RNA–Protein interactions for RNA: ENST00000584437.5

RNF43-208, Transcript of ring finger protein 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF43, Length 5,575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-208ENST00000584437 DCAF8L2P0C7V8 631 aa21.68■■□□□ 1.06
RNF43-208ENST00000584437 PELP1Q8IZL8 1130 aaKnown RBP21.05■□□□□ 0.96
RNF43-208ENST00000584437 SUPT5HO00267 1087 aaKnown RBP21.04■□□□□ 0.96
RNF43-208ENST00000584437 NISCHQ9Y2I1 1504 aa20.57■□□□□ 0.88
RNF43-208ENST00000584437 SHROOM4Q9ULL8 1493 aa20.42■□□□□ 0.86
RNF43-208ENST00000584437 EHMT2Q96KQ7 1210 aa20.26■□□□□ 0.83
RNF43-208ENST00000584437 APLP2Q06481 763 aa20.25■□□□□ 0.83
RNF43-208ENST00000584437 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
RNF43-208ENST00000584437 MYT1Q01538 1121 aa20.19■□□□□ 0.82
RNF43-208ENST00000584437 PCGF6Q9BYE7 350 aa20.14■□□□□ 0.82
RNF43-208ENST00000584437 ZEB1P37275 1124 aaPredicted RBP20.14■□□□□ 0.81
RNF43-208ENST00000584437 ERICH6Q7L0X2 663 aa20.07■□□□□ 0.8
RNF43-208ENST00000584437 CCER1Q8TC90 406 aaPredicted RBP20.06■□□□□ 0.8
RNF43-208ENST00000584437 FAM9AQ8IZU1 332 aaPredicted RBP19.83■□□□□ 0.76
RNF43-208ENST00000584437 TTBK1Q5TCY1 1321 aaPredicted RBP19.7■□□□□ 0.74
RNF43-208ENST00000584437 NEFLP07196 543 aa19.66■□□□□ 0.74
RNF43-208ENST00000584437 TRIM41Q8WV44 630 aa19.54■□□□□ 0.72
RNF43-208ENST00000584437 YTHDC1Q96MU7 727 aaKnown RBP19.45■□□□□ 0.7
RNF43-208ENST00000584437 HRCP23327 699 aa19.35■□□□□ 0.69
RNF43-208ENST00000584437 TRIM26Q12899 539 aaPredicted RBP19.33■□□□□ 0.68
RNF43-208ENST00000584437 RANGAP1P46060 587 aaPredicted RBP19.3■□□□□ 0.68
RNF43-208ENST00000584437 UBTFP17480 764 aaKnown RBP19.29■□□□□ 0.68
RNF43-208ENST00000584437 ATP1B4Q9UN42 357 aaPredicted RBP19.19■□□□□ 0.66
RNF43-208ENST00000584437 DAXXQ9UER7 740 aaPredicted RBP19.09■□□□□ 0.65
RNF43-208ENST00000584437 PPARGC1BQ86YN6 1023 aaKnown RBP18.98■□□□□ 0.63
RNF43-208ENST00000584437 RTL5Q5HYW3 569 aaPredicted RBP18.82■□□□□ 0.6
RNF43-208ENST00000584437 DIEXFQ68CQ4 756 aaKnown RBP18.77■□□□□ 0.6
RNF43-208ENST00000584437 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.59
RNF43-208ENST00000584437 LOC105371045A0A1W2PR82 267 aa18.72■□□□□ 0.59
RNF43-208ENST00000584437 HNRNPUL2Q1KMD3 747 aaKnown RBP18.69■□□□□ 0.58
RNF43-208ENST00000584437 ITGAEP38570 1179 aa18.68■□□□□ 0.58
RNF43-208ENST00000584437 POLR3GLQ9BT43 218 aa18.66■□□□□ 0.58
RNF43-208ENST00000584437 ZNF316A6NFI3 1004 aaPredicted RBP18.63■□□□□ 0.57
RNF43-208ENST00000584437 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.57■□□□□ 0.56
RNF43-208ENST00000584437 GTF3C3Q9Y5Q9 886 aa18.54■□□□□ 0.56
RNF43-208ENST00000584437 CLSPNQ9HAW4 1339 aa18.5■□□□□ 0.55
RNF43-208ENST00000584437 CNGB1Q14028 1251 aaPredicted RBP18.42■□□□□ 0.54
RNF43-208ENST00000584437 CDK11AQ9UQ88 783 aaPredicted RBP18.41■□□□□ 0.54
RNF43-208ENST00000584437 MYT1LQ9UL68 1186 aa18.34■□□□□ 0.53
RNF43-208ENST00000584437 BCANQ96GW7 911 aa18.33■□□□□ 0.53
RNF43-208ENST00000584437 ACIN1Q9UKV3 1341 aaKnown RBP18.32■□□□□ 0.52
RNF43-208ENST00000584437 ANP32CO43423 234 aa18.31■□□□□ 0.52
RNF43-208ENST00000584437 FAM50AQ14320 339 aaKnown RBP18.22■□□□□ 0.51
RNF43-208ENST00000584437 SLC4A1APQ9BWU0 796 aaKnown RBP18.2■□□□□ 0.5
RNF43-208ENST00000584437 NEUROD1Q13562 356 aa18.17■□□□□ 0.5
RNF43-208ENST00000584437 TRIM52Q96A61 297 aa18.15■□□□□ 0.5
RNF43-208ENST00000584437 ANP32AP39687 249 aaKnown RBP18.14■□□□□ 0.49
RNF43-208ENST00000584437 ZBTB47Q9UFB7 747 aaPredicted RBP18.08■□□□□ 0.48
RNF43-208ENST00000584437 CANXP27824 592 aaKnown RBP17.95■□□□□ 0.46
RNF43-208ENST00000584437 ZNF326Q5BKZ1 582 aaKnown RBP17.92■□□□□ 0.46
RNF43-208ENST00000584437 EIF5BO60841 1220 aaKnown RBP17.9■□□□□ 0.46
RNF43-208ENST00000584437 GLIPR1L2Q4G1C9 344 aa17.89■□□□□ 0.45
RNF43-208ENST00000584437 FKBP8Q14318 412 aa17.88■□□□□ 0.45
RNF43-208ENST00000584437 ANP32BQ92688 251 aaKnown RBP17.86■□□□□ 0.45
RNF43-208ENST00000584437 NPM2Q86SE8 214 aaKnown RBP17.85■□□□□ 0.45
RNF43-208ENST00000584437 NEFMP07197 916 aa17.8■□□□□ 0.44
RNF43-208ENST00000584437 DCAF1Q9Y4B6 1507 aa17.79■□□□□ 0.44
RNF43-208ENST00000584437 CSRNP3Q8WYN3 585 aa17.74■□□□□ 0.43
RNF43-208ENST00000584437 UPF2Q9HAU5 1272 aaKnown RBP17.74■□□□□ 0.43
RNF43-208ENST00000584437 HNRNPUQ00839 825 aaKnown RBP eCLIP17.72■□□□□ 0.432e-6■■□□□ 12.8
RNF43-208ENST00000584437 HSP90AA1P07900 732 aaKnown RBP17.68■□□□□ 0.42
RNF43-208ENST00000584437 TONSLQ96HA7 1378 aa17.67■□□□□ 0.42
RNF43-208ENST00000584437 SCAF1Q9H7N4 1312 aaKnown RBP17.67■□□□□ 0.42
RNF43-208ENST00000584437 BCL11AQ9H165 835 aa17.64■□□□□ 0.41
RNF43-208ENST00000584437 CCDC136Q96JN2 1154 aa17.63■□□□□ 0.41
RNF43-208ENST00000584437 DDX10Q13206 875 aaKnown RBP17.61■□□□□ 0.41
RNF43-208ENST00000584437 NBR1Q14596 966 aa17.6■□□□□ 0.41
RNF43-208ENST00000584437 FAM9BQ8IZU0 186 aa17.57■□□□□ 0.4
RNF43-208ENST00000584437 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.56■□□□□ 0.4
RNF43-208ENST00000584437 SLC24A1O60721 1099 aa17.56■□□□□ 0.4
RNF43-208ENST00000584437 P3H3Q8IVL6 736 aa17.49■□□□□ 0.39
RNF43-208ENST00000584437 TMC1Q8TDI8 760 aa17.48■□□□□ 0.39
RNF43-208ENST00000584437 MIER1Q8N108 512 aa17.47■□□□□ 0.39
RNF43-208ENST00000584437 PABPN1Q86U42 306 aaKnown RBP eCLIP17.45■□□□□ 0.38
RNF43-208ENST00000584437 ANP32EQ9BTT0 268 aa17.45■□□□□ 0.38
RNF43-208ENST00000584437 DDRGK1Q96HY6 314 aa17.44■□□□□ 0.38
RNF43-208ENST00000584437 MRS2Q9HD23 443 aa17.43■□□□□ 0.38
RNF43-208ENST00000584437 ZNF777Q9ULD5 760 aaPredicted RBP17.41■□□□□ 0.38
RNF43-208ENST00000584437 FBLN2P98095 1184 aa17.37■□□□□ 0.37
RNF43-208ENST00000584437 SALL2Q9Y467 1007 aaPredicted RBP17.37■□□□□ 0.37
RNF43-208ENST00000584437 WDR43Q15061 677 aaKnown RBP eCLIP17.36■□□□□ 0.37
RNF43-208ENST00000584437 BECN1Q14457 450 aa17.36■□□□□ 0.37
RNF43-208ENST00000584437 ABCC9O60706 1549 aa17.35■□□□□ 0.37
RNF43-208ENST00000584437 ARXQ96QS3 562 aa17.35■□□□□ 0.37
RNF43-208ENST00000584437 ARID3CA6NKF2 412 aa17.34■□□□□ 0.37
RNF43-208ENST00000584437 TRIM44Q96DX7 344 aaPredicted RBP17.32■□□□□ 0.36
RNF43-208ENST00000584437 IRX6P78412 446 aaPredicted RBP17.31■□□□□ 0.36
RNF43-208ENST00000584437 PPM1GO15355 546 aaPredicted RBP17.29■□□□□ 0.36
RNF43-208ENST00000584437 ERICH6BQ5W0A0 696 aa17.27■□□□□ 0.35
RNF43-208ENST00000584437 EIF4G2P78344 907 aaKnown RBP eCLIP17.26■□□□□ 0.35
RNF43-208ENST00000584437 GOLGA6L22H0YM25 854 aa17.25■□□□□ 0.35
RNF43-208ENST00000584437 TNNT2P45379 298 aaPredicted RBP17.24■□□□□ 0.35
RNF43-208ENST00000584437 MYH16Q9H6N6 1097 aa17.23■□□□□ 0.35
RNF43-208ENST00000584437 NCLP19338 710 aaKnown RBP17.21■□□□□ 0.35
RNF43-208ENST00000584437 CHGAP10645 457 aaKnown RBP17.19■□□□□ 0.34
RNF43-208ENST00000584437 CHIC2Q9UKJ5 165 aa17.17■□□□□ 0.34
RNF43-208ENST00000584437 CCDC180Q9P1Z9 1646 aa17.15■□□□□ 0.34
RNF43-208ENST00000584437 PPP4R2Q9NY27 417 aa17.15■□□□□ 0.34
RNF43-208ENST00000584437 CLIP1P30622 1438 aa17.14■□□□□ 0.33
RNF43-208ENST00000584437 STAG3Q9UJ98 1225 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms