Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 NARS-201ENST00000256854 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.044e-7■■□□□ 12.8
U2AF1Q01081 NARS-204ENST00000586807 1608 ntTSL 214.86□□□□□ -0.034e-7■■□□□ 12.8
U2AF1Q01081 CSNK2A1-202ENST00000349736 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.426e-7■■□□□ 12.8
U2AF1Q01081 NARS-210ENST00000589314 1036 ntTSL 511.56□□□□□ -0.564e-7■■□□□ 12.8
U2AF1Q01081 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.66e-7■■□□□ 12.8
U2AF1Q01081 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC8.57□□□□□ -1.046e-7■■□□□ 12.8
U2AF1Q01081 SON-208ENST00000455528 8394 ntTSL 1 (best)15.04■□□□□ -09e-7■■□□□ 12.8
U2AF1Q01081 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC13.64□□□□□ -0.239e-7■■□□□ 12.8
U2AF1Q01081 SON-207ENST00000436227 5269 ntAPPRIS P1 TSL 510.8□□□□□ -0.689e-7■■□□□ 12.8
U2AF1Q01081 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.98□□□□□ -1.299e-7■■□□□ 12.8
U2AF1Q01081 UBAC1-206ENST00000489050 864 ntTSL 312.51□□□□□ -0.412e-9■■□□□ 12.8
U2AF1Q01081 MARCH7-209ENST00000539065 3303 ntTSL 2 BASIC15.71■□□□□ 0.112e-7■■□□□ 12.8
U2AF1Q01081 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.152e-7■■□□□ 12.8
U2AF1Q01081 MARCH7-208ENST00000478396 797 ntTSL 56.49□□□□□ -1.372e-7■■□□□ 12.8
U2AF1Q01081 MARCH7-204ENST00000420397 983 ntTSL 55.52□□□□□ -1.532e-7■■□□□ 12.8
U2AF1Q01081 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.762e-7■■□□□ 12.8
U2AF1Q01081 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.84□□□□□ -1.952e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-207ENST00000461195 787 ntTSL 230.1■■■□□ 2.413e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-204ENST00000422344 631 ntTSL 329.3■■■□□ 2.283e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.27■■■□□ 2.283e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC29.27■■■□□ 2.283e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-203ENST00000394925 702 ntTSL 228.24■■■□□ 2.113e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-216ENST00000586813 789 ntTSL 325.89■■□□□ 1.743e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.263e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-212ENST00000498540 748 ntTSL 319.65■□□□□ 0.743e-7■■□□□ 12.8
U2AF1Q01081 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.599e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-215ENST00000584944 825 ntTSL 218.49■□□□□ 0.553e-7■■□□□ 12.8
U2AF1Q01081 LMO7-225ENST00000533809 578 ntTSL 418.24■□□□□ 0.513e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-210ENST00000475329 544 ntTSL 318.19■□□□□ 0.53e-7■■□□□ 12.8
U2AF1Q01081 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.383e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-209ENST00000473421 585 ntTSL 316.9■□□□□ 0.33e-7■■□□□ 12.8
U2AF1Q01081 VPS52-220ENST00000493674 878 ntTSL 216.82■□□□□ 0.283e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC16.36■□□□□ 0.213e-7■■□□□ 12.8
U2AF1Q01081 VPS52-218ENST00000482399 3338 ntTSL 2 BASIC16.24■□□□□ 0.193e-7■■□□□ 12.8
U2AF1Q01081 VPS52-213ENST00000461743 547 ntTSL 315.83■□□□□ 0.123e-7■■□□□ 12.8
U2AF1Q01081 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.069e-7■■□□□ 12.8
U2AF1Q01081 TRAF4-206ENST00000454852 672 ntTSL 314.99□□□□□ -0.013e-7■■□□□ 12.8
U2AF1Q01081 ZNF207-201ENST00000321233 2283 ntTSL 1 (best) BASIC14.41□□□□□ -0.13e-12■■□□□ 12.8
U2AF1Q01081 VPS52-217ENST00000478934 2602 ntTSL 214.04□□□□□ -0.163e-7■■□□□ 12.8
U2AF1Q01081 VPS52-216ENST00000471309 505 ntTSL 212.41□□□□□ -0.423e-7■■□□□ 12.8
U2AF1Q01081 ZNF207-204ENST00000394673 2124 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.593e-12■■□□□ 12.8
U2AF1Q01081 VPS52-222ENST00000495981 743 ntTSL 1 (best)5.51□□□□□ -1.533e-7■■□□□ 12.8
U2AF1Q01081 ADGRG6-210ENST00000508295 583 ntTSL 34.83□□□□□ -1.641e-10■■□□□ 12.8
U2AF1Q01081 IST1-223ENST00000545518 710 ntTSL 216.13■□□□□ 0.173e-6■■□□□ 12.8
U2AF1Q01081 IST1-216ENST00000539186 542 ntTSL 413.2□□□□□ -0.33e-6■■□□□ 12.8
U2AF1Q01081 IST1-204ENST00000424485 521 ntTSL 412.01□□□□□ -0.493e-6■■□□□ 12.8
U2AF1Q01081 IST1-224ENST00000566536 612 ntTSL 211.73□□□□□ -0.533e-6■■□□□ 12.8
U2AF1Q01081 DHX15-201ENST00000336812 2994 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.198e-12■■□□□ 12.8
U2AF1Q01081 DHX15-204ENST00000508032 3028 ntTSL 1 (best)5.01□□□□□ -1.618e-12■■□□□ 12.8
U2AF1Q01081 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.033e-16■■□□□ 12.8
U2AF1Q01081 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.643e-16■■□□□ 12.8
U2AF1Q01081 PPP1CB-201ENST00000296122 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.373e-16■■□□□ 12.8
U2AF1Q01081 SPDYA-205ENST00000462832 2081 ntTSL 25.51□□□□□ -1.533e-16■■□□□ 12.8
U2AF1Q01081 RAB6A-206ENST00000540771 699 ntTSL 529.89■■■□□ 2.384e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC29.33■■■□□ 2.294e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC24.38■■□□□ 1.494e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.344e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-202ENST00000336083 3085 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.084e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-209ENST00000541973 1104 ntTSL 2 BASIC12.5□□□□□ -0.414e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-205ENST00000537446 447 ntTSL 39.4□□□□□ -0.94e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-210ENST00000545625 447 ntTSL 39.21□□□□□ -0.944e-9■■□□□ 12.7
U2AF1Q01081 RAB6A-203ENST00000400470 522 ntTSL 34.46□□□□□ -1.74e-9■■□□□ 12.7
U2AF1Q01081 SRRM2-213ENST00000573311 732 ntTSL 219.9■□□□□ 0.784e-9■■□□□ 12.7
U2AF1Q01081 SYNJ2-205ENST00000449320 680 ntTSL 410.29□□□□□ -0.762e-7■■□□□ 12.7
U2AF1Q01081 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.014e-7■■□□□ 12.7
U2AF1Q01081 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC8.46□□□□□ -1.064e-7■■□□□ 12.7
U2AF1Q01081 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.562e-19■■□□□ 12.7
U2AF1Q01081 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.094e-7■■□□□ 12.7
U2AF1Q01081 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC23.74■■□□□ 1.394e-7■■□□□ 12.7
U2AF1Q01081 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.624e-7■■□□□ 12.7
U2AF1Q01081 TMEM41B-201ENST00000299596 1443 ntTSL 1 (best)18.56■□□□□ 0.564e-7■■□□□ 12.7
U2AF1Q01081 TMEM41B-202ENST00000524543 3848 ntTSL 214.36□□□□□ -0.114e-7■■□□□ 12.7
U2AF1Q01081 EPB41L2-207ENST00000456097 1138 ntTSL 515.61■□□□□ 0.092e-6■■□□□ 12.7
U2AF1Q01081 EPB41L2-210ENST00000525198 981 ntTSL 515.37■□□□□ 0.052e-6■■□□□ 12.7
U2AF1Q01081 EPB41L2-217ENST00000527423 962 ntTSL 413.89□□□□□ -0.192e-6■■□□□ 12.7
U2AF1Q01081 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC36.59■■■■□ 3.456e-11■■□□□ 12.7
U2AF1Q01081 CPNE1-205ENST00000401607 1795 ntTSL 533.91■■■■□ 3.026e-11■■□□□ 12.7
U2AF1Q01081 CPNE1-216ENST00000437340 1755 ntTSL 1 (best)33.68■■■□□ 2.986e-11■■□□□ 12.7
U2AF1Q01081 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.616e-11■■□□□ 12.7
U2AF1Q01081 CPNE1-204ENST00000397443 1928 ntAPPRIS P1 TSL 528.25■■■□□ 2.116e-11■■□□□ 12.7
U2AF1Q01081 CPNE1-224ENST00000483359 1975 ntTSL 523.86■■□□□ 1.416e-11■■□□□ 12.7
U2AF1Q01081 CPNE1-228ENST00000498814 550 ntTSL 320.81■□□□□ 0.924e-24■■□□□ 12.7
U2AF1Q01081 CPNE1-209ENST00000415920 731 ntTSL 518.12■□□□□ 0.494e-24■■□□□ 12.7
U2AF1Q01081 CPNE1-225ENST00000483495 1853 ntTSL 517.4■□□□□ 0.384e-24■■□□□ 12.7
U2AF1Q01081 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC17.02■□□□□ 0.324e-24■■□□□ 12.7
U2AF1Q01081 CPNE1-221ENST00000462352 625 ntTSL 215.77■□□□□ 0.124e-24■■□□□ 12.7
U2AF1Q01081 CPNE1-222ENST00000473373 821 ntTSL 215.41■□□□□ 0.064e-24■■□□□ 12.7
U2AF1Q01081 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC32.18■■■□□ 2.744e-12■■□□□ 12.7
U2AF1Q01081 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.8■■■□□ 2.684e-12■■□□□ 12.7
U2AF1Q01081 RCCD1-208ENST00000557266 2110 ntTSL 1 (best)29.24■■■□□ 2.274e-12■■□□□ 12.7
U2AF1Q01081 RCCD1-205ENST00000556333 735 ntTSL 1 (best)27■■□□□ 1.914e-12■■□□□ 12.7
U2AF1Q01081 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.664e-12■■□□□ 12.7
U2AF1Q01081 CARS-204ENST00000439280 1021 ntTSL 323.84■■□□□ 1.414e-12■■□□□ 12.7
U2AF1Q01081 RCCD1-204ENST00000555737 3157 ntTSL 1 (best)22.67■■□□□ 1.224e-12■■□□□ 12.7
U2AF1Q01081 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC20.86■□□□□ 0.934e-12■■□□□ 12.7
U2AF1Q01081 CARS-214ENST00000529772 2637 ntTSL 2 BASIC18.05■□□□□ 0.484e-12■■□□□ 12.7
U2AF1Q01081 CARS-213ENST00000527330 564 ntTSL 417.33■□□□□ 0.364e-12■■□□□ 12.7
U2AF1Q01081 CARS-211ENST00000524825 550 ntTSL 417.33■□□□□ 0.364e-12■■□□□ 12.7
U2AF1Q01081 RCCD1-209ENST00000557750 1696 ntTSL 316.34■□□□□ 0.214e-12■■□□□ 12.7
U2AF1Q01081 CARS-202ENST00000380525 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.24e-12■■□□□ 12.7
Retrieved 100 of 10,096 protein–RNA pairs in 62.2 ms