNA4P22459 653 aa14.32□□□□□ -0.12
HNRNPC-226ENST00000556628 KIF21AQ7Z4S6 1674 aa14.31□□□□□ -0.12
HNRNPC-226ENST00000556628 RSF1Q96T23 1441 aaPredicted RBP14.31□□□□□ -0.12
HNRNPC-226ENST00000556628 CADPSQ9ULU8 1353 aa14.3□□□□□ -0.12
HNRNPC-226ENST00000556628 THOC2Q8NI27 1593 aaKnown RBP14.29□□□□□ -0.12
HNRNPC-226ENST00000556628 TOP2AP11388 1531 aaKnown RBP14.25□□□□□ -0.13
HNRNPC-226ENST00000556628 DNAJC5Q9H3Z4 198 aa14.24□□□□□ -0.13
HNRNPC-226ENST00000556628 CAPN15O75808 1086 aa14.22□□□□□ -0.13
HNRNPC-226ENST00000556628 SPINK5Q9NQ38 1064 aaPredicted RBP14.2□□□□□ -0.14
HNRNPC-226ENST00000556628 MRC2Q9UBG0 1479 aa14.18□□□□□ -0.14
HNRNPC-226ENST00000556628 CEP164Q9UPV0 1460 aa14.17□□□□□ -0.14
HNRNPC-226ENST00000556628 CFTRP13569 1480 aa14.15□□□□□ -0.14
HNRNPC-226ENST00000556628 DSG3P32926 999 aa14.15□□□□□ -0.14
HNRNPC-226ENST00000556628 FANCD2Q9BXW9 1451 aa14.14□□□□□ -0.15
HNRNPC-226ENST00000556628 WDR62O43379 1518 aa14.12□□□□□ -0.15
HNRNPC-226ENST00000556628 SLC4A2P04920 1241 aa14.12□□□□□ -0.15
HNRNPC-226ENST00000556628 PRDM2Q13029 1718 aa14.1□□□□□ -0.15
HNRNPC-226ENST00000556628 CCDC88BA6NC98 1476 aa14.06□□□□□ -0.16
HNRNPC-226ENST00000556628 APLP2Q06481 763 aa14.04□□□□□ -0.16
HNRNPC-226ENST00000556628 URB2Q14146 1524 aaKnown RBP13.99□□□□□ -0.17
HNRNPC-226ENST00000556628 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.97□□□□□ -0.17
HNRNPC-226ENST00000556628 HNRNPUL2Q1KMD3 747 aaKnown RBP13.97□□□□□ -0.17
HNRNPC-226ENST00000556628 TRHP20396 242 aaPredicted RBP13.95□□□□□ -0.18
HNRNPC-226ENST00000556628 ZNF219Q9P2Y4 722 aaPredicted RBP13.94□□□□□ -0.18
HNRNPC-226ENST00000556628 ABCC8Q09428 1581 aa13.91□□□□□ -0.18
HNRNPC-226ENST00000556628 TOPBP1Q92547 1522 aa13.89□□□□□ -0.19
HNRNPC-226ENST00000556628 IFT140Q96RY7 1462 aa13.87□□□□□ -0.19
HNRNPC-226ENST00000556628 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
HNRNPC-226ENST00000556628 DNMBPQ6XZF7 1577 aa13.87□□□□□ -0.19
HNRNPC-226ENST00000556628 ABCB7O75027 752 aa13.86□□□□□ -0.19
HNRNPC-226ENST00000556628 SUPT5HO00267 1087 aaKnown RBP13.83□□□□□ -0.2
HNRNPC-226ENST00000556628 POTEHQ6S545 545 aa13.81□□□□□ -0.2
HNRNPC-226ENST00000556628 OSCARQ8IYS5 282 aa13.81□□□□□ -0.2
HNRNPC-226ENST00000556628 ZNF608Q9ULD9 1512 aaPredicted RBP13.79□□□□□ -0.2
HNRNPC-226ENST00000556628 EIF4G3O43432 1585 aaKnown RBP13.76□□□□□ -0.21
HNRNPC-226ENST00000556628 TARBP1Q13395 1621 aaKnown RBP13.75□□□□□ -0.21
HNRNPC-226ENST00000556628 POLA1P09884 1462 aaPredicted RBP13.74□□□□□ -0.21
HNRNPC-226ENST00000556628 TRIM41Q8WV44 630 aa13.72□□□□□ -0.21
HNRNPC-226ENST00000556628 SOGA1O94964 1423 aa13.71□□□□□ -0.22
HNRNPC-226ENST00000556628 AQRO60306 1485 aaKnown RBP eCLIP13.69□□□□□ -0.222e-7■■■■□ 24.5
HNRNPC-226ENST00000556628 FGD5Q6ZNL6 1462 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms