RNA–Protein interactions for RNA: ENST00000415920.5

CPNE1-209, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-209ENST00000415920 NISCHQ9Y2I1 1504 aa33.14■■■□□ 2.9
CPNE1-209ENST00000415920 ABCC9O60706 1549 aa30■■■□□ 2.39
CPNE1-209ENST00000415920 CCDC180Q9P1Z9 1646 aa29.78■■■□□ 2.36
CPNE1-209ENST00000415920 RB1CC1Q8TDY2 1594 aa28.4■■■□□ 2.14
CPNE1-209ENST00000415920 DNAJC5BQ9UF47 199 aa28.33■■■□□ 2.13
CPNE1-209ENST00000415920 NACADO15069 1562 aa28.16■■■□□ 2.1
CPNE1-209ENST00000415920 DCAF8L2P0C7V8 631 aa28.02■■■□□ 2.08
CPNE1-209ENST00000415920 PABPN1Q86U42 306 aaKnown RBP eCLIP27.91■■■□□ 2.066e-8■□□□□ 8.9
CPNE1-209ENST00000415920 UNC13AQ9UPW8 1703 aa27.89■■■□□ 2.06
CPNE1-209ENST00000415920 BICRAQ9NZM4 1560 aa27.69■■■□□ 2.02
CPNE1-209ENST00000415920 MYO15BQ96JP2 1530 aa27.69■■■□□ 2.02
CPNE1-209ENST00000415920 ZCCHC6Q5VYS8 1495 aaKnown RBP27.44■■□□□ 1.98
CPNE1-209ENST00000415920 DCAF1Q9Y4B6 1507 aa27.31■■□□□ 1.96
CPNE1-209ENST00000415920 SCRIBQ14160 1630 aa27.21■■□□□ 1.95
CPNE1-209ENST00000415920 SHROOM4Q9ULL8 1493 aa27.13■■□□□ 1.93
CPNE1-209ENST00000415920 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
CPNE1-209ENST00000415920 CECR2Q9BXF3 1484 aa27■■□□□ 1.91
CPNE1-209ENST00000415920 EIF4G1Q04637 1599 aaKnown RBP26.97■■□□□ 1.91
CPNE1-209ENST00000415920 NCAPD3P42695 1498 aa26.02■■□□□ 1.76
CPNE1-209ENST00000415920 DNAJC5Q9H3Z4 198 aa26■■□□□ 1.75
CPNE1-209ENST00000415920 ATAD2BQ9ULI0 1458 aa25.95■■□□□ 1.74
CPNE1-209ENST00000415920 SMARCA4P51532 1647 aa25.91■■□□□ 1.74
CPNE1-209ENST00000415920 ERCC6Q03468 1493 aa25.84■■□□□ 1.73
CPNE1-209ENST00000415920 CUX2O14529 1486 aa25.82■■□□□ 1.72
CPNE1-209ENST00000415920 SMARCA2P51531 1590 aa25.82■■□□□ 1.72
CPNE1-209ENST00000415920 HMGXB3Q12766 1538 aa25.81■■□□□ 1.72
CPNE1-209ENST00000415920 NESP48681 1621 aa25.77■■□□□ 1.72
CPNE1-209ENST00000415920 BAZ1AQ9NRL2 1556 aaPredicted RBP25.69■■□□□ 1.7
CPNE1-209ENST00000415920 BAZ1BQ9UIG0 1483 aaKnown RBP25.67■■□□□ 1.7
CPNE1-209ENST00000415920 PEG3Q9GZU2 1588 aa25.61■■□□□ 1.69
CPNE1-209ENST00000415920 MROH2BQ7Z745 1585 aa25.6■■□□□ 1.69
CPNE1-209ENST00000415920 THOC2Q8NI27 1593 aaKnown RBP25.51■■□□□ 1.67
CPNE1-209ENST00000415920 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
CPNE1-209ENST00000415920 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
CPNE1-209ENST00000415920 WIZO95785 1651 aa25.29■■□□□ 1.64
CPNE1-209ENST00000415920 PDS5BQ9NTI5 1447 aa25.27■■□□□ 1.64
CPNE1-209ENST00000415920 CADPSQ9ULU8 1353 aa25.21■■□□□ 1.63
CPNE1-209ENST00000415920 MRC2Q9UBG0 1479 aa25.12■■□□□ 1.61
CPNE1-209ENST00000415920 WDR62O43379 1518 aa25.09■■□□□ 1.61
CPNE1-209ENST00000415920 CEP164Q9UPV0 1460 aa24.98■■□□□ 1.59
CPNE1-209ENST00000415920 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
CPNE1-209ENST00000415920 FANCD2Q9BXW9 1451 aa24.96■■□□□ 1.59
CPNE1-209ENST00000415920 CFTRP13569 1480 aa24.91■■□□□ 1.58
CPNE1-209ENST00000415920 TOP2AP11388 1531 aaKnown RBP24.9■■□□□ 1.58
CPNE1-209ENST00000415920 TRIM41Q8WV44 630 aa24.84■■□□□ 1.57
CPNE1-209ENST00000415920 URB2Q14146 1524 aaKnown RBP24.81■■□□□ 1.56
CPNE1-209ENST00000415920 PRDM2Q13029 1718 aa24.68■■□□□ 1.54
CPNE1-209ENST00000415920 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.53
CPNE1-209ENST00000415920 OSCARQ8IYS5 282 aa24.6■■□□□ 1.53
CPNE1-209ENST00000415920 ZNF608Q9ULD9 1512 aaPredicted RBP24.56■■□□□ 1.52
CPNE1-209ENST00000415920 TOPBP1Q92547 1522 aa24.49■■□□□ 1.51
CPNE1-209ENST00000415920 IFT140Q96RY7 1462 aa24.47■■□□□ 1.51
CPNE1-209ENST00000415920 RIMBP3CA6NJZ7 1639 aa24.41■■□□□ 1.5
CPNE1-209ENST00000415920 RIMBP3BA6NNM3 1639 aa24.41■■□□□ 1.5
CPNE1-209ENST00000415920 RIMBP3Q9UFD9 1639 aa24.41■■□□□ 1.5
CPNE1-209ENST00000415920 SUPT5HO00267 1087 aaKnown RBP24.4■■□□□ 1.5
CPNE1-209ENST00000415920 EIF4G3O43432 1585 aaKnown RBP24.38■■□□□ 1.49
CPNE1-209ENST00000415920 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
CPNE1-209ENST00000415920 TARBP1Q13395 1621 aaKnown RBP24.31■■□□□ 1.48
CPNE1-209ENST00000415920 ABCC8Q09428 1581 aa24.3■■□□□ 1.48
CPNE1-209ENST00000415920 ARHGEF11O15085 1522 aa24.29■■□□□ 1.48
CPNE1-209ENST00000415920 AQRO60306 1485 aaKnown RBP eCLIP24.28■■□□□ 1.484e-7■■■■□ 25.3
CPNE1-209ENST00000415920 CHD1O14646 1710 aa24.26■■□□□ 1.47
CPNE1-209ENST00000415920 POLA1P09884 1462 aaPredicted RBP24.23■■□□□ 1.47
CPNE1-209ENST00000415920 RAD54L2Q9Y4B4 1467 aa24.19■■□□□ 1.46
CPNE1-209ENST00000415920 TDRD9Q8NDG6 1382 aaKnown RBP24.1■■□□□ 1.45
CPNE1-209ENST00000415920 FBLN2P98095 1184 aa24.09■■□□□ 1.45
CPNE1-209ENST00000415920 CYB5RLQ6IPT4 315 aa24.09■■□□□ 1.45
CPNE1-209ENST00000415920 SOGA1O94964 1423 aa24.07■■□□□ 1.44
CPNE1-209ENST00000415920 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
CPNE1-209ENST00000415920 ARAP1Q96P48 1450 aa24.07■■□□□ 1.44
CPNE1-209ENST00000415920 CUX1P39880 1505 aa24.05■■□□□ 1.44
CPNE1-209ENST00000415920 SNAPC4Q5SXM2 1469 aa24.02■■□□□ 1.44
CPNE1-209ENST00000415920 CLASP1Q7Z460 1538 aa23.94■■□□□ 1.42
CPNE1-209ENST00000415920 WDR97A6NE52 1622 aa23.93■■□□□ 1.42
CPNE1-209ENST00000415920 MAGI1Q96QZ7 1491 aaPredicted RBP23.88■■□□□ 1.41
CPNE1-209ENST00000415920 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
CPNE1-209ENST00000415920 CHMP7Q8WUX9 453 aaPredicted RBP23.85■■□□□ 1.41
CPNE1-209ENST00000415920 SYNJ1O43426 1573 aa23.85■■□□□ 1.41
CPNE1-209ENST00000415920 PBRM1Q86U86 1689 aa23.85■■□□□ 1.41
CPNE1-209ENST00000415920 TRHP20396 242 aaPredicted RBP23.84■■□□□ 1.41
CPNE1-209ENST00000415920 SYNJ2O15056 1496 aa23.82■■□□□ 1.4
CPNE1-209ENST00000415920 GAPVD1Q14C86 1478 aa23.79■■□□□ 1.4
CPNE1-209ENST00000415920 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
CPNE1-209ENST00000415920 ABCA10Q8WWZ4 1543 aa23.74■■□□□ 1.39
CPNE1-209ENST00000415920 ERCC6L2Q5T890 1561 aa23.64■■□□□ 1.37
CPNE1-209ENST00000415920 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
CPNE1-209ENST00000415920 GRIN2AQ12879 1464 aa23.6■■□□□ 1.37
CPNE1-209ENST00000415920 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
CPNE1-209ENST00000415920 TOP2BQ02880 1626 aa23.58■■□□□ 1.36
CPNE1-209ENST00000415920 WRNQ14191 1432 aaPredicted RBP eCLIP23.58■■□□□ 1.36
CPNE1-209ENST00000415920 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
CPNE1-209ENST00000415920 NUP160Q12769 1436 aa23.53■■□□□ 1.36
CPNE1-209ENST00000415920 SHROOM2Q13796 1616 aa23.47■■□□□ 1.35
CPNE1-209ENST00000415920 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
CPNE1-209ENST00000415920 ERICH3Q5RHP9 1530 aa23.42■■□□□ 1.34
CPNE1-209ENST00000415920 PRG4Q92954 1404 aaPredicted RBP23.31■■□□□ 1.32
CPNE1-209ENST00000415920 RUSC2Q8N2Y8 1516 aa23.28■■□□□ 1.32
CPNE1-209ENST00000415920 KIF13AQ9H1H9 1805 aa23.26■■□□□ 1.31
CPNE1-209ENST00000415920 JPH4Q96JJ6 628 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms