RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 NISCHQ9Y2I1 1504 aa37.48■■■■□ 3.59
CPNE1-228ENST00000498814 CCDC180Q9P1Z9 1646 aa33.28■■■□□ 2.92
CPNE1-228ENST00000498814 ABCC9O60706 1549 aa32.27■■■□□ 2.76
CPNE1-228ENST00000498814 ZCCHC6Q5VYS8 1495 aaKnown RBP31.27■■■□□ 2.6
CPNE1-228ENST00000498814 NACADO15069 1562 aa31.22■■■□□ 2.59
CPNE1-228ENST00000498814 RB1CC1Q8TDY2 1594 aa31.19■■■□□ 2.58
CPNE1-228ENST00000498814 DCAF8L2P0C7V8 631 aa31.16■■■□□ 2.58
CPNE1-228ENST00000498814 MYO15BQ96JP2 1530 aa31.11■■■□□ 2.57
CPNE1-228ENST00000498814 DCAF1Q9Y4B6 1507 aa31.05■■■□□ 2.56
CPNE1-228ENST00000498814 UNC13AQ9UPW8 1703 aa30.53■■■□□ 2.48
CPNE1-228ENST00000498814 SCRIBQ14160 1630 aa30.32■■■□□ 2.44
CPNE1-228ENST00000498814 BICRAQ9NZM4 1560 aa30.24■■■□□ 2.43
CPNE1-228ENST00000498814 PABPN1Q86U42 306 aaKnown RBP eCLIP30.17■■■□□ 2.426e-8■□□□□ 8.9
CPNE1-228ENST00000498814 SHROOM4Q9ULL8 1493 aa29.96■■■□□ 2.39
CPNE1-228ENST00000498814 DNAJC5BQ9UF47 199 aa29.43■■■□□ 2.3
CPNE1-228ENST00000498814 EIF4G1Q04637 1599 aaKnown RBP29.41■■■□□ 2.3
CPNE1-228ENST00000498814 CC2D2AQ9P2K1 1620 aa29.24■■■□□ 2.27
CPNE1-228ENST00000498814 CECR2Q9BXF3 1484 aa29.16■■■□□ 2.26
CPNE1-228ENST00000498814 SMARCA4P51532 1647 aa29.05■■■□□ 2.24
CPNE1-228ENST00000498814 BAZ1AQ9NRL2 1556 aaPredicted RBP29.05■■■□□ 2.24
CPNE1-228ENST00000498814 MROH2BQ7Z745 1585 aa28.88■■■□□ 2.21
CPNE1-228ENST00000498814 ATAD2BQ9ULI0 1458 aa28.82■■■□□ 2.2
CPNE1-228ENST00000498814 SMARCA2P51531 1590 aa28.81■■■□□ 2.2
CPNE1-228ENST00000498814 NCAPD3P42695 1498 aa28.78■■■□□ 2.2
CPNE1-228ENST00000498814 PEG3Q9GZU2 1588 aa28.78■■■□□ 2.2
CPNE1-228ENST00000498814 HMGXB3Q12766 1538 aa28.67■■■□□ 2.18
CPNE1-228ENST00000498814 RSF1Q96T23 1441 aaPredicted RBP28.62■■■□□ 2.17
CPNE1-228ENST00000498814 WIZO95785 1651 aa28.59■■■□□ 2.17
CPNE1-228ENST00000498814 BAZ1BQ9UIG0 1483 aaKnown RBP28.59■■■□□ 2.17
CPNE1-228ENST00000498814 TOP2AP11388 1531 aaKnown RBP28.3■■■□□ 2.12
CPNE1-228ENST00000498814 SUPT5HO00267 1087 aaKnown RBP28.01■■■□□ 2.07
CPNE1-228ENST00000498814 LAMC3Q9Y6N6 1575 aa28■■■□□ 2.07
CPNE1-228ENST00000498814 NESP48681 1621 aa28■■■□□ 2.07
CPNE1-228ENST00000498814 CCDC88BA6NC98 1476 aa27.95■■■□□ 2.07
CPNE1-228ENST00000498814 CADPSQ9ULU8 1353 aa27.94■■■□□ 2.06
CPNE1-228ENST00000498814 CFTRP13569 1480 aa27.83■■■□□ 2.04
CPNE1-228ENST00000498814 ERCC6Q03468 1493 aa27.8■■■□□ 2.04
CPNE1-228ENST00000498814 PDS5BQ9NTI5 1447 aa27.78■■■□□ 2.04
CPNE1-228ENST00000498814 KIF21AQ7Z4S6 1674 aa27.72■■■□□ 2.03
CPNE1-228ENST00000498814 PRDM2Q13029 1718 aa27.71■■■□□ 2.03
CPNE1-228ENST00000498814 FANCD2Q9BXW9 1451 aa27.62■■■□□ 2.01
CPNE1-228ENST00000498814 CEP164Q9UPV0 1460 aa27.57■■■□□ 2
CPNE1-228ENST00000498814 THOC2Q8NI27 1593 aaKnown RBP27.56■■■□□ 2
CPNE1-228ENST00000498814 MRC2Q9UBG0 1479 aa27.48■■□□□ 1.99
CPNE1-228ENST00000498814 CUX2O14529 1486 aa27.46■■□□□ 1.99
CPNE1-228ENST00000498814 WDR62O43379 1518 aa27.4■■□□□ 1.98
CPNE1-228ENST00000498814 URB2Q14146 1524 aaKnown RBP27.33■■□□□ 1.97
CPNE1-228ENST00000498814 ABCC8Q09428 1581 aa27.25■■□□□ 1.95
CPNE1-228ENST00000498814 DNMBPQ6XZF7 1577 aa27.21■■□□□ 1.95
CPNE1-228ENST00000498814 TOPBP1Q92547 1522 aa27.21■■□□□ 1.95
CPNE1-228ENST00000498814 CUX1P39880 1505 aa27.08■■□□□ 1.93
CPNE1-228ENST00000498814 POLA1P09884 1462 aaPredicted RBP26.99■■□□□ 1.91
CPNE1-228ENST00000498814 IFT140Q96RY7 1462 aa26.99■■□□□ 1.91
CPNE1-228ENST00000498814 WRNQ14191 1432 aaPredicted RBP eCLIP26.98■■□□□ 1.91
CPNE1-228ENST00000498814 FGD5Q6ZNL6 1462 aa26.94■■□□□ 1.9
CPNE1-228ENST00000498814 BIVM-ERCC5R4GMW8 1640 aa26.94■■□□□ 1.9
CPNE1-228ENST00000498814 TOP2BQ02880 1626 aa26.93■■□□□ 1.9
CPNE1-228ENST00000498814 TARBP1Q13395 1621 aaKnown RBP26.92■■□□□ 1.9
CPNE1-228ENST00000498814 SYNJ1O43426 1573 aa26.91■■□□□ 1.9
CPNE1-228ENST00000498814 SOGA1O94964 1423 aa26.88■■□□□ 1.89
CPNE1-228ENST00000498814 RAD54L2Q9Y4B4 1467 aa26.85■■□□□ 1.89
CPNE1-228ENST00000498814 ZNF608Q9ULD9 1512 aaPredicted RBP26.82■■□□□ 1.88
CPNE1-228ENST00000498814 WDR97A6NE52 1622 aa26.76■■□□□ 1.87
CPNE1-228ENST00000498814 EIF4G3O43432 1585 aaKnown RBP26.75■■□□□ 1.87
CPNE1-228ENST00000498814 ABCA10Q8WWZ4 1543 aa26.72■■□□□ 1.87
CPNE1-228ENST00000498814 AQRO60306 1485 aaKnown RBP eCLIP26.7■■□□□ 1.874e-7■■■■■ 34.6
CPNE1-228ENST00000498814 TDRD9Q8NDG6 1382 aaKnown RBP26.68■■□□□ 1.86
CPNE1-228ENST00000498814 ABCA5Q8WWZ7 1642 aa26.61■■□□□ 1.85
CPNE1-228ENST00000498814 GAPVD1Q14C86 1478 aa26.57■■□□□ 1.84
CPNE1-228ENST00000498814 GRIN2BQ13224 1484 aa26.55■■□□□ 1.84
CPNE1-228ENST00000498814 PBRM1Q86U86 1689 aa26.54■■□□□ 1.84
CPNE1-228ENST00000498814 TRIM41Q8WV44 630 aa26.47■■□□□ 1.83
CPNE1-228ENST00000498814 SNAPC4Q5SXM2 1469 aa26.46■■□□□ 1.83
CPNE1-228ENST00000498814 MAGI1Q96QZ7 1491 aaPredicted RBP26.46■■□□□ 1.83
CPNE1-228ENST00000498814 KIF27Q86VH2 1401 aa26.4■■□□□ 1.82
CPNE1-228ENST00000498814 ERICH3Q5RHP9 1530 aa26.4■■□□□ 1.82
CPNE1-228ENST00000498814 CHD1O14646 1710 aa26.4■■□□□ 1.82
CPNE1-228ENST00000498814 DNAJC5Q9H3Z4 198 aa26.36■■□□□ 1.81
CPNE1-228ENST00000498814 OSCARQ8IYS5 282 aa26.35■■□□□ 1.81
CPNE1-228ENST00000498814 SYNJ2O15056 1496 aa26.35■■□□□ 1.81
CPNE1-228ENST00000498814 FBLN2P98095 1184 aa26.32■■□□□ 1.8
CPNE1-228ENST00000498814 ADAMTS12P58397 1594 aa26.32■■□□□ 1.8
CPNE1-228ENST00000498814 CHIC1Q5VXU3 224 aa26.3■■□□□ 1.8
CPNE1-228ENST00000498814 CHMP7Q8WUX9 453 aaPredicted RBP26.3■■□□□ 1.8
CPNE1-228ENST00000498814 FHAD1B1AJZ9 1412 aa26.28■■□□□ 1.8
CPNE1-228ENST00000498814 IGF1RP08069 1367 aa26.27■■□□□ 1.8
CPNE1-228ENST00000498814 CUL7Q14999 1698 aa26.22■■□□□ 1.79
CPNE1-228ENST00000498814 RUSC2Q8N2Y8 1516 aa26.22■■□□□ 1.79
CPNE1-228ENST00000498814 GRIN2AQ12879 1464 aa26.2■■□□□ 1.78
CPNE1-228ENST00000498814 CARMIL1Q5VZK9 1371 aa26.11■■□□□ 1.77
CPNE1-228ENST00000498814 CLASP1Q7Z460 1538 aa26.1■■□□□ 1.77
CPNE1-228ENST00000498814 NUP160Q12769 1436 aa26.08■■□□□ 1.77
CPNE1-228ENST00000498814 CEP170Q5SW79 1584 aa26.07■■□□□ 1.76
CPNE1-228ENST00000498814 EEA1Q15075 1411 aa26.05■■□□□ 1.76
CPNE1-228ENST00000498814 RAPGEF2Q9Y4G8 1499 aa25.99■■□□□ 1.75
CPNE1-228ENST00000498814 CSRNP3Q8WYN3 585 aa25.97■■□□□ 1.75
CPNE1-228ENST00000498814 PRXQ9BXM0 1461 aa25.96■■□□□ 1.75
CPNE1-228ENST00000498814 ARHGEF11O15085 1522 aa25.93■■□□□ 1.74
CPNE1-228ENST00000498814 RIMBP3CA6NJZ7 1639 aa25.92■■□□□ 1.74
CPNE1-228ENST00000498814 RIMBP3BA6NNM3 1639 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms