RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 NISCHQ9Y2I1 1504 aa53.3■■■■■ 6.12
TRAF4-203ENST00000394925 ABCC9O60706 1549 aa48.25■■■■■ 5.31
TRAF4-203ENST00000394925 CCDC180Q9P1Z9 1646 aa47.91■■■■■ 5.26
TRAF4-203ENST00000394925 RB1CC1Q8TDY2 1594 aa45.76■■■■■ 4.92
TRAF4-203ENST00000394925 DNAJC5BQ9UF47 199 aa45.52■■■■■ 4.88
TRAF4-203ENST00000394925 NACADO15069 1562 aa45.37■■■■■ 4.85
TRAF4-203ENST00000394925 DCAF8L2P0C7V8 631 aa45.22■■■■■ 4.83
TRAF4-203ENST00000394925 PABPN1Q86U42 306 aaKnown RBP eCLIP44.91■■■■■ 4.78
TRAF4-203ENST00000394925 UNC13AQ9UPW8 1703 aa44.75■■■■■ 4.75
TRAF4-203ENST00000394925 MYO15BQ96JP2 1530 aa44.62■■■■■ 4.73
TRAF4-203ENST00000394925 BICRAQ9NZM4 1560 aa44.44■■■■■ 4.71
TRAF4-203ENST00000394925 ZCCHC6Q5VYS8 1495 aaKnown RBP44.1■■■■■ 4.65
TRAF4-203ENST00000394925 DCAF1Q9Y4B6 1507 aa43.96■■■■■ 4.63
TRAF4-203ENST00000394925 SHROOM4Q9ULL8 1493 aa43.76■■■■■ 4.6
TRAF4-203ENST00000394925 SCRIBQ14160 1630 aa43.7■■■■■ 4.59
TRAF4-203ENST00000394925 CC2D2AQ9P2K1 1620 aa43.55■■■■■ 4.56
TRAF4-203ENST00000394925 CECR2Q9BXF3 1484 aa43.47■■■■■ 4.55
TRAF4-203ENST00000394925 EIF4G1Q04637 1599 aaKnown RBP43.37■■■■■ 4.53
TRAF4-203ENST00000394925 DNAJC5Q9H3Z4 198 aa41.96■■■■■ 4.31
TRAF4-203ENST00000394925 NCAPD3P42695 1498 aa41.9■■■■■ 4.3
TRAF4-203ENST00000394925 ATAD2BQ9ULI0 1458 aa41.74■■■■■ 4.27
TRAF4-203ENST00000394925 ERCC6Q03468 1493 aa41.67■■■■■ 4.26
TRAF4-203ENST00000394925 CUX2O14529 1486 aa41.64■■■■■ 4.26
TRAF4-203ENST00000394925 SMARCA4P51532 1647 aa41.63■■■■■ 4.26
TRAF4-203ENST00000394925 SMARCA2P51531 1590 aa41.6■■■■■ 4.25
TRAF4-203ENST00000394925 HMGXB3Q12766 1538 aa41.54■■■■■ 4.24
TRAF4-203ENST00000394925 BAZ1AQ9NRL2 1556 aaPredicted RBP41.38■■■■■ 4.22
TRAF4-203ENST00000394925 NESP48681 1621 aa41.37■■■■■ 4.21
TRAF4-203ENST00000394925 BAZ1BQ9UIG0 1483 aaKnown RBP41.34■■■■■ 4.21
TRAF4-203ENST00000394925 PEG3Q9GZU2 1588 aa41.2■■■■■ 4.19
TRAF4-203ENST00000394925 MROH2BQ7Z745 1585 aa41.08■■■■■ 4.17
TRAF4-203ENST00000394925 LAMC3Q9Y6N6 1575 aa40.99■■■■■ 4.15
TRAF4-203ENST00000394925 THOC2Q8NI27 1593 aaKnown RBP40.95■■■■■ 4.15
TRAF4-203ENST00000394925 KIF21AQ7Z4S6 1674 aa40.82■■■■■ 4.12
TRAF4-203ENST00000394925 PDS5BQ9NTI5 1447 aa40.79■■■■■ 4.12
TRAF4-203ENST00000394925 CADPSQ9ULU8 1353 aa40.63■■■■■ 4.1
TRAF4-203ENST00000394925 WIZO95785 1651 aa40.59■■■■■ 4.09
TRAF4-203ENST00000394925 MRC2Q9UBG0 1479 aa40.45■■■■■ 4.07
TRAF4-203ENST00000394925 WDR62O43379 1518 aa40.34■■■■■ 4.05
TRAF4-203ENST00000394925 CEP164Q9UPV0 1460 aa40.24■■■■■ 4.03
TRAF4-203ENST00000394925 FANCD2Q9BXW9 1451 aa40.18■■■■■ 4.02
TRAF4-203ENST00000394925 RSF1Q96T23 1441 aaPredicted RBP40.13■■■■■ 4.01
TRAF4-203ENST00000394925 CFTRP13569 1480 aa40.1■■■■■ 4.01
TRAF4-203ENST00000394925 TRIM41Q8WV44 630 aa40.07■■■■■ 4.01
TRAF4-203ENST00000394925 TOP2AP11388 1531 aaKnown RBP40.02■■■■■ 4
TRAF4-203ENST00000394925 URB2Q14146 1524 aaKnown RBP39.86■■■■□ 3.97
TRAF4-203ENST00000394925 OSCARQ8IYS5 282 aa39.75■■■■□ 3.95
TRAF4-203ENST00000394925 PRDM2Q13029 1718 aa39.67■■■■□ 3.94
TRAF4-203ENST00000394925 CCDC88BA6NC98 1476 aa39.61■■■■□ 3.93
TRAF4-203ENST00000394925 IFT140Q96RY7 1462 aa39.43■■■■□ 3.9
TRAF4-203ENST00000394925 ZNF608Q9ULD9 1512 aaPredicted RBP39.43■■■■□ 3.9
TRAF4-203ENST00000394925 TOPBP1Q92547 1522 aa39.39■■■■□ 3.9
TRAF4-203ENST00000394925 ABCC8Q09428 1581 aa39.25■■■■□ 3.87
TRAF4-203ENST00000394925 RIMBP3CA6NJZ7 1639 aa39.25■■■■□ 3.87
TRAF4-203ENST00000394925 RIMBP3BA6NNM3 1639 aa39.25■■■■□ 3.87
TRAF4-203ENST00000394925 RIMBP3Q9UFD9 1639 aa39.25■■■■□ 3.87
TRAF4-203ENST00000394925 DNMBPQ6XZF7 1577 aa39.21■■■■□ 3.87
TRAF4-203ENST00000394925 EIF4G3O43432 1585 aaKnown RBP39.17■■■■□ 3.86
TRAF4-203ENST00000394925 ARHGEF11O15085 1522 aa39.09■■■■□ 3.85
TRAF4-203ENST00000394925 AQRO60306 1485 aaKnown RBP eCLIP39.05■■■■□ 3.843e-10■■■■□ 22
TRAF4-203ENST00000394925 TARBP1Q13395 1621 aaKnown RBP39.04■■■■□ 3.84
TRAF4-203ENST00000394925 POLA1P09884 1462 aaPredicted RBP38.96■■■■□ 3.83
TRAF4-203ENST00000394925 CHD1O14646 1710 aa38.95■■■■□ 3.83
TRAF4-203ENST00000394925 FBLN2P98095 1184 aa38.9■■■■□ 3.82
TRAF4-203ENST00000394925 CYB5RLQ6IPT4 315 aa38.87■■■■□ 3.81
TRAF4-203ENST00000394925 RAD54L2Q9Y4B4 1467 aa38.86■■■■□ 3.81
TRAF4-203ENST00000394925 SOGA1O94964 1423 aa38.8■■■■□ 3.8
TRAF4-203ENST00000394925 TDRD9Q8NDG6 1382 aaKnown RBP38.78■■■■□ 3.8
TRAF4-203ENST00000394925 FGD5Q6ZNL6 1462 aa38.69■■■■□ 3.78
TRAF4-203ENST00000394925 ARAP1Q96P48 1450 aa38.69■■■■□ 3.78
TRAF4-203ENST00000394925 SNAPC4Q5SXM2 1469 aa38.63■■■■□ 3.77
TRAF4-203ENST00000394925 CUX1P39880 1505 aa38.61■■■■□ 3.77
TRAF4-203ENST00000394925 WDR97A6NE52 1622 aa38.58■■■■□ 3.77
TRAF4-203ENST00000394925 TRHP20396 242 aaPredicted RBP38.55■■■■□ 3.76
TRAF4-203ENST00000394925 CHMP7Q8WUX9 453 aaPredicted RBP38.54■■■■□ 3.76
TRAF4-203ENST00000394925 MAGI1Q96QZ7 1491 aaPredicted RBP38.49■■■■□ 3.75
TRAF4-203ENST00000394925 GRIN2BQ13224 1484 aa38.47■■■■□ 3.75
TRAF4-203ENST00000394925 CLASP1Q7Z460 1538 aa38.47■■■■□ 3.75
TRAF4-203ENST00000394925 SYNJ1O43426 1573 aa38.44■■■■□ 3.74
TRAF4-203ENST00000394925 SYNJ2O15056 1496 aa38.37■■■■□ 3.73
TRAF4-203ENST00000394925 GAPVD1Q14C86 1478 aa38.32■■■■□ 3.72
TRAF4-203ENST00000394925 PBRM1Q86U86 1689 aa38.31■■■■□ 3.72
TRAF4-203ENST00000394925 SUPT5HO00267 1087 aaKnown RBP38.26■■■■□ 3.72
TRAF4-203ENST00000394925 ABCA10Q8WWZ4 1543 aa38.22■■■■□ 3.71
TRAF4-203ENST00000394925 ABCA5Q8WWZ7 1642 aa38.17■■■■□ 3.7
TRAF4-203ENST00000394925 WRNQ14191 1432 aaPredicted RBP eCLIP38.03■■■■□ 3.68
TRAF4-203ENST00000394925 GRIN2AQ12879 1464 aa37.98■■■■□ 3.67
TRAF4-203ENST00000394925 ADAMTS12P58397 1594 aa37.91■■■■□ 3.66
TRAF4-203ENST00000394925 TOP2BQ02880 1626 aa37.9■■■■□ 3.66
TRAF4-203ENST00000394925 BIVM-ERCC5R4GMW8 1640 aa37.9■■■■□ 3.66
TRAF4-203ENST00000394925 ERCC6L2Q5T890 1561 aa37.89■■■■□ 3.66
TRAF4-203ENST00000394925 CEP170Q5SW79 1584 aa37.86■■■■□ 3.65
TRAF4-203ENST00000394925 NUP160Q12769 1436 aa37.85■■■■□ 3.65
TRAF4-203ENST00000394925 FHAD1B1AJZ9 1412 aa37.81■■■■□ 3.64
TRAF4-203ENST00000394925 ERICH3Q5RHP9 1530 aa37.72■■■■□ 3.63
TRAF4-203ENST00000394925 SHROOM2Q13796 1616 aa37.71■■■■□ 3.63
TRAF4-203ENST00000394925 AEBP2Q6ZN18 517 aaPredicted RBP37.61■■■■□ 3.61
TRAF4-203ENST00000394925 PRG4Q92954 1404 aaPredicted RBP37.54■■■■□ 3.6
TRAF4-203ENST00000394925 JPH4Q96JJ6 628 aa37.52■■■■□ 3.6
TRAF4-203ENST00000394925 RUSC2Q8N2Y8 1516 aa37.38■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms