RNA–Protein interactions for RNA: ENST00000583753.5

RNF43-207, Transcript of ring finger protein 43, humanhuman

TSL 2 BASIC

Gene RNF43, Length 3,560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-207ENST00000583753 NISCHQ9Y2I1 1504 aa19.33■□□□□ 0.68
RNF43-207ENST00000583753 SUPT5HO00267 1087 aaKnown RBP18.21■□□□□ 0.51
RNF43-207ENST00000583753 SHROOM4Q9ULL8 1493 aa18.21■□□□□ 0.51
RNF43-207ENST00000583753 DCAF8L2P0C7V8 631 aa18.02■□□□□ 0.47
RNF43-207ENST00000583753 PCGF6Q9BYE7 350 aa17.6■□□□□ 0.41
RNF43-207ENST00000583753 EHMT2Q96KQ7 1210 aa17.38■□□□□ 0.37
RNF43-207ENST00000583753 PPARGC1BQ86YN6 1023 aaKnown RBP17.33■□□□□ 0.36
RNF43-207ENST00000583753 HRCP23327 699 aa17.25■□□□□ 0.35
RNF43-207ENST00000583753 CHIC1Q5VXU3 224 aa17.11■□□□□ 0.33
RNF43-207ENST00000583753 LOC105371045A0A1W2PR82 267 aa17.09■□□□□ 0.33
RNF43-207ENST00000583753 FAM9AQ8IZU1 332 aaPredicted RBP17.06■□□□□ 0.32
RNF43-207ENST00000583753 TTBK1Q5TCY1 1321 aaPredicted RBP16.82■□□□□ 0.28
RNF43-207ENST00000583753 MYO15BQ96JP2 1530 aa16.74■□□□□ 0.27
RNF43-207ENST00000583753 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
RNF43-207ENST00000583753 TRIM41Q8WV44 630 aa16.64■□□□□ 0.25
RNF43-207ENST00000583753 CCER1Q8TC90 406 aaPredicted RBP16.48■□□□□ 0.23
RNF43-207ENST00000583753 ZEB1P37275 1124 aaPredicted RBP16.47■□□□□ 0.23
RNF43-207ENST00000583753 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.38■□□□□ 0.21
RNF43-207ENST00000583753 YTHDC1Q96MU7 727 aaKnown RBP16.36■□□□□ 0.21
RNF43-207ENST00000583753 PELP1Q8IZL8 1130 aaKnown RBP16.33■□□□□ 0.21
RNF43-207ENST00000583753 SCAF1Q9H7N4 1312 aaKnown RBP16.24■□□□□ 0.19
RNF43-207ENST00000583753 RANGAP1P46060 587 aaPredicted RBP16.24■□□□□ 0.19
RNF43-207ENST00000583753 ZCCHC6Q5VYS8 1495 aaKnown RBP16.23■□□□□ 0.19
RNF43-207ENST00000583753 CENPBP07199 599 aaPredicted RBP16.21■□□□□ 0.19
RNF43-207ENST00000583753 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
RNF43-207ENST00000583753 GTF3C3Q9Y5Q9 886 aa16.12■□□□□ 0.17
RNF43-207ENST00000583753 DIEXFQ68CQ4 756 aaKnown RBP16.1■□□□□ 0.17
RNF43-207ENST00000583753 UBTFP17480 764 aaKnown RBP16.08■□□□□ 0.16
RNF43-207ENST00000583753 NEUROD1Q13562 356 aa16.04■□□□□ 0.16
RNF43-207ENST00000583753 ACIN1Q9UKV3 1341 aaKnown RBP16■□□□□ 0.15
RNF43-207ENST00000583753 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
RNF43-207ENST00000583753 APLP2Q06481 763 aa15.92■□□□□ 0.14
RNF43-207ENST00000583753 MYT1Q01538 1121 aa15.79■□□□□ 0.12
RNF43-207ENST00000583753 CCDC180Q9P1Z9 1646 aa15.78■□□□□ 0.12
RNF43-207ENST00000583753 SCRIBQ14160 1630 aa15.71■□□□□ 0.1
RNF43-207ENST00000583753 ZNF316A6NFI3 1004 aaPredicted RBP15.7■□□□□ 0.1
RNF43-207ENST00000583753 ITGAEP38570 1179 aa15.7■□□□□ 0.1
RNF43-207ENST00000583753 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
RNF43-207ENST00000583753 MIER1Q8N108 512 aa15.62■□□□□ 0.09
RNF43-207ENST00000583753 ABCC9O60706 1549 aa15.61■□□□□ 0.09
RNF43-207ENST00000583753 BCANQ96GW7 911 aa15.57■□□□□ 0.08
RNF43-207ENST00000583753 ATP1B4Q9UN42 357 aaPredicted RBP15.54■□□□□ 0.08
RNF43-207ENST00000583753 RB1CC1Q8TDY2 1594 aa15.5■□□□□ 0.07
RNF43-207ENST00000583753 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
RNF43-207ENST00000583753 PABPN1Q86U42 306 aaKnown RBP eCLIP15.47■□□□□ 0.07
RNF43-207ENST00000583753 CECR2Q9BXF3 1484 aa15.43■□□□□ 0.06
RNF43-207ENST00000583753 CEP162Q5TB80 1403 aa15.35■□□□□ 0.05
RNF43-207ENST00000583753 NEFLP07196 543 aa15.33■□□□□ 0.04
RNF43-207ENST00000583753 SOGA1O94964 1423 aa15.27■□□□□ 0.04
RNF43-207ENST00000583753 CNGB1Q14028 1251 aaPredicted RBP15.27■□□□□ 0.04
RNF43-207ENST00000583753 ERICH6Q7L0X2 663 aa15.25■□□□□ 0.03
RNF43-207ENST00000583753 HIRIP3Q9BW71 556 aaPredicted RBP15.24■□□□□ 0.03
RNF43-207ENST00000583753 MROH2BQ7Z745 1585 aa15.23■□□□□ 0.03
RNF43-207ENST00000583753 ABCC8Q09428 1581 aa15.21■□□□□ 0.03
RNF43-207ENST00000583753 FAM50AQ14320 339 aaKnown RBP15.2■□□□□ 0.02
RNF43-207ENST00000583753 CCDC88BA6NC98 1476 aa15.2■□□□□ 0.02
RNF43-207ENST00000583753 FKBP8Q14318 412 aa15.19■□□□□ 0.02
RNF43-207ENST00000583753 DDX10Q13206 875 aaKnown RBP15.18■□□□□ 0.02
RNF43-207ENST00000583753 TRIM52Q96A61 297 aa15.14■□□□□ 0.01
RNF43-207ENST00000583753 SUPT16HQ9Y5B9 1047 aaKnown RBP15.14■□□□□ 0.01
RNF43-207ENST00000583753 P3H3Q8IVL6 736 aa15.12■□□□□ 0.01
RNF43-207ENST00000583753 TNIKQ9UKE5 1360 aa15.12■□□□□ 0.01
RNF43-207ENST00000583753 WIZO95785 1651 aa15.11■□□□□ 0.01
RNF43-207ENST00000583753 CLIP1P30622 1438 aa15.11■□□□□ 0.01
RNF43-207ENST00000583753 RUSC2Q8N2Y8 1516 aa15.1■□□□□ 0.01
RNF43-207ENST00000583753 KCNH8Q96L42 1107 aa15.08■□□□□ 0
RNF43-207ENST00000583753 IRX6P78412 446 aaPredicted RBP15.05■□□□□ -0
RNF43-207ENST00000583753 POLR3GLQ9BT43 218 aa15.04■□□□□ -0
RNF43-207ENST00000583753 GOLGA3Q08378 1498 aa15.01□□□□□ -0.01
RNF43-207ENST00000583753 ANP32CO43423 234 aa14.99□□□□□ -0.01
RNF43-207ENST00000583753 KANK4Q5T7N3 995 aaPredicted RBP14.98□□□□□ -0.01
RNF43-207ENST00000583753 SIN3AQ96ST3 1273 aa14.96□□□□□ -0.01
RNF43-207ENST00000583753 TSHZ2Q9NRE2 1034 aa14.96□□□□□ -0.01
RNF43-207ENST00000583753 WRNQ14191 1432 aaPredicted RBP eCLIP14.95□□□□□ -0.02
RNF43-207ENST00000583753 ANP32EQ9BTT0 268 aa14.94□□□□□ -0.02
RNF43-207ENST00000583753 SENP3-EIF4A1A0A087X0R7 540 aa14.9□□□□□ -0.02
RNF43-207ENST00000583753 HNRNPUQ00839 825 aaKnown RBP eCLIP14.89□□□□□ -0.032e-6■■□□□ 12.8
RNF43-207ENST00000583753 EEA1Q15075 1411 aa14.86□□□□□ -0.03
RNF43-207ENST00000583753 ARID3CA6NKF2 412 aa14.85□□□□□ -0.03
RNF43-207ENST00000583753 CDK11AQ9UQ88 783 aaPredicted RBP14.84□□□□□ -0.03
RNF43-207ENST00000583753 BAZ1AQ9NRL2 1556 aaPredicted RBP14.84□□□□□ -0.03
RNF43-207ENST00000583753 CEP164Q9UPV0 1460 aa14.83□□□□□ -0.03
RNF43-207ENST00000583753 CLSPNQ9HAW4 1339 aa14.82□□□□□ -0.04
RNF43-207ENST00000583753 VPS8Q8N3P4 1428 aa14.81□□□□□ -0.04
RNF43-207ENST00000583753 BCL11AQ9H165 835 aa14.8□□□□□ -0.04
RNF43-207ENST00000583753 FAM9BQ8IZU0 186 aa14.79□□□□□ -0.04
RNF43-207ENST00000583753 NACADO15069 1562 aa14.78□□□□□ -0.04
RNF43-207ENST00000583753 DHX57Q6P158 1386 aaKnown RBP14.78□□□□□ -0.04
RNF43-207ENST00000583753 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
RNF43-207ENST00000583753 RAPGEF2Q9Y4G8 1499 aa14.77□□□□□ -0.05
RNF43-207ENST00000583753 ZNF326Q5BKZ1 582 aaKnown RBP14.75□□□□□ -0.05
RNF43-207ENST00000583753 CHIC2Q9UKJ5 165 aa14.74□□□□□ -0.05
RNF43-207ENST00000583753 NBR1Q14596 966 aa14.73□□□□□ -0.05
RNF43-207ENST00000583753 TONSLQ96HA7 1378 aa14.73□□□□□ -0.05
RNF43-207ENST00000583753 CCNB3Q8WWL7 1395 aa14.7□□□□□ -0.06
RNF43-207ENST00000583753 TOP2AP11388 1531 aaKnown RBP14.68□□□□□ -0.06
RNF43-207ENST00000583753 RAB3GAP2Q9H2M9 1393 aa14.66□□□□□ -0.06
RNF43-207ENST00000583753 NPM2Q86SE8 214 aaKnown RBP14.64□□□□□ -0.07
RNF43-207ENST00000583753 SALL2Q9Y467 1007 aaPredicted RBP14.64□□□□□ -0.07
RNF43-207ENST00000583753 RRP7BPQ9NSQ0 103 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms