RNA–Protein interactions for RNA: ENST00000400227.7

CSNK2A1-204, Transcript of casein kinase 2 alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CSNK2A1, Length 1,499 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK2A1-204ENST00000400227 AEBP2Q6ZN18 517 aaPredicted RBP27.21■■□□□ 1.95
CSNK2A1-204ENST00000400227 CHIC1Q5VXU3 224 aa26.63■■□□□ 1.85
CSNK2A1-204ENST00000400227 PHF23Q9BUL5 403 aaPredicted RBP23.43■■□□□ 1.34
CSNK2A1-204ENST00000400227 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
CSNK2A1-204ENST00000400227 PLPPR3Q6T4P5 718 aa21.64■■□□□ 1.06
CSNK2A1-204ENST00000400227 FOXD1Q16676 465 aa21.41■■□□□ 1.02
CSNK2A1-204ENST00000400227 PPP6R1Q9UPN7 881 aa20.64■□□□□ 0.89
CSNK2A1-204ENST00000400227 ADRA2BP18089 450 aa20.62■□□□□ 0.89
CSNK2A1-204ENST00000400227 PIAS4Q8N2W9 510 aaPredicted RBP20.2■□□□□ 0.82
CSNK2A1-204ENST00000400227 POTEDQ86YR6 584 aa20.17■□□□□ 0.82
CSNK2A1-204ENST00000400227 MSH5O43196 834 aa19.73■□□□□ 0.75
CSNK2A1-204ENST00000400227 PPP4R3CPQ6ZMV5 832 aa19.08■□□□□ 0.64
CSNK2A1-204ENST00000400227 SCAF1Q9H7N4 1312 aaKnown RBP18.88■□□□□ 0.61
CSNK2A1-204ENST00000400227 KCNA4P22459 653 aa18.69■□□□□ 0.58
CSNK2A1-204ENST00000400227 MAPK8IP2Q13387 824 aaPredicted RBP18.69■□□□□ 0.58
CSNK2A1-204ENST00000400227 NCBP3Q53F19 620 aaKnown RBP18.59■□□□□ 0.57
CSNK2A1-204ENST00000400227 CNKSR2Q8WXI2 1034 aa18.54■□□□□ 0.56
CSNK2A1-204ENST00000400227 DMRT2Q9Y5R5 561 aa18.44■□□□□ 0.54
CSNK2A1-204ENST00000400227 NPM3O75607 178 aaKnown RBP18.32■□□□□ 0.52
CSNK2A1-204ENST00000400227 RNF216Q9NWF9 866 aaPredicted RBP18.17■□□□□ 0.5
CSNK2A1-204ENST00000400227 HOXD11P31277 338 aaPredicted RBP18.08■□□□□ 0.49
CSNK2A1-204ENST00000400227 DNAJC5BQ9UF47 199 aa17.82■□□□□ 0.44
CSNK2A1-204ENST00000400227 SLC4A1APQ9BWU0 796 aaKnown RBP17.81■□□□□ 0.44
CSNK2A1-204ENST00000400227 DCAF8L1A6NGE4 600 aa17.6■□□□□ 0.41
CSNK2A1-204ENST00000400227 EHMT2Q96KQ7 1210 aa17.34■□□□□ 0.37
CSNK2A1-204ENST00000400227 SLC4A2P04920 1241 aa17.29■□□□□ 0.36
CSNK2A1-204ENST00000400227 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.21■□□□□ 0.35
CSNK2A1-204ENST00000400227 ZBTB22O15209 634 aa17.2■□□□□ 0.34
CSNK2A1-204ENST00000400227 FOXD4L1Q9NU39 408 aa17.18■□□□□ 0.34
CSNK2A1-204ENST00000400227 CSRNP3Q8WYN3 585 aa17.14■□□□□ 0.33
CSNK2A1-204ENST00000400227 U3KPZ7 1027 aaPredicted RBP16.95■□□□□ 0.3
CSNK2A1-204ENST00000400227 MYCNP04198 464 aaPredicted RBP16.93■□□□□ 0.3
CSNK2A1-204ENST00000400227 RNF39Q9H2S5 420 aa16.92■□□□□ 0.3
CSNK2A1-204ENST00000400227 CACNB1Q02641 598 aaPredicted RBP16.82■□□□□ 0.28
CSNK2A1-204ENST00000400227 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
CSNK2A1-204ENST00000400227 HNRNPUL2Q1KMD3 747 aaKnown RBP16.76■□□□□ 0.27
CSNK2A1-204ENST00000400227 C1QBPQ07021 282 aaKnown RBP16.72■□□□□ 0.27
CSNK2A1-204ENST00000400227 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
CSNK2A1-204ENST00000400227 ATXN8OSP0DMR3 200 aa16.61■□□□□ 0.25
CSNK2A1-204ENST00000400227 APLP2Q06481 763 aa16.57■□□□□ 0.24
CSNK2A1-204ENST00000400227 ATF5Q9Y2D1 282 aaPredicted RBP16.47■□□□□ 0.23
CSNK2A1-204ENST00000400227 SPINK5Q9NQ38 1064 aaPredicted RBP16.45■□□□□ 0.22
CSNK2A1-204ENST00000400227 CAPN15O75808 1086 aa16.37■□□□□ 0.21
CSNK2A1-204ENST00000400227 ZNF219Q9P2Y4 722 aaPredicted RBP16.33■□□□□ 0.2
CSNK2A1-204ENST00000400227 TRHP20396 242 aaPredicted RBP16.31■□□□□ 0.2
CSNK2A1-204ENST00000400227 DSG3P32926 999 aa16.11■□□□□ 0.17
CSNK2A1-204ENST00000400227 ABCB7O75027 752 aa16.07■□□□□ 0.16
CSNK2A1-204ENST00000400227 POLA2Q14181 598 aa16.07■□□□□ 0.16
CSNK2A1-204ENST00000400227 ZBTB12Q9Y330 459 aaPredicted RBP15.82■□□□□ 0.12
CSNK2A1-204ENST00000400227 FBLN2P98095 1184 aa15.78■□□□□ 0.12
CSNK2A1-204ENST00000400227 MKRN4PQ13434 485 aaPredicted RBP15.76■□□□□ 0.11
CSNK2A1-204ENST00000400227 POTEHQ6S545 545 aa15.61■□□□□ 0.09
CSNK2A1-204ENST00000400227 OSCARQ8IYS5 282 aa15.52■□□□□ 0.07
CSNK2A1-204ENST00000400227 FKBP8Q14318 412 aa15.48■□□□□ 0.07
CSNK2A1-204ENST00000400227 SPDYE4A6NLX3 237 aa15.42■□□□□ 0.06
CSNK2A1-204ENST00000400227 SPDYE2BA6NHP3 402 aa15.4■□□□□ 0.06
CSNK2A1-204ENST00000400227 SPDYE6P0CI01 402 aa15.4■□□□□ 0.06
CSNK2A1-204ENST00000400227 SPDYE2Q495Y8 402 aa15.4■□□□□ 0.06
CSNK2A1-204ENST00000400227 RBM42Q9BTD8 480 aaKnown RBP15.35■□□□□ 0.05
CSNK2A1-204ENST00000400227 ZNF692Q9BU19 519 aaPredicted RBP15.33■□□□□ 0.04
CSNK2A1-204ENST00000400227 SSUH2Q9Y2M2 353 aa15.29■□□□□ 0.04
CSNK2A1-204ENST00000400227 PROM2Q8N271 834 aa15.2■□□□□ 0.02
CSNK2A1-204ENST00000400227 AKT1S1Q96B36 256 aa15.18■□□□□ 0.02
CSNK2A1-204ENST00000400227 PABPN1Q86U42 306 aaKnown RBP eCLIP15.14■□□□□ 0.01
CSNK2A1-204ENST00000400227 REM2Q8IYK8 340 aaPredicted RBP15.02■□□□□ -0
CSNK2A1-204ENST00000400227 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
CSNK2A1-204ENST00000400227 SPDYE1Q8NFV5 336 aaPredicted RBP14.93□□□□□ -0.02
CSNK2A1-204ENST00000400227 STAG3Q9UJ98 1225 aa14.9□□□□□ -0.02
CSNK2A1-204ENST00000400227 PITPNM1O00562 1244 aa14.85□□□□□ -0.03
CSNK2A1-204ENST00000400227 CLEC11AQ9Y240 323 aa14.83□□□□□ -0.03
CSNK2A1-204ENST00000400227 VASPP50552 380 aaPredicted RBP14.73□□□□□ -0.05
CSNK2A1-204ENST00000400227 PRR29P0C7W0 189 aa14.72□□□□□ -0.05
CSNK2A1-204ENST00000400227 CHRDL2Q6WN34 429 aa14.69□□□□□ -0.06
CSNK2A1-204ENST00000400227 MIER1Q8N108 512 aa14.61□□□□□ -0.07
CSNK2A1-204ENST00000400227 PLCD3Q8N3E9 789 aa14.6□□□□□ -0.07
CSNK2A1-204ENST00000400227 FXR2P51116 673 aaKnown RBP eCLIP14.57□□□□□ -0.082e-10■■□□□ 12.3
CSNK2A1-204ENST00000400227 CREBZFQ9NS37 354 aa14.56□□□□□ -0.08
CSNK2A1-204ENST00000400227 PLEKHG5O94827 1062 aa14.54□□□□□ -0.08
CSNK2A1-204ENST00000400227 IFNLR1Q8IU57 520 aaPredicted RBP14.53□□□□□ -0.08
CSNK2A1-204ENST00000400227 PIP4P2Q8N4L2 257 aa14.51□□□□□ -0.09
CSNK2A1-204ENST00000400227 PRKAR2AP13861 404 aaKnown RBP14.47□□□□□ -0.09
CSNK2A1-204ENST00000400227 CHADLQ6NUI6 762 aa14.47□□□□□ -0.09
CSNK2A1-204ENST00000400227 ZBTB47Q9UFB7 747 aaPredicted RBP14.45□□□□□ -0.1
CSNK2A1-204ENST00000400227 KLHL34Q8N239 644 aa14.44□□□□□ -0.1
CSNK2A1-204ENST00000400227 MNX1P50219 401 aaPredicted RBP14.43□□□□□ -0.1
CSNK2A1-204ENST00000400227 FARP1Q9Y4F1 1045 aaPredicted RBP14.36□□□□□ -0.11
CSNK2A1-204ENST00000400227 SPOCK2Q92563 424 aa14.35□□□□□ -0.11
CSNK2A1-204ENST00000400227 NPM1P06748 294 aaKnown RBP eCLIP14.31□□□□□ -0.12
CSNK2A1-204ENST00000400227 NUBP1P53384 320 aa14.25□□□□□ -0.13
CSNK2A1-204ENST00000400227 AMER1Q5JTC6 1135 aaPredicted RBP14.21□□□□□ -0.13
CSNK2A1-204ENST00000400227 RASEFQ8IZ41 740 aa14.18□□□□□ -0.14
CSNK2A1-204ENST00000400227 RTN4Q9NQC3 1192 aaKnown RBP14.16□□□□□ -0.14
CSNK2A1-204ENST00000400227 SP7Q8TDD2 431 aaPredicted RBP14.13□□□□□ -0.15
CSNK2A1-204ENST00000400227 FAM212AQ96EL1 285 aa14.12□□□□□ -0.15
CSNK2A1-204ENST00000400227 GSE1Q14687 1217 aa14.11□□□□□ -0.15
CSNK2A1-204ENST00000400227 DCAF8Q5TAQ9 597 aa14.1□□□□□ -0.15
CSNK2A1-204ENST00000400227 CIZ1Q9ULV3 898 aaPredicted RBP14.1□□□□□ -0.15
CSNK2A1-204ENST00000400227 NISCHQ9Y2I1 1504 aa14.08□□□□□ -0.16
CSNK2A1-204ENST00000400227 C19orf67A6NJJ6 358 aa14.07□□□□□ -0.16
CSNK2A1-204ENST00000400227 CD44P16070 742 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms