RNA–Protein interactions for RNA: ENST00000555309.5

HNRNPC-219, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 5 BASIC

Gene HNRNPC, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-219ENST00000555309 NISCHQ9Y2I1 1504 aa24.59■■□□□ 1.53
HNRNPC-219ENST00000555309 CCDC180Q9P1Z9 1646 aa21.83■■□□□ 1.08
HNRNPC-219ENST00000555309 ABCC9O60706 1549 aa21.74■■□□□ 1.07
HNRNPC-219ENST00000555309 DCAF8L2P0C7V8 631 aa20.78■□□□□ 0.92
HNRNPC-219ENST00000555309 RB1CC1Q8TDY2 1594 aa20.68■□□□□ 0.9
HNRNPC-219ENST00000555309 NACADO15069 1562 aa20.6■□□□□ 0.89
HNRNPC-219ENST00000555309 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
HNRNPC-219ENST00000555309 MYO15BQ96JP2 1530 aa20.37■□□□□ 0.85
HNRNPC-219ENST00000555309 PABPN1Q86U42 306 aaKnown RBP eCLIP20.36■□□□□ 0.85
HNRNPC-219ENST00000555309 UNC13AQ9UPW8 1703 aa20.28■□□□□ 0.84
HNRNPC-219ENST00000555309 DCAF1Q9Y4B6 1507 aa20.24■□□□□ 0.83
HNRNPC-219ENST00000555309 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
HNRNPC-219ENST00000555309 BICRAQ9NZM4 1560 aa20.16■□□□□ 0.82
HNRNPC-219ENST00000555309 SCRIBQ14160 1630 aa20.05■□□□□ 0.8
HNRNPC-219ENST00000555309 SHROOM4Q9ULL8 1493 aa19.72■□□□□ 0.75
HNRNPC-219ENST00000555309 EIF4G1Q04637 1599 aaKnown RBP19.61■□□□□ 0.73
HNRNPC-219ENST00000555309 CC2D2AQ9P2K1 1620 aa19.59■□□□□ 0.73
HNRNPC-219ENST00000555309 CECR2Q9BXF3 1484 aa19.49■□□□□ 0.71
HNRNPC-219ENST00000555309 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
HNRNPC-219ENST00000555309 ATAD2BQ9ULI0 1458 aa19.08■□□□□ 0.65
HNRNPC-219ENST00000555309 NCAPD3P42695 1498 aa19.07■□□□□ 0.64
HNRNPC-219ENST00000555309 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.64
HNRNPC-219ENST00000555309 BAZ1AQ9NRL2 1556 aaPredicted RBP19.02■□□□□ 0.64
HNRNPC-219ENST00000555309 SMARCA2P51531 1590 aa18.96■□□□□ 0.63
HNRNPC-219ENST00000555309 HMGXB3Q12766 1538 aa18.9■□□□□ 0.62
HNRNPC-219ENST00000555309 BAZ1BQ9UIG0 1483 aaKnown RBP18.89■□□□□ 0.61
HNRNPC-219ENST00000555309 PEG3Q9GZU2 1588 aa18.87■□□□□ 0.61
HNRNPC-219ENST00000555309 WIZO95785 1651 aa18.8■□□□□ 0.6
HNRNPC-219ENST00000555309 NESP48681 1621 aa18.78■□□□□ 0.6
HNRNPC-219ENST00000555309 RSF1Q96T23 1441 aaPredicted RBP18.72■□□□□ 0.59
HNRNPC-219ENST00000555309 ERCC6Q03468 1493 aa18.67■□□□□ 0.58
HNRNPC-219ENST00000555309 LAMC3Q9Y6N6 1575 aa18.54■□□□□ 0.56
HNRNPC-219ENST00000555309 CADPSQ9ULU8 1353 aa18.53■□□□□ 0.56
HNRNPC-219ENST00000555309 TOP2AP11388 1531 aaKnown RBP18.5■□□□□ 0.55
HNRNPC-219ENST00000555309 CUX2O14529 1486 aa18.47■□□□□ 0.55
HNRNPC-219ENST00000555309 KIF21AQ7Z4S6 1674 aa18.47■□□□□ 0.55
HNRNPC-219ENST00000555309 PDS5BQ9NTI5 1447 aa18.44■□□□□ 0.54
HNRNPC-219ENST00000555309 THOC2Q8NI27 1593 aaKnown RBP18.43■□□□□ 0.54
HNRNPC-219ENST00000555309 CCDC88BA6NC98 1476 aa18.36■□□□□ 0.53
HNRNPC-219ENST00000555309 CFTRP13569 1480 aa18.36■□□□□ 0.53
HNRNPC-219ENST00000555309 FANCD2Q9BXW9 1451 aa18.31■□□□□ 0.52
HNRNPC-219ENST00000555309 MRC2Q9UBG0 1479 aa18.29■□□□□ 0.52
HNRNPC-219ENST00000555309 CEP164Q9UPV0 1460 aa18.27■□□□□ 0.52
HNRNPC-219ENST00000555309 DNAJC5Q9H3Z4 198 aa18.24■□□□□ 0.51
HNRNPC-219ENST00000555309 WDR62O43379 1518 aa18.22■□□□□ 0.51
HNRNPC-219ENST00000555309 SUPT5HO00267 1087 aaKnown RBP18.2■□□□□ 0.5
HNRNPC-219ENST00000555309 URB2Q14146 1524 aaKnown RBP18.18■□□□□ 0.5
HNRNPC-219ENST00000555309 PRDM2Q13029 1718 aa18.11■□□□□ 0.49
HNRNPC-219ENST00000555309 TOPBP1Q92547 1522 aa18■□□□□ 0.47
HNRNPC-219ENST00000555309 ZNF608Q9ULD9 1512 aaPredicted RBP17.95■□□□□ 0.46
HNRNPC-219ENST00000555309 DNMBPQ6XZF7 1577 aa17.92■□□□□ 0.46
HNRNPC-219ENST00000555309 IFT140Q96RY7 1462 aa17.89■□□□□ 0.45
HNRNPC-219ENST00000555309 ABCC8Q09428 1581 aa17.88■□□□□ 0.45
HNRNPC-219ENST00000555309 POLA1P09884 1462 aaPredicted RBP17.85■□□□□ 0.45
HNRNPC-219ENST00000555309 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
HNRNPC-219ENST00000555309 CUX1P39880 1505 aa17.83■□□□□ 0.44
HNRNPC-219ENST00000555309 AQRO60306 1485 aaKnown RBP eCLIP17.82■□□□□ 0.442e-7■■■■□ 24.5
HNRNPC-219ENST00000555309 TARBP1Q13395 1621 aaKnown RBP17.82■□□□□ 0.44
HNRNPC-219ENST00000555309 FGD5Q6ZNL6 1462 aa17.78■□□□□ 0.44
HNRNPC-219ENST00000555309 EIF4G3O43432 1585 aaKnown RBP17.78■□□□□ 0.44
HNRNPC-219ENST00000555309 SOGA1O94964 1423 aa17.78■□□□□ 0.44
HNRNPC-219ENST00000555309 TDRD9Q8NDG6 1382 aaKnown RBP17.76■□□□□ 0.43
HNRNPC-219ENST00000555309 OSCARQ8IYS5 282 aa17.76■□□□□ 0.43
HNRNPC-219ENST00000555309 FBLN2P98095 1184 aa17.65■□□□□ 0.42
HNRNPC-219ENST00000555309 TRIM41Q8WV44 630 aa17.63■□□□□ 0.41
HNRNPC-219ENST00000555309 SYNJ1O43426 1573 aa17.62■□□□□ 0.41
HNRNPC-219ENST00000555309 WRNQ14191 1432 aaPredicted RBP eCLIP17.62■□□□□ 0.41
HNRNPC-219ENST00000555309 SNAPC4Q5SXM2 1469 aa17.6■□□□□ 0.41
HNRNPC-219ENST00000555309 CHD1O14646 1710 aa17.59■□□□□ 0.41
HNRNPC-219ENST00000555309 WDR97A6NE52 1622 aa17.59■□□□□ 0.41
HNRNPC-219ENST00000555309 TOP2BQ02880 1626 aa17.57■□□□□ 0.4
HNRNPC-219ENST00000555309 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
HNRNPC-219ENST00000555309 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
HNRNPC-219ENST00000555309 GRIN2BQ13224 1484 aa17.54■□□□□ 0.4
HNRNPC-219ENST00000555309 GAPVD1Q14C86 1478 aa17.54■□□□□ 0.4
HNRNPC-219ENST00000555309 CHMP7Q8WUX9 453 aaPredicted RBP17.52■□□□□ 0.39
HNRNPC-219ENST00000555309 ABCA5Q8WWZ7 1642 aa17.5■□□□□ 0.39
HNRNPC-219ENST00000555309 RIMBP3CA6NJZ7 1639 aa17.5■□□□□ 0.39
HNRNPC-219ENST00000555309 RIMBP3BA6NNM3 1639 aa17.5■□□□□ 0.39
HNRNPC-219ENST00000555309 RIMBP3Q9UFD9 1639 aa17.5■□□□□ 0.39
HNRNPC-219ENST00000555309 PBRM1Q86U86 1689 aa17.49■□□□□ 0.39
HNRNPC-219ENST00000555309 MAGI1Q96QZ7 1491 aaPredicted RBP17.48■□□□□ 0.39
HNRNPC-219ENST00000555309 ARHGEF11O15085 1522 aa17.47■□□□□ 0.39
HNRNPC-219ENST00000555309 SYNJ2O15056 1496 aa17.45■□□□□ 0.38
HNRNPC-219ENST00000555309 CYB5RLQ6IPT4 315 aa17.4■□□□□ 0.38
HNRNPC-219ENST00000555309 CLASP1Q7Z460 1538 aa17.39■□□□□ 0.37
HNRNPC-219ENST00000555309 ADAMTS12P58397 1594 aa17.35■□□□□ 0.37
HNRNPC-219ENST00000555309 ARAP1Q96P48 1450 aa17.34■□□□□ 0.37
HNRNPC-219ENST00000555309 GRIN2AQ12879 1464 aa17.33■□□□□ 0.37
HNRNPC-219ENST00000555309 FHAD1B1AJZ9 1412 aa17.31■□□□□ 0.36
HNRNPC-219ENST00000555309 ERICH3Q5RHP9 1530 aa17.31■□□□□ 0.36
HNRNPC-219ENST00000555309 CEP170Q5SW79 1584 aa17.29■□□□□ 0.36
HNRNPC-219ENST00000555309 IGF1RP08069 1367 aa17.26■□□□□ 0.35
HNRNPC-219ENST00000555309 NUP160Q12769 1436 aa17.26■□□□□ 0.35
HNRNPC-219ENST00000555309 ERCC6L2Q5T890 1561 aa17.25■□□□□ 0.35
HNRNPC-219ENST00000555309 KIF27Q86VH2 1401 aa17.23■□□□□ 0.35
HNRNPC-219ENST00000555309 RUSC2Q8N2Y8 1516 aa17.19■□□□□ 0.34
HNRNPC-219ENST00000555309 JPH4Q96JJ6 628 aa17.14■□□□□ 0.33
HNRNPC-219ENST00000555309 CARMIL1Q5VZK9 1371 aa17.13■□□□□ 0.33
HNRNPC-219ENST00000555309 SHROOM2Q13796 1616 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms