RNA–Protein interactions for RNA: ENST00000454704.5

GTF3C2-206, Transcript of general transcription factor IIIC subunit 2, humanhuman

TSL 1 (best)

Gene GTF3C2, Length 1,440 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C2-206ENST00000454704 NISCHQ9Y2I1 1504 aa23.38■■□□□ 1.33
GTF3C2-206ENST00000454704 ABCC9O60706 1549 aa21.19■□□□□ 0.98
GTF3C2-206ENST00000454704 CCDC180Q9P1Z9 1646 aa21.05■□□□□ 0.96
GTF3C2-206ENST00000454704 RB1CC1Q8TDY2 1594 aa20.09■□□□□ 0.81
GTF3C2-206ENST00000454704 DNAJC5BQ9UF47 199 aa19.95■□□□□ 0.78
GTF3C2-206ENST00000454704 NACADO15069 1562 aa19.91■□□□□ 0.78
GTF3C2-206ENST00000454704 DCAF8L2P0C7V8 631 aa19.76■□□□□ 0.75
GTF3C2-206ENST00000454704 PABPN1Q86U42 306 aaKnown RBP eCLIP19.68■□□□□ 0.74
GTF3C2-206ENST00000454704 UNC13AQ9UPW8 1703 aa19.67■□□□□ 0.74
GTF3C2-206ENST00000454704 MYO15BQ96JP2 1530 aa19.57■□□□□ 0.72
GTF3C2-206ENST00000454704 BICRAQ9NZM4 1560 aa19.52■□□□□ 0.72
GTF3C2-206ENST00000454704 ZCCHC6Q5VYS8 1495 aaKnown RBP19.37■□□□□ 0.69
GTF3C2-206ENST00000454704 DCAF1Q9Y4B6 1507 aa19.29■□□□□ 0.68
GTF3C2-206ENST00000454704 SHROOM4Q9ULL8 1493 aa19.22■□□□□ 0.67
GTF3C2-206ENST00000454704 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
GTF3C2-206ENST00000454704 CC2D2AQ9P2K1 1620 aa19.13■□□□□ 0.65
GTF3C2-206ENST00000454704 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
GTF3C2-206ENST00000454704 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
GTF3C2-206ENST00000454704 DNAJC5Q9H3Z4 198 aa18.39■□□□□ 0.53
GTF3C2-206ENST00000454704 NCAPD3P42695 1498 aa18.37■□□□□ 0.53
GTF3C2-206ENST00000454704 ATAD2BQ9ULI0 1458 aa18.31■□□□□ 0.52
GTF3C2-206ENST00000454704 ERCC6Q03468 1493 aa18.3■□□□□ 0.52
GTF3C2-206ENST00000454704 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
GTF3C2-206ENST00000454704 CUX2O14529 1486 aa18.28■□□□□ 0.52
GTF3C2-206ENST00000454704 SMARCA2P51531 1590 aa18.26■□□□□ 0.51
GTF3C2-206ENST00000454704 HMGXB3Q12766 1538 aa18.25■□□□□ 0.51
GTF3C2-206ENST00000454704 NESP48681 1621 aa18.17■□□□□ 0.5
GTF3C2-206ENST00000454704 BAZ1AQ9NRL2 1556 aaPredicted RBP18.16■□□□□ 0.5
GTF3C2-206ENST00000454704 BAZ1BQ9UIG0 1483 aaKnown RBP18.14■□□□□ 0.5
GTF3C2-206ENST00000454704 PEG3Q9GZU2 1588 aa18.09■□□□□ 0.49
GTF3C2-206ENST00000454704 MROH2BQ7Z745 1585 aa18.03■□□□□ 0.48
GTF3C2-206ENST00000454704 THOC2Q8NI27 1593 aaKnown RBP18.02■□□□□ 0.48
GTF3C2-206ENST00000454704 LAMC3Q9Y6N6 1575 aa17.99■□□□□ 0.47
GTF3C2-206ENST00000454704 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
GTF3C2-206ENST00000454704 KIF21AQ7Z4S6 1674 aa17.95■□□□□ 0.46
GTF3C2-206ENST00000454704 PDS5BQ9NTI5 1447 aa17.88■□□□□ 0.45
GTF3C2-206ENST00000454704 WIZO95785 1651 aa17.82■□□□□ 0.44
GTF3C2-206ENST00000454704 CADPSQ9ULU8 1353 aa17.8■□□□□ 0.44
GTF3C2-206ENST00000454704 MRC2Q9UBG0 1479 aa17.77■□□□□ 0.43
GTF3C2-206ENST00000454704 WDR62O43379 1518 aa17.74■□□□□ 0.43
GTF3C2-206ENST00000454704 CEP164Q9UPV0 1460 aa17.66■□□□□ 0.42
GTF3C2-206ENST00000454704 CHIC1Q5VXU3 224 aa17.64■□□□□ 0.42
GTF3C2-206ENST00000454704 FANCD2Q9BXW9 1451 aa17.63■□□□□ 0.41
GTF3C2-206ENST00000454704 RSF1Q96T23 1441 aaPredicted RBP17.6■□□□□ 0.41
GTF3C2-206ENST00000454704 CFTRP13569 1480 aa17.59■□□□□ 0.41
GTF3C2-206ENST00000454704 TOP2AP11388 1531 aaKnown RBP17.58■□□□□ 0.4
GTF3C2-206ENST00000454704 TRIM41Q8WV44 630 aa17.57■□□□□ 0.4
GTF3C2-206ENST00000454704 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
GTF3C2-206ENST00000454704 PRDM2Q13029 1718 aa17.45■□□□□ 0.38
GTF3C2-206ENST00000454704 OSCARQ8IYS5 282 aa17.39■□□□□ 0.38
GTF3C2-206ENST00000454704 CCDC88BA6NC98 1476 aa17.36■□□□□ 0.37
GTF3C2-206ENST00000454704 ZNF608Q9ULD9 1512 aaPredicted RBP17.32■□□□□ 0.36
GTF3C2-206ENST00000454704 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
GTF3C2-206ENST00000454704 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
GTF3C2-206ENST00000454704 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
GTF3C2-206ENST00000454704 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
GTF3C2-206ENST00000454704 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
GTF3C2-206ENST00000454704 EIF4G3O43432 1585 aaKnown RBP17.23■□□□□ 0.35
GTF3C2-206ENST00000454704 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
GTF3C2-206ENST00000454704 ABCC8Q09428 1581 aa17.2■□□□□ 0.34
GTF3C2-206ENST00000454704 ARHGEF11O15085 1522 aa17.18■□□□□ 0.34
GTF3C2-206ENST00000454704 TARBP1Q13395 1621 aaKnown RBP17.15■□□□□ 0.34
GTF3C2-206ENST00000454704 CHD1O14646 1710 aa17.13■□□□□ 0.33
GTF3C2-206ENST00000454704 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.334e-7■■■■■ 35.3
GTF3C2-206ENST00000454704 POLA1P09884 1462 aaPredicted RBP17.11■□□□□ 0.33
GTF3C2-206ENST00000454704 HRCP23327 699 aa17.11■□□□□ 0.33
GTF3C2-206ENST00000454704 RAD54L2Q9Y4B4 1467 aa17.05■□□□□ 0.32
GTF3C2-206ENST00000454704 FBLN2P98095 1184 aa17.03■□□□□ 0.32
GTF3C2-206ENST00000454704 CYB5RLQ6IPT4 315 aa17.02■□□□□ 0.31
GTF3C2-206ENST00000454704 ARAP1Q96P48 1450 aa17■□□□□ 0.31
GTF3C2-206ENST00000454704 SOGA1O94964 1423 aa17■□□□□ 0.31
GTF3C2-206ENST00000454704 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
GTF3C2-206ENST00000454704 FGD5Q6ZNL6 1462 aa16.98■□□□□ 0.31
GTF3C2-206ENST00000454704 SNAPC4Q5SXM2 1469 aa16.97■□□□□ 0.31
GTF3C2-206ENST00000454704 CUX1P39880 1505 aa16.96■□□□□ 0.31
GTF3C2-206ENST00000454704 WDR97A6NE52 1622 aa16.95■□□□□ 0.3
GTF3C2-206ENST00000454704 CLASP1Q7Z460 1538 aa16.91■□□□□ 0.3
GTF3C2-206ENST00000454704 PCGF6Q9BYE7 350 aa16.9■□□□□ 0.3
GTF3C2-206ENST00000454704 MAGI1Q96QZ7 1491 aaPredicted RBP16.89■□□□□ 0.29
GTF3C2-206ENST00000454704 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
GTF3C2-206ENST00000454704 GRIN2BQ13224 1484 aa16.88■□□□□ 0.29
GTF3C2-206ENST00000454704 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
GTF3C2-206ENST00000454704 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
GTF3C2-206ENST00000454704 LOC105371045A0A1W2PR82 267 aa16.87■□□□□ 0.29
GTF3C2-206ENST00000454704 CHMP7Q8WUX9 453 aaPredicted RBP16.87■□□□□ 0.29
GTF3C2-206ENST00000454704 SYNJ2O15056 1496 aa16.85■□□□□ 0.29
GTF3C2-206ENST00000454704 PBRM1Q86U86 1689 aa16.84■□□□□ 0.29
GTF3C2-206ENST00000454704 GAPVD1Q14C86 1478 aa16.8■□□□□ 0.28
GTF3C2-206ENST00000454704 ABCA5Q8WWZ7 1642 aa16.79■□□□□ 0.28
GTF3C2-206ENST00000454704 ABCA10Q8WWZ4 1543 aa16.77■□□□□ 0.28
GTF3C2-206ENST00000454704 ZEB1P37275 1124 aaPredicted RBP16.7■□□□□ 0.26
GTF3C2-206ENST00000454704 GRIN2AQ12879 1464 aa16.67■□□□□ 0.26
GTF3C2-206ENST00000454704 ADAMTS12P58397 1594 aa16.67■□□□□ 0.26
GTF3C2-206ENST00000454704 WRNQ14191 1432 aaPredicted RBP eCLIP16.67■□□□□ 0.26
GTF3C2-206ENST00000454704 ERCC6L2Q5T890 1561 aa16.65■□□□□ 0.26
GTF3C2-206ENST00000454704 EEA1Q15075 1411 aa16.65■□□□□ 0.26
GTF3C2-206ENST00000454704 BIVM-ERCC5R4GMW8 1640 aa16.65■□□□□ 0.26
GTF3C2-206ENST00000454704 TOP2BQ02880 1626 aa16.64■□□□□ 0.25
GTF3C2-206ENST00000454704 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
GTF3C2-206ENST00000454704 NUP160Q12769 1436 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms