RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 NISCHQ9Y2I1 1504 aa28.95■■■□□ 2.23
VPS52-213ENST00000461743 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
VPS52-213ENST00000461743 ABCC9O60706 1549 aa25.01■■□□□ 1.59
VPS52-213ENST00000461743 RB1CC1Q8TDY2 1594 aa24.28■■□□□ 1.48
VPS52-213ENST00000461743 NACADO15069 1562 aa24.26■■□□□ 1.47
VPS52-213ENST00000461743 MYO15BQ96JP2 1530 aa24.18■■□□□ 1.46
VPS52-213ENST00000461743 ZCCHC6Q5VYS8 1495 aaKnown RBP24.18■■□□□ 1.46
VPS52-213ENST00000461743 DCAF1Q9Y4B6 1507 aa24.09■■□□□ 1.45
VPS52-213ENST00000461743 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
VPS52-213ENST00000461743 UNC13AQ9UPW8 1703 aa23.82■■□□□ 1.4
VPS52-213ENST00000461743 BICRAQ9NZM4 1560 aa23.48■■□□□ 1.35
VPS52-213ENST00000461743 SCRIBQ14160 1630 aa23.48■■□□□ 1.35
VPS52-213ENST00000461743 SHROOM4Q9ULL8 1493 aa23.41■■□□□ 1.34
VPS52-213ENST00000461743 PABPN1Q86U42 306 aaKnown RBP eCLIP23.23■■□□□ 1.31
VPS52-213ENST00000461743 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
VPS52-213ENST00000461743 CC2D2AQ9P2K1 1620 aa22.75■■□□□ 1.23
VPS52-213ENST00000461743 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
VPS52-213ENST00000461743 SMARCA4P51532 1647 aa22.53■■□□□ 1.2
VPS52-213ENST00000461743 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
VPS52-213ENST00000461743 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
VPS52-213ENST00000461743 SMARCA2P51531 1590 aa22.38■■□□□ 1.17
VPS52-213ENST00000461743 PEG3Q9GZU2 1588 aa22.36■■□□□ 1.17
VPS52-213ENST00000461743 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
VPS52-213ENST00000461743 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
VPS52-213ENST00000461743 ATAD2BQ9ULI0 1458 aa22.29■■□□□ 1.16
VPS52-213ENST00000461743 MROH2BQ7Z745 1585 aa22.26■■□□□ 1.15
VPS52-213ENST00000461743 BAZ1BQ9UIG0 1483 aaKnown RBP22.14■■□□□ 1.13
VPS52-213ENST00000461743 WIZO95785 1651 aa22.08■■□□□ 1.13
VPS52-213ENST00000461743 RSF1Q96T23 1441 aaPredicted RBP21.99■■□□□ 1.11
VPS52-213ENST00000461743 TOP2AP11388 1531 aaKnown RBP21.9■■□□□ 1.1
VPS52-213ENST00000461743 LAMC3Q9Y6N6 1575 aa21.8■■□□□ 1.08
VPS52-213ENST00000461743 NESP48681 1621 aa21.66■■□□□ 1.06
VPS52-213ENST00000461743 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
VPS52-213ENST00000461743 ERCC6Q03468 1493 aa21.62■■□□□ 1.05
VPS52-213ENST00000461743 KIF21AQ7Z4S6 1674 aa21.6■■□□□ 1.05
VPS52-213ENST00000461743 CADPSQ9ULU8 1353 aa21.6■■□□□ 1.05
VPS52-213ENST00000461743 PDS5BQ9NTI5 1447 aa21.55■■□□□ 1.04
VPS52-213ENST00000461743 CFTRP13569 1480 aa21.53■■□□□ 1.04
VPS52-213ENST00000461743 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.03
VPS52-213ENST00000461743 THOC2Q8NI27 1593 aaKnown RBP21.51■■□□□ 1.03
VPS52-213ENST00000461743 CUX2O14529 1486 aa21.47■■□□□ 1.03
VPS52-213ENST00000461743 CEP164Q9UPV0 1460 aa21.39■■□□□ 1.02
VPS52-213ENST00000461743 FANCD2Q9BXW9 1451 aa21.38■■□□□ 1.01
VPS52-213ENST00000461743 MRC2Q9UBG0 1479 aa21.35■■□□□ 1.01
VPS52-213ENST00000461743 WDR62O43379 1518 aa21.34■■□□□ 1.01
VPS52-213ENST00000461743 SUPT5HO00267 1087 aaKnown RBP21.28■■□□□ 1
VPS52-213ENST00000461743 URB2Q14146 1524 aaKnown RBP21.16■□□□□ 0.98
VPS52-213ENST00000461743 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
VPS52-213ENST00000461743 DNMBPQ6XZF7 1577 aa21.12■□□□□ 0.97
VPS52-213ENST00000461743 TOPBP1Q92547 1522 aa21.06■□□□□ 0.96
VPS52-213ENST00000461743 IFT140Q96RY7 1462 aa20.94■□□□□ 0.94
VPS52-213ENST00000461743 CUX1P39880 1505 aa20.92■□□□□ 0.94
VPS52-213ENST00000461743 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.94
VPS52-213ENST00000461743 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
VPS52-213ENST00000461743 WDR97A6NE52 1622 aa20.88■□□□□ 0.93
VPS52-213ENST00000461743 BIVM-ERCC5R4GMW8 1640 aa20.88■□□□□ 0.93
VPS52-213ENST00000461743 TOP2BQ02880 1626 aa20.83■□□□□ 0.93
VPS52-213ENST00000461743 EIF4G3O43432 1585 aaKnown RBP20.83■□□□□ 0.92
VPS52-213ENST00000461743 FGD5Q6ZNL6 1462 aa20.82■□□□□ 0.92
VPS52-213ENST00000461743 SYNJ1O43426 1573 aa20.77■□□□□ 0.92
VPS52-213ENST00000461743 WRNQ14191 1432 aaPredicted RBP eCLIP20.77■□□□□ 0.91
VPS52-213ENST00000461743 ZNF608Q9ULD9 1512 aaPredicted RBP20.74■□□□□ 0.91
VPS52-213ENST00000461743 SOGA1O94964 1423 aa20.71■□□□□ 0.91
VPS52-213ENST00000461743 RAD54L2Q9Y4B4 1467 aa20.7■□□□□ 0.9
VPS52-213ENST00000461743 ABCA10Q8WWZ4 1543 aa20.68■□□□□ 0.9
VPS52-213ENST00000461743 PBRM1Q86U86 1689 aa20.67■□□□□ 0.9
VPS52-213ENST00000461743 ABCA5Q8WWZ7 1642 aa20.66■□□□□ 0.9
VPS52-213ENST00000461743 AQRO60306 1485 aaKnown RBP eCLIP20.6■□□□□ 0.898e-8■■□□□ 14.5
VPS52-213ENST00000461743 CHD1O14646 1710 aa20.59■□□□□ 0.89
VPS52-213ENST00000461743 GRIN2BQ13224 1484 aa20.56■□□□□ 0.88
VPS52-213ENST00000461743 MAGI1Q96QZ7 1491 aaPredicted RBP20.56■□□□□ 0.88
VPS52-213ENST00000461743 DNAJC5Q9H3Z4 198 aa20.55■□□□□ 0.88
VPS52-213ENST00000461743 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
VPS52-213ENST00000461743 TDRD9Q8NDG6 1382 aaKnown RBP20.53■□□□□ 0.88
VPS52-213ENST00000461743 SNAPC4Q5SXM2 1469 aa20.5■□□□□ 0.87
VPS52-213ENST00000461743 ERICH3Q5RHP9 1530 aa20.47■□□□□ 0.87
VPS52-213ENST00000461743 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
VPS52-213ENST00000461743 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
VPS52-213ENST00000461743 OSCARQ8IYS5 282 aa20.39■□□□□ 0.85
VPS52-213ENST00000461743 CUL7Q14999 1698 aa20.37■□□□□ 0.85
VPS52-213ENST00000461743 KIF27Q86VH2 1401 aa20.35■□□□□ 0.85
VPS52-213ENST00000461743 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
VPS52-213ENST00000461743 FHAD1B1AJZ9 1412 aa20.31■□□□□ 0.84
VPS52-213ENST00000461743 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
VPS52-213ENST00000461743 CHMP7Q8WUX9 453 aaPredicted RBP20.27■□□□□ 0.84
VPS52-213ENST00000461743 FBLN2P98095 1184 aa20.24■□□□□ 0.83
VPS52-213ENST00000461743 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
VPS52-213ENST00000461743 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
VPS52-213ENST00000461743 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
VPS52-213ENST00000461743 CEP170Q5SW79 1584 aa20.21■□□□□ 0.83
VPS52-213ENST00000461743 NUP160Q12769 1436 aa20.21■□□□□ 0.83
VPS52-213ENST00000461743 ARHGEF11O15085 1522 aa20.2■□□□□ 0.82
VPS52-213ENST00000461743 TRIM41Q8WV44 630 aa20.16■□□□□ 0.82
VPS52-213ENST00000461743 IGF1RP08069 1367 aa20.16■□□□□ 0.82
VPS52-213ENST00000461743 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
VPS52-213ENST00000461743 SHROOM2Q13796 1616 aa20.16■□□□□ 0.82
VPS52-213ENST00000461743 CARMIL1Q5VZK9 1371 aa20.07■□□□□ 0.8
VPS52-213ENST00000461743 EEA1Q15075 1411 aa20.05■□□□□ 0.8
VPS52-213ENST00000461743 CTTNBP2Q8WZ74 1663 aa20.03■□□□□ 0.8
VPS52-213ENST00000461743 RAPGEF2Q9Y4G8 1499 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms