RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 DCAF8L2P0C7V8 631 aa23.19■■□□□ 1.3
NPHP3-ACAD11-201ENST00000471702 EHMT2Q96KQ7 1210 aa21.74■■□□□ 1.07
NPHP3-ACAD11-201ENST00000471702 SUPT5HO00267 1087 aaKnown RBP21.51■■□□□ 1.03
NPHP3-ACAD11-201ENST00000471702 PELP1Q8IZL8 1130 aaKnown RBP21.32■■□□□ 1
NPHP3-ACAD11-201ENST00000471702 SHROOM4Q9ULL8 1493 aa20.96■□□□□ 0.95
NPHP3-ACAD11-201ENST00000471702 TTBK1Q5TCY1 1321 aaPredicted RBP20.93■□□□□ 0.94
NPHP3-ACAD11-201ENST00000471702 APLP2Q06481 763 aa20.84■□□□□ 0.93
NPHP3-ACAD11-201ENST00000471702 RANGAP1P46060 587 aaPredicted RBP20.67■□□□□ 0.9
NPHP3-ACAD11-201ENST00000471702 ERICH6Q7L0X2 663 aa20.67■□□□□ 0.9
NPHP3-ACAD11-201ENST00000471702 FAM9AQ8IZU1 332 aaPredicted RBP20.62■□□□□ 0.89
NPHP3-ACAD11-201ENST00000471702 ATP1B4Q9UN42 357 aaPredicted RBP20.54■□□□□ 0.88
NPHP3-ACAD11-201ENST00000471702 PCGF6Q9BYE7 350 aa20.37■□□□□ 0.85
NPHP3-ACAD11-201ENST00000471702 MYT1Q01538 1121 aa20.36■□□□□ 0.85
NPHP3-ACAD11-201ENST00000471702 CCER1Q8TC90 406 aaPredicted RBP20.32■□□□□ 0.84
NPHP3-ACAD11-201ENST00000471702 MYT1LQ9UL68 1186 aa19.98■□□□□ 0.79
NPHP3-ACAD11-201ENST00000471702 YTHDC1Q96MU7 727 aaKnown RBP19.96■□□□□ 0.79
NPHP3-ACAD11-201ENST00000471702 CHIC1Q5VXU3 224 aa19.95■□□□□ 0.78
NPHP3-ACAD11-201ENST00000471702 CENPBP07199 599 aaPredicted RBP19.92■□□□□ 0.78
NPHP3-ACAD11-201ENST00000471702 NEFLP07196 543 aa19.87■□□□□ 0.77
NPHP3-ACAD11-201ENST00000471702 POLR3GLQ9BT43 218 aa19.84■□□□□ 0.77
NPHP3-ACAD11-201ENST00000471702 CNGB1Q14028 1251 aaPredicted RBP19.84■□□□□ 0.77
NPHP3-ACAD11-201ENST00000471702 UBTFP17480 764 aaKnown RBP19.82■□□□□ 0.76
NPHP3-ACAD11-201ENST00000471702 DAXXQ9UER7 740 aaPredicted RBP19.73■□□□□ 0.75
NPHP3-ACAD11-201ENST00000471702 PPARGC1BQ86YN6 1023 aaKnown RBP19.73■□□□□ 0.75
NPHP3-ACAD11-201ENST00000471702 SLC4A1APQ9BWU0 796 aaKnown RBP19.66■□□□□ 0.74
NPHP3-ACAD11-201ENST00000471702 TRIM41Q8WV44 630 aa19.65■□□□□ 0.74
NPHP3-ACAD11-201ENST00000471702 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.64■□□□□ 0.73
NPHP3-ACAD11-201ENST00000471702 HNRNPUL2Q1KMD3 747 aaKnown RBP19.64■□□□□ 0.73
NPHP3-ACAD11-201ENST00000471702 ITGAEP38570 1179 aa19.57■□□□□ 0.72
NPHP3-ACAD11-201ENST00000471702 NISCHQ9Y2I1 1504 aa19.43■□□□□ 0.7
NPHP3-ACAD11-201ENST00000471702 ZEB1P37275 1124 aaPredicted RBP19.4■□□□□ 0.7
NPHP3-ACAD11-201ENST00000471702 CLSPNQ9HAW4 1339 aa19.28■□□□□ 0.68
NPHP3-ACAD11-201ENST00000471702 BCL11AQ9H165 835 aa19.24■□□□□ 0.67
NPHP3-ACAD11-201ENST00000471702 SLC24A1O60721 1099 aa19.19■□□□□ 0.66
NPHP3-ACAD11-201ENST00000471702 ZNF316A6NFI3 1004 aaPredicted RBP19.15■□□□□ 0.66
NPHP3-ACAD11-201ENST00000471702 RTL5Q5HYW3 569 aaPredicted RBP18.92■□□□□ 0.62
NPHP3-ACAD11-201ENST00000471702 BCANQ96GW7 911 aa18.88■□□□□ 0.61
NPHP3-ACAD11-201ENST00000471702 ZBTB47Q9UFB7 747 aaPredicted RBP18.83■□□□□ 0.61
NPHP3-ACAD11-201ENST00000471702 ZNF326Q5BKZ1 582 aaKnown RBP18.79■□□□□ 0.6
NPHP3-ACAD11-201ENST00000471702 FAM50AQ14320 339 aaKnown RBP18.78■□□□□ 0.6
NPHP3-ACAD11-201ENST00000471702 TRIM52Q96A61 297 aa18.78■□□□□ 0.6
NPHP3-ACAD11-201ENST00000471702 PLPPR3Q6T4P5 718 aa18.77■□□□□ 0.59
NPHP3-ACAD11-201ENST00000471702 TRIM26Q12899 539 aaPredicted RBP18.74■□□□□ 0.59
NPHP3-ACAD11-201ENST00000471702 NEUROD1Q13562 356 aa18.72■□□□□ 0.59
NPHP3-ACAD11-201ENST00000471702 HRCP23327 699 aa18.7■□□□□ 0.58
NPHP3-ACAD11-201ENST00000471702 LOC105371045A0A1W2PR82 267 aa18.7■□□□□ 0.58
NPHP3-ACAD11-201ENST00000471702 FBLN2P98095 1184 aa18.67■□□□□ 0.58
NPHP3-ACAD11-201ENST00000471702 CANXP27824 592 aaKnown RBP18.62■□□□□ 0.57
NPHP3-ACAD11-201ENST00000471702 NEFMP07197 916 aa18.5■□□□□ 0.55
NPHP3-ACAD11-201ENST00000471702 ARID3CA6NKF2 412 aa18.49■□□□□ 0.55
NPHP3-ACAD11-201ENST00000471702 DIEXFQ68CQ4 756 aaKnown RBP18.47■□□□□ 0.55
NPHP3-ACAD11-201ENST00000471702 CDK11BP21127 795 aaKnown RBP18.46■□□□□ 0.55
NPHP3-ACAD11-201ENST00000471702 CDK11AQ9UQ88 783 aaPredicted RBP18.46■□□□□ 0.55
NPHP3-ACAD11-201ENST00000471702 A0A0G2JS52 829 aa18.41■□□□□ 0.54
NPHP3-ACAD11-201ENST00000471702 NPM2Q86SE8 214 aaKnown RBP18.35■□□□□ 0.53
NPHP3-ACAD11-201ENST00000471702 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
NPHP3-ACAD11-201ENST00000471702 ANP32CO43423 234 aa18.33■□□□□ 0.53
NPHP3-ACAD11-201ENST00000471702 PLEKHG5O94827 1062 aa18.33■□□□□ 0.52
NPHP3-ACAD11-201ENST00000471702 ESF1Q9H501 851 aaKnown RBP18.33■□□□□ 0.52
NPHP3-ACAD11-201ENST00000471702 HSP90AA1P07900 732 aaKnown RBP18.28■□□□□ 0.52
NPHP3-ACAD11-201ENST00000471702 CHGAP10645 457 aaKnown RBP18.27■□□□□ 0.52
NPHP3-ACAD11-201ENST00000471702 NCBP3Q53F19 620 aaKnown RBP18.27■□□□□ 0.52
NPHP3-ACAD11-201ENST00000471702 STAG3Q9UJ98 1225 aa18.27■□□□□ 0.52
NPHP3-ACAD11-201ENST00000471702 PABPN1Q86U42 306 aaKnown RBP eCLIP18.25■□□□□ 0.511e-8■■□□□ 13.5
NPHP3-ACAD11-201ENST00000471702 ZNF777Q9ULD5 760 aaPredicted RBP18.25■□□□□ 0.51
NPHP3-ACAD11-201ENST00000471702 P3H3Q8IVL6 736 aa18.23■□□□□ 0.51
NPHP3-ACAD11-201ENST00000471702 EIF5BO60841 1220 aaKnown RBP18.22■□□□□ 0.51
NPHP3-ACAD11-201ENST00000471702 TULP1O00294 542 aaPredicted RBP18.21■□□□□ 0.51
NPHP3-ACAD11-201ENST00000471702 SENP3Q9H4L4 574 aaPredicted RBP18.2■□□□□ 0.5
NPHP3-ACAD11-201ENST00000471702 ARXQ96QS3 562 aa18.18■□□□□ 0.5
NPHP3-ACAD11-201ENST00000471702 SALL2Q9Y467 1007 aaPredicted RBP18.18■□□□□ 0.5
NPHP3-ACAD11-201ENST00000471702 ANP32BQ92688 251 aaKnown RBP18.17■□□□□ 0.5
NPHP3-ACAD11-201ENST00000471702 GTF3C3Q9Y5Q9 886 aa18.13■□□□□ 0.49
NPHP3-ACAD11-201ENST00000471702 ANP32AP39687 249 aaKnown RBP18.1■□□□□ 0.49
NPHP3-ACAD11-201ENST00000471702 ZBTB7CA1YPR0 619 aa18.07■□□□□ 0.48
NPHP3-ACAD11-201ENST00000471702 C14orf37Q86TY3 774 aa17.95■□□□□ 0.46
NPHP3-ACAD11-201ENST00000471702 UPF2Q9HAU5 1272 aaKnown RBP17.94■□□□□ 0.46
NPHP3-ACAD11-201ENST00000471702 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.93■□□□□ 0.469e-7■■□□□ 11.8
NPHP3-ACAD11-201ENST00000471702 FAM9BQ8IZU0 186 aa17.89■□□□□ 0.46
NPHP3-ACAD11-201ENST00000471702 NBR1Q14596 966 aa17.86■□□□□ 0.45
NPHP3-ACAD11-201ENST00000471702 NPM1P06748 294 aaKnown RBP eCLIP17.86■□□□□ 0.45
NPHP3-ACAD11-201ENST00000471702 TPRNQ4KMQ1 711 aa17.84■□□□□ 0.45
NPHP3-ACAD11-201ENST00000471702 TAOK2Q9UL54 1235 aa17.83■□□□□ 0.45
NPHP3-ACAD11-201ENST00000471702 ABCC9O60706 1549 aa17.82■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 GLIPR1L2Q4G1C9 344 aa17.81■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 FKBP8Q14318 412 aa17.8■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 HAP1P54257 671 aaPredicted RBP17.79■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 HNRNPUQ00839 825 aaKnown RBP eCLIP17.78■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 KDM2AQ9Y2K7 1162 aa17.78■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 PRM3Q9NNZ6 103 aa17.78■□□□□ 0.44
NPHP3-ACAD11-201ENST00000471702 TMC1Q8TDI8 760 aa17.72■□□□□ 0.43
NPHP3-ACAD11-201ENST00000471702 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.7■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 CHIC2Q9UKJ5 165 aa17.7■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 NPHP1O15259 732 aa17.69■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 WDR43Q15061 677 aaKnown RBP eCLIP17.69■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 KRI1Q8N9T8 703 aaKnown RBP17.68■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 SENP3-EIF4A1A0A087X0R7 540 aa17.67■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 DDX10Q13206 875 aaKnown RBP17.67■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 MYH16Q9H6N6 1097 aa17.66■□□□□ 0.42
NPHP3-ACAD11-201ENST00000471702 CCDC136Q96JN2 1154 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms