RNA–Protein interactions for RNA: ENST00000473421.1

TRAF4-209, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 585 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-209ENST00000473421 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
TRAF4-209ENST00000473421 ABCC9O60706 1549 aa29.4■■■□□ 2.3
TRAF4-209ENST00000473421 CCDC180Q9P1Z9 1646 aa28.93■■■□□ 2.22
TRAF4-209ENST00000473421 DNAJC5BQ9UF47 199 aa27.99■■■□□ 2.07
TRAF4-209ENST00000473421 RB1CC1Q8TDY2 1594 aa27.7■■■□□ 2.03
TRAF4-209ENST00000473421 NACADO15069 1562 aa27.44■■□□□ 1.98
TRAF4-209ENST00000473421 DCAF8L2P0C7V8 631 aa27.41■■□□□ 1.98
TRAF4-209ENST00000473421 PABPN1Q86U42 306 aaKnown RBP eCLIP27.4■■□□□ 1.98
TRAF4-209ENST00000473421 UNC13AQ9UPW8 1703 aa27.2■■□□□ 1.94
TRAF4-209ENST00000473421 BICRAQ9NZM4 1560 aa27.06■■□□□ 1.92
TRAF4-209ENST00000473421 MYO15BQ96JP2 1530 aa26.93■■□□□ 1.9
TRAF4-209ENST00000473421 ZCCHC6Q5VYS8 1495 aaKnown RBP26.64■■□□□ 1.86
TRAF4-209ENST00000473421 DCAF1Q9Y4B6 1507 aa26.5■■□□□ 1.83
TRAF4-209ENST00000473421 CC2D2AQ9P2K1 1620 aa26.5■■□□□ 1.83
TRAF4-209ENST00000473421 SCRIBQ14160 1630 aa26.48■■□□□ 1.83
TRAF4-209ENST00000473421 CECR2Q9BXF3 1484 aa26.45■■□□□ 1.82
TRAF4-209ENST00000473421 SHROOM4Q9ULL8 1493 aa26.41■■□□□ 1.82
TRAF4-209ENST00000473421 EIF4G1Q04637 1599 aaKnown RBP26.35■■□□□ 1.81
TRAF4-209ENST00000473421 DNAJC5Q9H3Z4 198 aa25.75■■□□□ 1.71
TRAF4-209ENST00000473421 NCAPD3P42695 1498 aa25.4■■□□□ 1.66
TRAF4-209ENST00000473421 ATAD2BQ9ULI0 1458 aa25.32■■□□□ 1.64
TRAF4-209ENST00000473421 CUX2O14529 1486 aa25.31■■□□□ 1.64
TRAF4-209ENST00000473421 ERCC6Q03468 1493 aa25.29■■□□□ 1.64
TRAF4-209ENST00000473421 NESP48681 1621 aa25.23■■□□□ 1.63
TRAF4-209ENST00000473421 SMARCA4P51532 1647 aa25.19■■□□□ 1.62
TRAF4-209ENST00000473421 HMGXB3Q12766 1538 aa25.12■■□□□ 1.61
TRAF4-209ENST00000473421 SMARCA2P51531 1590 aa25.12■■□□□ 1.61
TRAF4-209ENST00000473421 BAZ1BQ9UIG0 1483 aaKnown RBP25.01■■□□□ 1.59
TRAF4-209ENST00000473421 BAZ1AQ9NRL2 1556 aaPredicted RBP24.97■■□□□ 1.59
TRAF4-209ENST00000473421 THOC2Q8NI27 1593 aaKnown RBP24.92■■□□□ 1.58
TRAF4-209ENST00000473421 MROH2BQ7Z745 1585 aa24.91■■□□□ 1.58
TRAF4-209ENST00000473421 PEG3Q9GZU2 1588 aa24.91■■□□□ 1.58
TRAF4-209ENST00000473421 LAMC3Q9Y6N6 1575 aa24.81■■□□□ 1.56
TRAF4-209ENST00000473421 KIF21AQ7Z4S6 1674 aa24.8■■□□□ 1.56
TRAF4-209ENST00000473421 PDS5BQ9NTI5 1447 aa24.68■■□□□ 1.54
TRAF4-209ENST00000473421 CADPSQ9ULU8 1353 aa24.62■■□□□ 1.53
TRAF4-209ENST00000473421 WIZO95785 1651 aa24.58■■□□□ 1.53
TRAF4-209ENST00000473421 TRIM41Q8WV44 630 aa24.54■■□□□ 1.52
TRAF4-209ENST00000473421 MRC2Q9UBG0 1479 aa24.52■■□□□ 1.52
TRAF4-209ENST00000473421 WDR62O43379 1518 aa24.48■■□□□ 1.51
TRAF4-209ENST00000473421 CEP164Q9UPV0 1460 aa24.36■■□□□ 1.49
TRAF4-209ENST00000473421 FANCD2Q9BXW9 1451 aa24.35■■□□□ 1.49
TRAF4-209ENST00000473421 CFTRP13569 1480 aa24.28■■□□□ 1.48
TRAF4-209ENST00000473421 RSF1Q96T23 1441 aaPredicted RBP24.27■■□□□ 1.48
TRAF4-209ENST00000473421 URB2Q14146 1524 aaKnown RBP24.23■■□□□ 1.47
TRAF4-209ENST00000473421 OSCARQ8IYS5 282 aa24.17■■□□□ 1.46
TRAF4-209ENST00000473421 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
TRAF4-209ENST00000473421 ZNF608Q9ULD9 1512 aaPredicted RBP24.01■■□□□ 1.43
TRAF4-209ENST00000473421 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
TRAF4-209ENST00000473421 PRDM2Q13029 1718 aa23.93■■□□□ 1.42
TRAF4-209ENST00000473421 RIMBP3CA6NJZ7 1639 aa23.92■■□□□ 1.42
TRAF4-209ENST00000473421 RIMBP3BA6NNM3 1639 aa23.92■■□□□ 1.42
TRAF4-209ENST00000473421 RIMBP3Q9UFD9 1639 aa23.92■■□□□ 1.42
TRAF4-209ENST00000473421 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
TRAF4-209ENST00000473421 TOPBP1Q92547 1522 aa23.87■■□□□ 1.41
TRAF4-209ENST00000473421 ARHGEF11O15085 1522 aa23.8■■□□□ 1.4
TRAF4-209ENST00000473421 EIF4G3O43432 1585 aaKnown RBP23.76■■□□□ 1.39
TRAF4-209ENST00000473421 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.391e-10■■■■■ 30.8
TRAF4-209ENST00000473421 DNMBPQ6XZF7 1577 aa23.7■■□□□ 1.38
TRAF4-209ENST00000473421 CYB5RLQ6IPT4 315 aa23.7■■□□□ 1.38
TRAF4-209ENST00000473421 TARBP1Q13395 1621 aaKnown RBP23.69■■□□□ 1.38
TRAF4-209ENST00000473421 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
TRAF4-209ENST00000473421 CHD1O14646 1710 aa23.66■■□□□ 1.38
TRAF4-209ENST00000473421 POLA1P09884 1462 aaPredicted RBP23.62■■□□□ 1.37
TRAF4-209ENST00000473421 RAD54L2Q9Y4B4 1467 aa23.61■■□□□ 1.37
TRAF4-209ENST00000473421 FBLN2P98095 1184 aa23.6■■□□□ 1.37
TRAF4-209ENST00000473421 ARAP1Q96P48 1450 aa23.59■■□□□ 1.37
TRAF4-209ENST00000473421 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
TRAF4-209ENST00000473421 SOGA1O94964 1423 aa23.49■■□□□ 1.35
TRAF4-209ENST00000473421 TRHP20396 242 aaPredicted RBP23.48■■□□□ 1.35
TRAF4-209ENST00000473421 SNAPC4Q5SXM2 1469 aa23.43■■□□□ 1.34
TRAF4-209ENST00000473421 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
TRAF4-209ENST00000473421 CUX1P39880 1505 aa23.4■■□□□ 1.34
TRAF4-209ENST00000473421 CLASP1Q7Z460 1538 aa23.38■■□□□ 1.33
TRAF4-209ENST00000473421 CHMP7Q8WUX9 453 aaPredicted RBP23.33■■□□□ 1.33
TRAF4-209ENST00000473421 GRIN2BQ13224 1484 aa23.27■■□□□ 1.32
TRAF4-209ENST00000473421 MAGI1Q96QZ7 1491 aaPredicted RBP23.27■■□□□ 1.32
TRAF4-209ENST00000473421 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
TRAF4-209ENST00000473421 SYNJ1O43426 1573 aa23.24■■□□□ 1.31
TRAF4-209ENST00000473421 SYNJ2O15056 1496 aa23.23■■□□□ 1.31
TRAF4-209ENST00000473421 GAPVD1Q14C86 1478 aa23.18■■□□□ 1.3
TRAF4-209ENST00000473421 PBRM1Q86U86 1689 aa23.17■■□□□ 1.3
TRAF4-209ENST00000473421 ERCC6L2Q5T890 1561 aa23.11■■□□□ 1.29
TRAF4-209ENST00000473421 ABCA5Q8WWZ7 1642 aa23.11■■□□□ 1.29
TRAF4-209ENST00000473421 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
TRAF4-209ENST00000473421 SUPT5HO00267 1087 aaKnown RBP23.02■■□□□ 1.28
TRAF4-209ENST00000473421 GRIN2AQ12879 1464 aa23■■□□□ 1.27
TRAF4-209ENST00000473421 CEP170Q5SW79 1584 aa22.98■■□□□ 1.27
TRAF4-209ENST00000473421 NUP160Q12769 1436 aa22.95■■□□□ 1.26
TRAF4-209ENST00000473421 ADAMTS12P58397 1594 aa22.94■■□□□ 1.26
TRAF4-209ENST00000473421 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
TRAF4-209ENST00000473421 AEBP2Q6ZN18 517 aaPredicted RBP22.93■■□□□ 1.26
TRAF4-209ENST00000473421 TOP2BQ02880 1626 aa22.86■■□□□ 1.25
TRAF4-209ENST00000473421 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
TRAF4-209ENST00000473421 SHROOM2Q13796 1616 aa22.86■■□□□ 1.25
TRAF4-209ENST00000473421 FHAD1B1AJZ9 1412 aa22.85■■□□□ 1.25
TRAF4-209ENST00000473421 ERICH3Q5RHP9 1530 aa22.77■■□□□ 1.24
TRAF4-209ENST00000473421 PRG4Q92954 1404 aaPredicted RBP22.76■■□□□ 1.23
TRAF4-209ENST00000473421 KIF13AQ9H1H9 1805 aa22.75■■□□□ 1.23
TRAF4-209ENST00000473421 JPH4Q96JJ6 628 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms