RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 NISCHQ9Y2I1 1504 aa29.71■■■□□ 2.35
VPS52-220ENST00000493674 CCDC180Q9P1Z9 1646 aa26.27■■□□□ 1.8
VPS52-220ENST00000493674 ABCC9O60706 1549 aa25.01■■□□□ 1.59
VPS52-220ENST00000493674 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.58
VPS52-220ENST00000493674 DCAF1Q9Y4B6 1507 aa24.69■■□□□ 1.54
VPS52-220ENST00000493674 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
VPS52-220ENST00000493674 NACADO15069 1562 aa24.38■■□□□ 1.49
VPS52-220ENST00000493674 RB1CC1Q8TDY2 1594 aa24.28■■□□□ 1.48
VPS52-220ENST00000493674 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
VPS52-220ENST00000493674 UNC13AQ9UPW8 1703 aa23.94■■□□□ 1.42
VPS52-220ENST00000493674 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
VPS52-220ENST00000493674 SHROOM4Q9ULL8 1493 aa23.72■■□□□ 1.39
VPS52-220ENST00000493674 BICRAQ9NZM4 1560 aa23.54■■□□□ 1.36
VPS52-220ENST00000493674 PABPN1Q86U42 306 aaKnown RBP eCLIP23.23■■□□□ 1.31
VPS52-220ENST00000493674 CECR2Q9BXF3 1484 aa23.02■■□□□ 1.28
VPS52-220ENST00000493674 BAZ1AQ9NRL2 1556 aaPredicted RBP22.98■■□□□ 1.27
VPS52-220ENST00000493674 SMARCA4P51532 1647 aa22.97■■□□□ 1.27
VPS52-220ENST00000493674 MROH2BQ7Z745 1585 aa22.91■■□□□ 1.26
VPS52-220ENST00000493674 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
VPS52-220ENST00000493674 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
VPS52-220ENST00000493674 PEG3Q9GZU2 1588 aa22.76■■□□□ 1.23
VPS52-220ENST00000493674 WIZO95785 1651 aa22.76■■□□□ 1.23
VPS52-220ENST00000493674 CC2D2AQ9P2K1 1620 aa22.75■■□□□ 1.23
VPS52-220ENST00000493674 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
VPS52-220ENST00000493674 SUPT5HO00267 1087 aaKnown RBP22.62■■□□□ 1.21
VPS52-220ENST00000493674 SMARCA2P51531 1590 aa22.6■■□□□ 1.21
VPS52-220ENST00000493674 ATAD2BQ9ULI0 1458 aa22.55■■□□□ 1.2
VPS52-220ENST00000493674 TOP2AP11388 1531 aaKnown RBP22.54■■□□□ 1.2
VPS52-220ENST00000493674 HMGXB3Q12766 1538 aa22.48■■□□□ 1.19
VPS52-220ENST00000493674 NCAPD3P42695 1498 aa22.42■■□□□ 1.18
VPS52-220ENST00000493674 BAZ1BQ9UIG0 1483 aaKnown RBP22.39■■□□□ 1.17
VPS52-220ENST00000493674 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
VPS52-220ENST00000493674 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
VPS52-220ENST00000493674 CFTRP13569 1480 aa21.84■■□□□ 1.09
VPS52-220ENST00000493674 LAMC3Q9Y6N6 1575 aa21.8■■□□□ 1.08
VPS52-220ENST00000493674 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
VPS52-220ENST00000493674 NESP48681 1621 aa21.66■■□□□ 1.06
VPS52-220ENST00000493674 ABCC8Q09428 1581 aa21.65■■□□□ 1.06
VPS52-220ENST00000493674 CHIC1Q5VXU3 224 aa21.64■■□□□ 1.05
VPS52-220ENST00000493674 ERCC6Q03468 1493 aa21.62■■□□□ 1.05
VPS52-220ENST00000493674 KIF21AQ7Z4S6 1674 aa21.61■■□□□ 1.05
VPS52-220ENST00000493674 BIVM-ERCC5R4GMW8 1640 aa21.58■■□□□ 1.04
VPS52-220ENST00000493674 PDS5BQ9NTI5 1447 aa21.55■■□□□ 1.04
VPS52-220ENST00000493674 SYNJ1O43426 1573 aa21.54■■□□□ 1.04
VPS52-220ENST00000493674 FANCD2Q9BXW9 1451 aa21.53■■□□□ 1.04
VPS52-220ENST00000493674 TOP2BQ02880 1626 aa21.51■■□□□ 1.03
VPS52-220ENST00000493674 THOC2Q8NI27 1593 aaKnown RBP21.51■■□□□ 1.03
VPS52-220ENST00000493674 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
VPS52-220ENST00000493674 CUX2O14529 1486 aa21.47■■□□□ 1.03
VPS52-220ENST00000493674 CUX1P39880 1505 aa21.46■■□□□ 1.03
VPS52-220ENST00000493674 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.03
VPS52-220ENST00000493674 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
VPS52-220ENST00000493674 MRC2Q9UBG0 1479 aa21.35■■□□□ 1.01
VPS52-220ENST00000493674 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
VPS52-220ENST00000493674 WDR62O43379 1518 aa21.34■■□□□ 1.01
VPS52-220ENST00000493674 URB2Q14146 1524 aaKnown RBP21.33■■□□□ 1
VPS52-220ENST00000493674 TOPBP1Q92547 1522 aa21.32■■□□□ 1
VPS52-220ENST00000493674 WDR97A6NE52 1622 aa21.25■□□□□ 0.99
VPS52-220ENST00000493674 FGD5Q6ZNL6 1462 aa21.23■□□□□ 0.99
VPS52-220ENST00000493674 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
VPS52-220ENST00000493674 TARBP1Q13395 1621 aaKnown RBP21.14■□□□□ 0.97
VPS52-220ENST00000493674 SOGA1O94964 1423 aa21.1■□□□□ 0.97
VPS52-220ENST00000493674 EEA1Q15075 1411 aa21.1■□□□□ 0.97
VPS52-220ENST00000493674 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
VPS52-220ENST00000493674 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
VPS52-220ENST00000493674 ABCA5Q8WWZ7 1642 aa21.04■□□□□ 0.96
VPS52-220ENST00000493674 RAD54L2Q9Y4B4 1467 aa21.03■□□□□ 0.96
VPS52-220ENST00000493674 KIF27Q86VH2 1401 aa20.97■□□□□ 0.95
VPS52-220ENST00000493674 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
VPS52-220ENST00000493674 IFT140Q96RY7 1462 aa20.96■□□□□ 0.95
VPS52-220ENST00000493674 KIF21BO75037 1637 aa20.96■□□□□ 0.95
VPS52-220ENST00000493674 CUL7Q14999 1698 aa20.89■□□□□ 0.93
VPS52-220ENST00000493674 EIF4G3O43432 1585 aaKnown RBP20.88■□□□□ 0.93
VPS52-220ENST00000493674 ERICH3Q5RHP9 1530 aa20.86■□□□□ 0.93
VPS52-220ENST00000493674 FAM9AQ8IZU1 332 aaPredicted RBP20.85■□□□□ 0.93
VPS52-220ENST00000493674 CSRNP3Q8WYN3 585 aa20.84■□□□□ 0.93
VPS52-220ENST00000493674 GAPVD1Q14C86 1478 aa20.83■□□□□ 0.93
VPS52-220ENST00000493674 PRXQ9BXM0 1461 aa20.83■□□□□ 0.93
VPS52-220ENST00000493674 ZNF608Q9ULD9 1512 aaPredicted RBP20.82■□□□□ 0.92
VPS52-220ENST00000493674 IGF1RP08069 1367 aa20.79■□□□□ 0.92
VPS52-220ENST00000493674 GOLGA3Q08378 1498 aa20.77■□□□□ 0.92
VPS52-220ENST00000493674 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.92
VPS52-220ENST00000493674 ADAMTS12P58397 1594 aa20.76■□□□□ 0.91
VPS52-220ENST00000493674 AQRO60306 1485 aaKnown RBP eCLIP20.74■□□□□ 0.918e-8■■□□□ 14.5
VPS52-220ENST00000493674 GRIN2BQ13224 1484 aa20.73■□□□□ 0.91
VPS52-220ENST00000493674 RAPGEF2Q9Y4G8 1499 aa20.73■□□□□ 0.91
VPS52-220ENST00000493674 LOC105371045A0A1W2PR82 267 aa20.69■□□□□ 0.9
VPS52-220ENST00000493674 CTTNBP2Q8WZ74 1663 aa20.68■□□□□ 0.9
VPS52-220ENST00000493674 CARMIL1Q5VZK9 1371 aa20.67■□□□□ 0.9
VPS52-220ENST00000493674 MAGI1Q96QZ7 1491 aaPredicted RBP20.64■□□□□ 0.89
VPS52-220ENST00000493674 SNAPC4Q5SXM2 1469 aa20.62■□□□□ 0.89
VPS52-220ENST00000493674 TNIKQ9UKE5 1360 aa20.61■□□□□ 0.89
VPS52-220ENST00000493674 FHAD1B1AJZ9 1412 aa20.61■□□□□ 0.89
VPS52-220ENST00000493674 CHD1O14646 1710 aa20.59■□□□□ 0.89
VPS52-220ENST00000493674 DNAJC5Q9H3Z4 198 aa20.55■□□□□ 0.88
VPS52-220ENST00000493674 SYNJ2O15056 1496 aa20.52■□□□□ 0.88
VPS52-220ENST00000493674 GRIN2AQ12879 1464 aa20.5■□□□□ 0.87
VPS52-220ENST00000493674 CEP162Q5TB80 1403 aa20.47■□□□□ 0.87
VPS52-220ENST00000493674 EHMT2Q96KQ7 1210 aa20.47■□□□□ 0.87
VPS52-220ENST00000493674 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms