RNA–Protein interactions for RNA: ENST00000556142.5

HNRNPC-223, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 5 BASIC

Gene HNRNPC, Length 1,599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-223ENST00000556142 NISCHQ9Y2I1 1504 aa21.43■■□□□ 1.02
HNRNPC-223ENST00000556142 AEBP2Q6ZN18 517 aaPredicted RBP20.37■□□□□ 0.85
HNRNPC-223ENST00000556142 CHIC1Q5VXU3 224 aa19.36■□□□□ 0.69
HNRNPC-223ENST00000556142 ABCC9O60706 1549 aa18.92■□□□□ 0.62
HNRNPC-223ENST00000556142 CCDC180Q9P1Z9 1646 aa18.6■□□□□ 0.57
HNRNPC-223ENST00000556142 DNAJC5BQ9UF47 199 aa18.11■□□□□ 0.49
HNRNPC-223ENST00000556142 ZCCHC6Q5VYS8 1495 aaKnown RBP18.02■□□□□ 0.48
HNRNPC-223ENST00000556142 RB1CC1Q8TDY2 1594 aa17.82■□□□□ 0.44
HNRNPC-223ENST00000556142 DCAF1Q9Y4B6 1507 aa17.74■□□□□ 0.43
HNRNPC-223ENST00000556142 DCAF8L2P0C7V8 631 aa17.59■□□□□ 0.41
HNRNPC-223ENST00000556142 NACADO15069 1562 aa17.59■□□□□ 0.41
HNRNPC-223ENST00000556142 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
HNRNPC-223ENST00000556142 MYO15BQ96JP2 1530 aa17.51■□□□□ 0.39
HNRNPC-223ENST00000556142 SHROOM4Q9ULL8 1493 aa17.47■□□□□ 0.39
HNRNPC-223ENST00000556142 SENP3Q9H4L4 574 aaPredicted RBP17.43■□□□□ 0.38
HNRNPC-223ENST00000556142 UNC13AQ9UPW8 1703 aa17.38■□□□□ 0.37
HNRNPC-223ENST00000556142 BICRAQ9NZM4 1560 aa17.3■□□□□ 0.36
HNRNPC-223ENST00000556142 PHF23Q9BUL5 403 aaPredicted RBP17.17■□□□□ 0.34
HNRNPC-223ENST00000556142 SCRIBQ14160 1630 aa17.1■□□□□ 0.33
HNRNPC-223ENST00000556142 CECR2Q9BXF3 1484 aa17.09■□□□□ 0.33
HNRNPC-223ENST00000556142 CC2D2AQ9P2K1 1620 aa17.05■□□□□ 0.32
HNRNPC-223ENST00000556142 DNAJC5Q9H3Z4 198 aa16.96■□□□□ 0.31
HNRNPC-223ENST00000556142 EIF4G1Q04637 1599 aaKnown RBP16.92■□□□□ 0.3
HNRNPC-223ENST00000556142 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
HNRNPC-223ENST00000556142 RSF1Q96T23 1441 aaPredicted RBP16.67■□□□□ 0.26
HNRNPC-223ENST00000556142 MROH2BQ7Z745 1585 aa16.57■□□□□ 0.24
HNRNPC-223ENST00000556142 BAZ1AQ9NRL2 1556 aaPredicted RBP16.5■□□□□ 0.23
HNRNPC-223ENST00000556142 CUX2O14529 1486 aa16.49■□□□□ 0.23
HNRNPC-223ENST00000556142 SMARCA4P51532 1647 aa16.43■□□□□ 0.22
HNRNPC-223ENST00000556142 WIZO95785 1651 aa16.4■□□□□ 0.22
HNRNPC-223ENST00000556142 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
HNRNPC-223ENST00000556142 PEG3Q9GZU2 1588 aa16.27■□□□□ 0.19
HNRNPC-223ENST00000556142 NCAPD3P42695 1498 aa16.25■□□□□ 0.19
HNRNPC-223ENST00000556142 TOP2AP11388 1531 aaKnown RBP16.24■□□□□ 0.19
HNRNPC-223ENST00000556142 FOXD1Q16676 465 aa16.21■□□□□ 0.18
HNRNPC-223ENST00000556142 ATAD2BQ9ULI0 1458 aa16.19■□□□□ 0.18
HNRNPC-223ENST00000556142 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
HNRNPC-223ENST00000556142 NESP48681 1621 aa16.12■□□□□ 0.17
HNRNPC-223ENST00000556142 CCDC88BA6NC98 1476 aa16.11■□□□□ 0.17
HNRNPC-223ENST00000556142 HMGXB3Q12766 1538 aa16.09■□□□□ 0.17
HNRNPC-223ENST00000556142 TRIM41Q8WV44 630 aa16.05■□□□□ 0.16
HNRNPC-223ENST00000556142 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
HNRNPC-223ENST00000556142 THOC2Q8NI27 1593 aaKnown RBP16.04■□□□□ 0.16
HNRNPC-223ENST00000556142 LAMC3Q9Y6N6 1575 aa15.95■□□□□ 0.14
HNRNPC-223ENST00000556142 KIF21AQ7Z4S6 1674 aa15.89■□□□□ 0.13
HNRNPC-223ENST00000556142 PDS5BQ9NTI5 1447 aa15.88■□□□□ 0.13
HNRNPC-223ENST00000556142 MRC2Q9UBG0 1479 aa15.77■□□□□ 0.11
HNRNPC-223ENST00000556142 ABCC8Q09428 1581 aa15.75■□□□□ 0.11
HNRNPC-223ENST00000556142 CADPSQ9ULU8 1353 aa15.74■□□□□ 0.11
HNRNPC-223ENST00000556142 WDR62O43379 1518 aa15.74■□□□□ 0.11
HNRNPC-223ENST00000556142 CFTRP13569 1480 aa15.7■□□□□ 0.1
HNRNPC-223ENST00000556142 OSCARQ8IYS5 282 aa15.67■□□□□ 0.1
HNRNPC-223ENST00000556142 WRNQ14191 1432 aaPredicted RBP eCLIP15.65■□□□□ 0.1
HNRNPC-223ENST00000556142 CEP164Q9UPV0 1460 aa15.62■□□□□ 0.09
HNRNPC-223ENST00000556142 LOC105371045A0A1W2PR82 267 aa15.61■□□□□ 0.09
HNRNPC-223ENST00000556142 SYNJ1O43426 1573 aa15.58■□□□□ 0.09
HNRNPC-223ENST00000556142 FANCD2Q9BXW9 1451 aa15.56■□□□□ 0.08
HNRNPC-223ENST00000556142 FAM9AQ8IZU1 332 aaPredicted RBP15.53■□□□□ 0.08
HNRNPC-223ENST00000556142 PRDM2Q13029 1718 aa15.52■□□□□ 0.07
HNRNPC-223ENST00000556142 TOP2BQ02880 1626 aa15.51■□□□□ 0.07
HNRNPC-223ENST00000556142 SOGA1O94964 1423 aa15.51■□□□□ 0.07
HNRNPC-223ENST00000556142 RIMBP3CA6NJZ7 1639 aa15.49■□□□□ 0.07
HNRNPC-223ENST00000556142 RIMBP3BA6NNM3 1639 aa15.49■□□□□ 0.07
HNRNPC-223ENST00000556142 RIMBP3Q9UFD9 1639 aa15.49■□□□□ 0.07
HNRNPC-223ENST00000556142 BIVM-ERCC5R4GMW8 1640 aa15.49■□□□□ 0.07
HNRNPC-223ENST00000556142 CUX1P39880 1505 aa15.48■□□□□ 0.07
HNRNPC-223ENST00000556142 PLPPR3Q6T4P5 718 aa15.48■□□□□ 0.07
HNRNPC-223ENST00000556142 RUSC2Q8N2Y8 1516 aa15.46■□□□□ 0.07
HNRNPC-223ENST00000556142 EEA1Q15075 1411 aa15.46■□□□□ 0.06
HNRNPC-223ENST00000556142 URB2Q14146 1524 aaKnown RBP15.45■□□□□ 0.06
HNRNPC-223ENST00000556142 ARHGEF11O15085 1522 aa15.4■□□□□ 0.06
HNRNPC-223ENST00000556142 CSRNP3Q8WYN3 585 aa15.4■□□□□ 0.06
HNRNPC-223ENST00000556142 CYB5RLQ6IPT4 315 aa15.33■□□□□ 0.05
HNRNPC-223ENST00000556142 ZNF608Q9ULD9 1512 aaPredicted RBP15.33■□□□□ 0.04
HNRNPC-223ENST00000556142 IFT140Q96RY7 1462 aa15.32■□□□□ 0.04
HNRNPC-223ENST00000556142 TRHP20396 242 aaPredicted RBP15.32■□□□□ 0.04
HNRNPC-223ENST00000556142 EHMT2Q96KQ7 1210 aa15.28■□□□□ 0.04
HNRNPC-223ENST00000556142 DNMBPQ6XZF7 1577 aa15.28■□□□□ 0.04
HNRNPC-223ENST00000556142 FGD5Q6ZNL6 1462 aa15.28■□□□□ 0.04
HNRNPC-223ENST00000556142 TOPBP1Q92547 1522 aa15.27■□□□□ 0.03
HNRNPC-223ENST00000556142 TNIKQ9UKE5 1360 aa15.25■□□□□ 0.03
HNRNPC-223ENST00000556142 KIF21BO75037 1637 aa15.24■□□□□ 0.03
HNRNPC-223ENST00000556142 GOLGA3Q08378 1498 aa15.23■□□□□ 0.03
HNRNPC-223ENST00000556142 KIF27Q86VH2 1401 aa15.23■□□□□ 0.03
HNRNPC-223ENST00000556142 ARAP1Q96P48 1450 aa15.23■□□□□ 0.03
HNRNPC-223ENST00000556142 EIF4G3O43432 1585 aaKnown RBP15.22■□□□□ 0.03
HNRNPC-223ENST00000556142 MSH5O43196 834 aa15.21■□□□□ 0.03
HNRNPC-223ENST00000556142 PRXQ9BXM0 1461 aa15.21■□□□□ 0.02
HNRNPC-223ENST00000556142 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
HNRNPC-223ENST00000556142 CHD1O14646 1710 aa15.18■□□□□ 0.02
HNRNPC-223ENST00000556142 RAPGEF2Q9Y4G8 1499 aa15.17■□□□□ 0.02
HNRNPC-223ENST00000556142 RAD54L2Q9Y4B4 1467 aa15.16■□□□□ 0.02
HNRNPC-223ENST00000556142 IGF1RP08069 1367 aa15.16■□□□□ 0.02
HNRNPC-223ENST00000556142 PIAS4Q8N2W9 510 aaPredicted RBP15.16■□□□□ 0.02
HNRNPC-223ENST00000556142 ABCA10Q8WWZ4 1543 aa15.16■□□□□ 0.02
HNRNPC-223ENST00000556142 FBLN2P98095 1184 aa15.15■□□□□ 0.02
HNRNPC-223ENST00000556142 AQRO60306 1485 aaKnown RBP eCLIP15.15■□□□□ 0.022e-7■■■■□ 24.5
HNRNPC-223ENST00000556142 ERICH3Q5RHP9 1530 aa15.13■□□□□ 0.01
HNRNPC-223ENST00000556142 UBTFP17480 764 aaKnown RBP15.13■□□□□ 0.01
HNRNPC-223ENST00000556142 PPP6R1Q9UPN7 881 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms