RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 NISCHQ9Y2I1 1504 aa28.99■■■□□ 2.23
CPNE1-201ENST00000317677 CCDC180Q9P1Z9 1646 aa25.16■■□□□ 1.62
CPNE1-201ENST00000317677 ABCC9O60706 1549 aa24.78■■□□□ 1.56
CPNE1-201ENST00000317677 ZCCHC6Q5VYS8 1495 aaKnown RBP24.41■■□□□ 1.5
CPNE1-201ENST00000317677 DCAF1Q9Y4B6 1507 aa23.93■■□□□ 1.42
CPNE1-201ENST00000317677 SHROOM4Q9ULL8 1493 aa23.85■■□□□ 1.41
CPNE1-201ENST00000317677 DCAF8L2P0C7V8 631 aa23.83■■□□□ 1.41
CPNE1-201ENST00000317677 RB1CC1Q8TDY2 1594 aa23.79■■□□□ 1.4
CPNE1-201ENST00000317677 NACADO15069 1562 aa23.7■■□□□ 1.38
CPNE1-201ENST00000317677 MYO15BQ96JP2 1530 aa23.54■■□□□ 1.36
CPNE1-201ENST00000317677 SCRIBQ14160 1630 aa23.24■■□□□ 1.31
CPNE1-201ENST00000317677 UNC13AQ9UPW8 1703 aa23.23■■□□□ 1.31
CPNE1-201ENST00000317677 PABPN1Q86U42 306 aaKnown RBP eCLIP23.1■■□□□ 1.291e-6■■□□□ 11.6
CPNE1-201ENST00000317677 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
CPNE1-201ENST00000317677 SUPT5HO00267 1087 aaKnown RBP22.98■■□□□ 1.27
CPNE1-201ENST00000317677 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.26
CPNE1-201ENST00000317677 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
CPNE1-201ENST00000317677 RSF1Q96T23 1441 aaPredicted RBP22.58■■□□□ 1.21
CPNE1-201ENST00000317677 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
CPNE1-201ENST00000317677 EIF4G1Q04637 1599 aaKnown RBP22.45■■□□□ 1.18
CPNE1-201ENST00000317677 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
CPNE1-201ENST00000317677 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.17
CPNE1-201ENST00000317677 WIZO95785 1651 aa22.31■■□□□ 1.16
CPNE1-201ENST00000317677 SMARCA4P51532 1647 aa22.27■■□□□ 1.16
CPNE1-201ENST00000317677 CHIC1Q5VXU3 224 aa22.12■■□□□ 1.13
CPNE1-201ENST00000317677 TOP2AP11388 1531 aaKnown RBP22.01■■□□□ 1.11
CPNE1-201ENST00000317677 PEG3Q9GZU2 1588 aa21.97■■□□□ 1.11
CPNE1-201ENST00000317677 SMARCA2P51531 1590 aa21.86■■□□□ 1.09
CPNE1-201ENST00000317677 NCAPD3P42695 1498 aa21.84■■□□□ 1.09
CPNE1-201ENST00000317677 ATAD2BQ9ULI0 1458 aa21.84■■□□□ 1.09
CPNE1-201ENST00000317677 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
CPNE1-201ENST00000317677 HMGXB3Q12766 1538 aa21.72■■□□□ 1.07
CPNE1-201ENST00000317677 BAZ1BQ9UIG0 1483 aaKnown RBP21.69■■□□□ 1.06
CPNE1-201ENST00000317677 TRIM41Q8WV44 630 aa21.52■■□□□ 1.04
CPNE1-201ENST00000317677 ABCC8Q09428 1581 aa21.47■■□□□ 1.03
CPNE1-201ENST00000317677 ERCC6Q03468 1493 aa21.43■■□□□ 1.02
CPNE1-201ENST00000317677 PELP1Q8IZL8 1130 aaKnown RBP21.4■■□□□ 1.02
CPNE1-201ENST00000317677 NESP48681 1621 aa21.36■■□□□ 1.01
CPNE1-201ENST00000317677 LAMC3Q9Y6N6 1575 aa21.33■■□□□ 1
CPNE1-201ENST00000317677 LOC105371045A0A1W2PR82 267 aa21.32■■□□□ 1
CPNE1-201ENST00000317677 CUX2O14529 1486 aa21.28■■□□□ 1
CPNE1-201ENST00000317677 HRCP23327 699 aa21.24■□□□□ 0.99
CPNE1-201ENST00000317677 FAM9AQ8IZU1 332 aaPredicted RBP21.22■□□□□ 0.99
CPNE1-201ENST00000317677 SYNJ1O43426 1573 aa21.21■□□□□ 0.99
CPNE1-201ENST00000317677 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
CPNE1-201ENST00000317677 PDS5BQ9NTI5 1447 aa21.2■□□□□ 0.98
CPNE1-201ENST00000317677 CADPSQ9ULU8 1353 aa21.2■□□□□ 0.98
CPNE1-201ENST00000317677 CFTRP13569 1480 aa21.17■□□□□ 0.98
CPNE1-201ENST00000317677 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
CPNE1-201ENST00000317677 PRDM2Q13029 1718 aa21.12■□□□□ 0.97
CPNE1-201ENST00000317677 THOC2Q8NI27 1593 aaKnown RBP21.11■□□□□ 0.97
CPNE1-201ENST00000317677 SOGA1O94964 1423 aa21.08■□□□□ 0.97
CPNE1-201ENST00000317677 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
CPNE1-201ENST00000317677 BIVM-ERCC5R4GMW8 1640 aa21.05■□□□□ 0.96
CPNE1-201ENST00000317677 RUSC2Q8N2Y8 1516 aa21.04■□□□□ 0.96
CPNE1-201ENST00000317677 CUX1P39880 1505 aa20.99■□□□□ 0.95
CPNE1-201ENST00000317677 MRC2Q9UBG0 1479 aa20.98■□□□□ 0.95
CPNE1-201ENST00000317677 CEP164Q9UPV0 1460 aa20.97■□□□□ 0.95
CPNE1-201ENST00000317677 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
CPNE1-201ENST00000317677 FANCD2Q9BXW9 1451 aa20.95■□□□□ 0.94
CPNE1-201ENST00000317677 EEA1Q15075 1411 aa20.93■□□□□ 0.94
CPNE1-201ENST00000317677 WDR62O43379 1518 aa20.91■□□□□ 0.94
CPNE1-201ENST00000317677 DNAJC5Q9H3Z4 198 aa20.86■□□□□ 0.93
CPNE1-201ENST00000317677 CSRNP3Q8WYN3 585 aa20.85■□□□□ 0.93
CPNE1-201ENST00000317677 MYT1Q01538 1121 aa20.81■□□□□ 0.92
CPNE1-201ENST00000317677 KIF21BO75037 1637 aa20.75■□□□□ 0.91
CPNE1-201ENST00000317677 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
CPNE1-201ENST00000317677 GOLGA3Q08378 1498 aa20.71■□□□□ 0.91
CPNE1-201ENST00000317677 FGD5Q6ZNL6 1462 aa20.69■□□□□ 0.9
CPNE1-201ENST00000317677 TNIKQ9UKE5 1360 aa20.68■□□□□ 0.9
CPNE1-201ENST00000317677 DNMBPQ6XZF7 1577 aa20.68■□□□□ 0.9
CPNE1-201ENST00000317677 TOPBP1Q92547 1522 aa20.65■□□□□ 0.9
CPNE1-201ENST00000317677 RAPGEF2Q9Y4G8 1499 aa20.63■□□□□ 0.89
CPNE1-201ENST00000317677 CEP162Q5TB80 1403 aa20.63■□□□□ 0.89
CPNE1-201ENST00000317677 KIF27Q86VH2 1401 aa20.62■□□□□ 0.89
CPNE1-201ENST00000317677 PRXQ9BXM0 1461 aa20.59■□□□□ 0.89
CPNE1-201ENST00000317677 UBTFP17480 764 aaKnown RBP20.57■□□□□ 0.88
CPNE1-201ENST00000317677 POLA1P09884 1462 aaPredicted RBP20.56■□□□□ 0.88
CPNE1-201ENST00000317677 ERICH3Q5RHP9 1530 aa20.55■□□□□ 0.88
CPNE1-201ENST00000317677 IFT140Q96RY7 1462 aa20.54■□□□□ 0.88
CPNE1-201ENST00000317677 RAD54L2Q9Y4B4 1467 aa20.53■□□□□ 0.88
CPNE1-201ENST00000317677 PCGF6Q9BYE7 350 aa20.49■□□□□ 0.87
CPNE1-201ENST00000317677 WDR97A6NE52 1622 aa20.49■□□□□ 0.87
CPNE1-201ENST00000317677 ABCA10Q8WWZ4 1543 aa20.48■□□□□ 0.87
CPNE1-201ENST00000317677 IGF1RP08069 1367 aa20.47■□□□□ 0.87
CPNE1-201ENST00000317677 PPARGC1BQ86YN6 1023 aaKnown RBP20.42■□□□□ 0.86
CPNE1-201ENST00000317677 ZNF608Q9ULD9 1512 aaPredicted RBP20.41■□□□□ 0.86
CPNE1-201ENST00000317677 CLIP1P30622 1438 aa20.4■□□□□ 0.86
CPNE1-201ENST00000317677 TRIM26Q12899 539 aaPredicted RBP20.38■□□□□ 0.85
CPNE1-201ENST00000317677 TARBP1Q13395 1621 aaKnown RBP20.38■□□□□ 0.85
CPNE1-201ENST00000317677 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
CPNE1-201ENST00000317677 EIF4G3O43432 1585 aaKnown RBP20.36■□□□□ 0.85
CPNE1-201ENST00000317677 ABCA5Q8WWZ7 1642 aa20.35■□□□□ 0.85
CPNE1-201ENST00000317677 CARMIL1Q5VZK9 1371 aa20.34■□□□□ 0.85
CPNE1-201ENST00000317677 AQRO60306 1485 aaKnown RBP eCLIP20.28■□□□□ 0.842e-7■■■■■ 27
CPNE1-201ENST00000317677 TDRD9Q8NDG6 1382 aaKnown RBP20.28■□□□□ 0.84
CPNE1-201ENST00000317677 CUL7Q14999 1698 aa20.27■□□□□ 0.84
CPNE1-201ENST00000317677 RANGAP1P46060 587 aaPredicted RBP20.26■□□□□ 0.83
CPNE1-201ENST00000317677 VPS8Q8N3P4 1428 aa20.25■□□□□ 0.83
CPNE1-201ENST00000317677 ARAP1Q96P48 1450 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms