RNA–Protein interactions for RNA: ENST00000398411.5

CST3-203, Transcript of cystatin C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CST3, Length 3,286 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CST3-203ENST00000398411 NISCHQ9Y2I1 1504 aa24.84■■□□□ 1.57
CST3-203ENST00000398411 SHROOM4Q9ULL8 1493 aa22.28■■□□□ 1.16
CST3-203ENST00000398411 SUPT5HO00267 1087 aaKnown RBP22.18■■□□□ 1.14
CST3-203ENST00000398411 PPARGC1BQ86YN6 1023 aaKnown RBP21.68■■□□□ 1.06
CST3-203ENST00000398411 PCGF6Q9BYE7 350 aa21.64■■□□□ 1.06
CST3-203ENST00000398411 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
CST3-203ENST00000398411 DCAF8L2P0C7V8 631 aa21.58■■□□□ 1.05
CST3-203ENST00000398411 HRCP23327 699 aa21.52■■□□□ 1.04
CST3-203ENST00000398411 EHMT2Q96KQ7 1210 aa21.12■□□□□ 0.97
CST3-203ENST00000398411 CHIC1Q5VXU3 224 aa21.09■□□□□ 0.97
CST3-203ENST00000398411 LOC105371045A0A1W2PR82 267 aa21.07■□□□□ 0.96
CST3-203ENST00000398411 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
CST3-203ENST00000398411 ZCCHC6Q5VYS8 1495 aaKnown RBP20.99■□□□□ 0.95
CST3-203ENST00000398411 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
CST3-203ENST00000398411 DCAF1Q9Y4B6 1507 aa20.64■□□□□ 0.9
CST3-203ENST00000398411 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
CST3-203ENST00000398411 TRIM26Q12899 539 aaPredicted RBP20.47■□□□□ 0.87
CST3-203ENST00000398411 TTBK1Q5TCY1 1321 aaPredicted RBP20.46■□□□□ 0.87
CST3-203ENST00000398411 PELP1Q8IZL8 1130 aaKnown RBP20.32■□□□□ 0.84
CST3-203ENST00000398411 TRIM41Q8WV44 630 aa20.2■□□□□ 0.82
CST3-203ENST00000398411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.82
CST3-203ENST00000398411 NEUROD1Q13562 356 aa20.07■□□□□ 0.8
CST3-203ENST00000398411 CCER1Q8TC90 406 aaPredicted RBP20.05■□□□□ 0.8
CST3-203ENST00000398411 ZEB1P37275 1124 aaPredicted RBP20.03■□□□□ 0.8
CST3-203ENST00000398411 YTHDC1Q96MU7 727 aaKnown RBP20.02■□□□□ 0.8
CST3-203ENST00000398411 GTF3C3Q9Y5Q9 886 aa20.01■□□□□ 0.79
CST3-203ENST00000398411 NACADO15069 1562 aa19.96■□□□□ 0.79
CST3-203ENST00000398411 ACIN1Q9UKV3 1341 aaKnown RBP19.91■□□□□ 0.78
CST3-203ENST00000398411 ABCC9O60706 1549 aa19.85■□□□□ 0.77
CST3-203ENST00000398411 SCRIBQ14160 1630 aa19.78■□□□□ 0.76
CST3-203ENST00000398411 DIEXFQ68CQ4 756 aaKnown RBP19.76■□□□□ 0.75
CST3-203ENST00000398411 CENPBP07199 599 aaPredicted RBP19.7■□□□□ 0.74
CST3-203ENST00000398411 RB1CC1Q8TDY2 1594 aa19.68■□□□□ 0.74
CST3-203ENST00000398411 RANGAP1P46060 587 aaPredicted RBP19.61■□□□□ 0.73
CST3-203ENST00000398411 HNRNPUL2Q1KMD3 747 aaKnown RBP19.46■□□□□ 0.71
CST3-203ENST00000398411 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
CST3-203ENST00000398411 UNC13AQ9UPW8 1703 aa19.37■□□□□ 0.69
CST3-203ENST00000398411 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
CST3-203ENST00000398411 MYT1Q01538 1121 aa19.33■□□□□ 0.68
CST3-203ENST00000398411 MIER1Q8N108 512 aa19.33■□□□□ 0.68
CST3-203ENST00000398411 ZNF316A6NFI3 1004 aaPredicted RBP19.24■□□□□ 0.67
CST3-203ENST00000398411 CECR2Q9BXF3 1484 aa19.2■□□□□ 0.66
CST3-203ENST00000398411 MROH2BQ7Z745 1585 aa19.18■□□□□ 0.66
CST3-203ENST00000398411 BAZ1AQ9NRL2 1556 aaPredicted RBP19.17■□□□□ 0.66
CST3-203ENST00000398411 BICRAQ9NZM4 1560 aa19.1■□□□□ 0.65
CST3-203ENST00000398411 BCANQ96GW7 911 aa19.08■□□□□ 0.65
CST3-203ENST00000398411 WIZO95785 1651 aa19.06■□□□□ 0.64
CST3-203ENST00000398411 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
CST3-203ENST00000398411 APLP2Q06481 763 aa19.03■□□□□ 0.64
CST3-203ENST00000398411 ITGAEP38570 1179 aa19.01■□□□□ 0.63
CST3-203ENST00000398411 TOP2AP11388 1531 aaKnown RBP18.92■□□□□ 0.62
CST3-203ENST00000398411 CEP162Q5TB80 1403 aa18.9■□□□□ 0.62
CST3-203ENST00000398411 SOGA1O94964 1423 aa18.86■□□□□ 0.61
CST3-203ENST00000398411 PEG3Q9GZU2 1588 aa18.86■□□□□ 0.61
CST3-203ENST00000398411 SUPT16HQ9Y5B9 1047 aaKnown RBP18.86■□□□□ 0.61
CST3-203ENST00000398411 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
CST3-203ENST00000398411 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
CST3-203ENST00000398411 EIF4G1Q04637 1599 aaKnown RBP18.84■□□□□ 0.61
CST3-203ENST00000398411 CCDC88BA6NC98 1476 aa18.82■□□□□ 0.6
CST3-203ENST00000398411 BCL11AQ9H165 835 aa18.78■□□□□ 0.6
CST3-203ENST00000398411 KCNH8Q96L42 1107 aa18.77■□□□□ 0.6
CST3-203ENST00000398411 TSHZ2Q9NRE2 1034 aa18.77■□□□□ 0.6
CST3-203ENST00000398411 SMARCA2P51531 1590 aa18.75■□□□□ 0.59
CST3-203ENST00000398411 RUSC2Q8N2Y8 1516 aa18.75■□□□□ 0.59
CST3-203ENST00000398411 HIRIP3Q9BW71 556 aaPredicted RBP18.7■□□□□ 0.58
CST3-203ENST00000398411 PABPN1Q86U42 306 aaKnown RBP eCLIP18.7■□□□□ 0.58
CST3-203ENST00000398411 ANP32EQ9BTT0 268 aa18.69■□□□□ 0.58
CST3-203ENST00000398411 FKBP8Q14318 412 aa18.62■□□□□ 0.57
CST3-203ENST00000398411 ATP1B4Q9UN42 357 aaPredicted RBP18.61■□□□□ 0.57
CST3-203ENST00000398411 ATAD2BQ9ULI0 1458 aa18.58■□□□□ 0.56
CST3-203ENST00000398411 TRIM52Q96A61 297 aa18.58■□□□□ 0.56
CST3-203ENST00000398411 TNIKQ9UKE5 1360 aa18.56■□□□□ 0.56
CST3-203ENST00000398411 DDX10Q13206 875 aaKnown RBP18.55■□□□□ 0.56
CST3-203ENST00000398411 CLIP1P30622 1438 aa18.49■□□□□ 0.55
CST3-203ENST00000398411 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
CST3-203ENST00000398411 IRX6P78412 446 aaPredicted RBP18.48■□□□□ 0.55
CST3-203ENST00000398411 NEFLP07196 543 aa18.47■□□□□ 0.55
CST3-203ENST00000398411 CNGB1Q14028 1251 aaPredicted RBP18.47■□□□□ 0.55
CST3-203ENST00000398411 WRNQ14191 1432 aaPredicted RBP eCLIP18.46■□□□□ 0.55
CST3-203ENST00000398411 HMGXB3Q12766 1538 aa18.46■□□□□ 0.54
CST3-203ENST00000398411 KANK4Q5T7N3 995 aaPredicted RBP18.44■□□□□ 0.54
CST3-203ENST00000398411 GOLGA3Q08378 1498 aa18.39■□□□□ 0.54
CST3-203ENST00000398411 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
CST3-203ENST00000398411 RBM19Q9Y4C8 960 aaKnown RBP18.38■□□□□ 0.53
CST3-203ENST00000398411 FAM50AQ14320 339 aaKnown RBP18.37■□□□□ 0.53
CST3-203ENST00000398411 SIN3AQ96ST3 1273 aa18.36■□□□□ 0.53
CST3-203ENST00000398411 ERICH6Q7L0X2 663 aa18.35■□□□□ 0.53
CST3-203ENST00000398411 P3H3Q8IVL6 736 aa18.32■□□□□ 0.52
CST3-203ENST00000398411 SENP3-EIF4A1A0A087X0R7 540 aa18.29■□□□□ 0.52
CST3-203ENST00000398411 DHX57Q6P158 1386 aaKnown RBP18.28■□□□□ 0.52
CST3-203ENST00000398411 RAPGEF2Q9Y4G8 1499 aa18.24■□□□□ 0.51
CST3-203ENST00000398411 EEA1Q15075 1411 aa18.22■□□□□ 0.51
CST3-203ENST00000398411 VPS8Q8N3P4 1428 aa18.22■□□□□ 0.51
CST3-203ENST00000398411 MSH5O43196 834 aa18.22■□□□□ 0.51
CST3-203ENST00000398411 SYNJ1O43426 1573 aa18.18■□□□□ 0.5
CST3-203ENST00000398411 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
CST3-203ENST00000398411 PRDM2Q13029 1718 aa18.17■□□□□ 0.5
CST3-203ENST00000398411 ANP32CO43423 234 aa18.17■□□□□ 0.5
CST3-203ENST00000398411 HNRNPUQ00839 825 aaKnown RBP eCLIP18.15■□□□□ 0.5
CST3-203ENST00000398411 CLSPNQ9HAW4 1339 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms