RNA–Protein interactions for RNA: ENST00000462352.5

CPNE1-221, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-221ENST00000462352 NISCHQ9Y2I1 1504 aa28.21■■■□□ 2.11
CPNE1-221ENST00000462352 CCDC180Q9P1Z9 1646 aa24.94■■□□□ 1.58
CPNE1-221ENST00000462352 ABCC9O60706 1549 aa24.2■■□□□ 1.46
CPNE1-221ENST00000462352 ZCCHC6Q5VYS8 1495 aaKnown RBP23.56■■□□□ 1.36
CPNE1-221ENST00000462352 DCAF8L2P0C7V8 631 aa23.48■■□□□ 1.35
CPNE1-221ENST00000462352 NACADO15069 1562 aa23.4■■□□□ 1.34
CPNE1-221ENST00000462352 RB1CC1Q8TDY2 1594 aa23.37■■□□□ 1.33
CPNE1-221ENST00000462352 MYO15BQ96JP2 1530 aa23.34■■□□□ 1.33
CPNE1-221ENST00000462352 DCAF1Q9Y4B6 1507 aa23.34■■□□□ 1.33
CPNE1-221ENST00000462352 UNC13AQ9UPW8 1703 aa22.82■■□□□ 1.24
CPNE1-221ENST00000462352 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
CPNE1-221ENST00000462352 PABPN1Q86U42 306 aaKnown RBP eCLIP22.66■■□□□ 1.226e-8■□□□□ 8.9
CPNE1-221ENST00000462352 BICRAQ9NZM4 1560 aa22.66■■□□□ 1.22
CPNE1-221ENST00000462352 SHROOM4Q9ULL8 1493 aa22.45■■□□□ 1.18
CPNE1-221ENST00000462352 EIF4G1Q04637 1599 aaKnown RBP22.04■■□□□ 1.12
CPNE1-221ENST00000462352 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
CPNE1-221ENST00000462352 CECR2Q9BXF3 1484 aa21.96■■□□□ 1.11
CPNE1-221ENST00000462352 CC2D2AQ9P2K1 1620 aa21.88■■□□□ 1.09
CPNE1-221ENST00000462352 BAZ1AQ9NRL2 1556 aaPredicted RBP21.84■■□□□ 1.09
CPNE1-221ENST00000462352 SMARCA4P51532 1647 aa21.83■■□□□ 1.08
CPNE1-221ENST00000462352 MROH2BQ7Z745 1585 aa21.75■■□□□ 1.07
CPNE1-221ENST00000462352 ATAD2BQ9ULI0 1458 aa21.65■■□□□ 1.06
CPNE1-221ENST00000462352 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
CPNE1-221ENST00000462352 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
CPNE1-221ENST00000462352 NCAPD3P42695 1498 aa21.6■■□□□ 1.05
CPNE1-221ENST00000462352 RSF1Q96T23 1441 aaPredicted RBP21.6■■□□□ 1.05
CPNE1-221ENST00000462352 WIZO95785 1651 aa21.52■■□□□ 1.04
CPNE1-221ENST00000462352 HMGXB3Q12766 1538 aa21.51■■□□□ 1.03
CPNE1-221ENST00000462352 BAZ1BQ9UIG0 1483 aaKnown RBP21.49■■□□□ 1.03
CPNE1-221ENST00000462352 TOP2AP11388 1531 aaKnown RBP21.31■■□□□ 1
CPNE1-221ENST00000462352 SUPT5HO00267 1087 aaKnown RBP21.25■□□□□ 0.99
CPNE1-221ENST00000462352 CCDC88BA6NC98 1476 aa21.07■□□□□ 0.96
CPNE1-221ENST00000462352 NESP48681 1621 aa21.02■□□□□ 0.96
CPNE1-221ENST00000462352 CADPSQ9ULU8 1353 aa20.99■□□□□ 0.95
CPNE1-221ENST00000462352 LAMC3Q9Y6N6 1575 aa20.98■□□□□ 0.95
CPNE1-221ENST00000462352 CFTRP13569 1480 aa20.92■□□□□ 0.94
CPNE1-221ENST00000462352 PDS5BQ9NTI5 1447 aa20.84■□□□□ 0.93
CPNE1-221ENST00000462352 ERCC6Q03468 1493 aa20.82■□□□□ 0.92
CPNE1-221ENST00000462352 KIF21AQ7Z4S6 1674 aa20.76■□□□□ 0.91
CPNE1-221ENST00000462352 PRDM2Q13029 1718 aa20.75■□□□□ 0.91
CPNE1-221ENST00000462352 FANCD2Q9BXW9 1451 aa20.75■□□□□ 0.91
CPNE1-221ENST00000462352 CEP164Q9UPV0 1460 aa20.69■□□□□ 0.9
CPNE1-221ENST00000462352 THOC2Q8NI27 1593 aaKnown RBP20.63■□□□□ 0.89
CPNE1-221ENST00000462352 MRC2Q9UBG0 1479 aa20.62■□□□□ 0.89
CPNE1-221ENST00000462352 WDR62O43379 1518 aa20.53■□□□□ 0.88
CPNE1-221ENST00000462352 URB2Q14146 1524 aaKnown RBP20.53■□□□□ 0.88
CPNE1-221ENST00000462352 CUX2O14529 1486 aa20.51■□□□□ 0.87
CPNE1-221ENST00000462352 TOPBP1Q92547 1522 aa20.44■□□□□ 0.86
CPNE1-221ENST00000462352 ABCC8Q09428 1581 aa20.44■□□□□ 0.86
CPNE1-221ENST00000462352 DNMBPQ6XZF7 1577 aa20.44■□□□□ 0.86
CPNE1-221ENST00000462352 CUX1P39880 1505 aa20.38■□□□□ 0.85
CPNE1-221ENST00000462352 WRNQ14191 1432 aaPredicted RBP eCLIP20.36■□□□□ 0.85
CPNE1-221ENST00000462352 POLA1P09884 1462 aaPredicted RBP20.3■□□□□ 0.84
CPNE1-221ENST00000462352 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
CPNE1-221ENST00000462352 FGD5Q6ZNL6 1462 aa20.28■□□□□ 0.84
CPNE1-221ENST00000462352 TOP2BQ02880 1626 aa20.27■□□□□ 0.84
CPNE1-221ENST00000462352 BIVM-ERCC5R4GMW8 1640 aa20.27■□□□□ 0.83
CPNE1-221ENST00000462352 IFT140Q96RY7 1462 aa20.25■□□□□ 0.83
CPNE1-221ENST00000462352 SOGA1O94964 1423 aa20.21■□□□□ 0.83
CPNE1-221ENST00000462352 RAD54L2Q9Y4B4 1467 aa20.21■□□□□ 0.83
CPNE1-221ENST00000462352 TARBP1Q13395 1621 aaKnown RBP20.2■□□□□ 0.82
CPNE1-221ENST00000462352 ZNF608Q9ULD9 1512 aaPredicted RBP20.15■□□□□ 0.82
CPNE1-221ENST00000462352 ABCA10Q8WWZ4 1543 aa20.09■□□□□ 0.81
CPNE1-221ENST00000462352 WDR97A6NE52 1622 aa20.09■□□□□ 0.81
CPNE1-221ENST00000462352 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
CPNE1-221ENST00000462352 EIF4G3O43432 1585 aaKnown RBP20.07■□□□□ 0.8
CPNE1-221ENST00000462352 AQRO60306 1485 aaKnown RBP eCLIP20.06■□□□□ 0.86e-7■■■■■ 34.6
CPNE1-221ENST00000462352 TRIM41Q8WV44 630 aa20.05■□□□□ 0.8
CPNE1-221ENST00000462352 GAPVD1Q14C86 1478 aa19.99■□□□□ 0.79
CPNE1-221ENST00000462352 ABCA5Q8WWZ7 1642 aa19.98■□□□□ 0.79
CPNE1-221ENST00000462352 CHIC1Q5VXU3 224 aa19.98■□□□□ 0.79
CPNE1-221ENST00000462352 GRIN2BQ13224 1484 aa19.94■□□□□ 0.78
CPNE1-221ENST00000462352 PBRM1Q86U86 1689 aa19.91■□□□□ 0.78
CPNE1-221ENST00000462352 KIF27Q86VH2 1401 aa19.9■□□□□ 0.78
CPNE1-221ENST00000462352 SNAPC4Q5SXM2 1469 aa19.88■□□□□ 0.77
CPNE1-221ENST00000462352 MAGI1Q96QZ7 1491 aaPredicted RBP19.86■□□□□ 0.77
CPNE1-221ENST00000462352 ERICH3Q5RHP9 1530 aa19.85■□□□□ 0.77
CPNE1-221ENST00000462352 RUSC2Q8N2Y8 1516 aa19.81■□□□□ 0.76
CPNE1-221ENST00000462352 IGF1RP08069 1367 aa19.8■□□□□ 0.76
CPNE1-221ENST00000462352 SYNJ2O15056 1496 aa19.79■□□□□ 0.76
CPNE1-221ENST00000462352 FBLN2P98095 1184 aa19.78■□□□□ 0.76
CPNE1-221ENST00000462352 ADAMTS12P58397 1594 aa19.78■□□□□ 0.76
CPNE1-221ENST00000462352 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
CPNE1-221ENST00000462352 CHMP7Q8WUX9 453 aaPredicted RBP19.76■□□□□ 0.75
CPNE1-221ENST00000462352 CHD1O14646 1710 aa19.76■□□□□ 0.75
CPNE1-221ENST00000462352 OSCARQ8IYS5 282 aa19.72■□□□□ 0.75
CPNE1-221ENST00000462352 CUL7Q14999 1698 aa19.71■□□□□ 0.75
CPNE1-221ENST00000462352 CARMIL1Q5VZK9 1371 aa19.69■□□□□ 0.74
CPNE1-221ENST00000462352 EEA1Q15075 1411 aa19.68■□□□□ 0.74
CPNE1-221ENST00000462352 GRIN2AQ12879 1464 aa19.68■□□□□ 0.74
CPNE1-221ENST00000462352 FAM9AQ8IZU1 332 aaPredicted RBP19.64■□□□□ 0.73
CPNE1-221ENST00000462352 CSRNP3Q8WYN3 585 aa19.63■□□□□ 0.73
CPNE1-221ENST00000462352 RAPGEF2Q9Y4G8 1499 aa19.6■□□□□ 0.73
CPNE1-221ENST00000462352 NUP160Q12769 1436 aa19.59■□□□□ 0.73
CPNE1-221ENST00000462352 DNAJC5Q9H3Z4 198 aa19.59■□□□□ 0.73
CPNE1-221ENST00000462352 PRXQ9BXM0 1461 aa19.59■□□□□ 0.73
CPNE1-221ENST00000462352 CEP170Q5SW79 1584 aa19.58■□□□□ 0.73
CPNE1-221ENST00000462352 CLASP1Q7Z460 1538 aa19.56■□□□□ 0.72
CPNE1-221ENST00000462352 KIAA0586Q9BVV6 1533 aa19.46■□□□□ 0.71
CPNE1-221ENST00000462352 KIF21BO75037 1637 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms