RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 NISCHQ9Y2I1 1504 aa28■■■□□ 2.07
CPNE1-222ENST00000473373 ABCC9O60706 1549 aa25.12■■□□□ 1.61
CPNE1-222ENST00000473373 CCDC180Q9P1Z9 1646 aa25.08■■□□□ 1.6
CPNE1-222ENST00000473373 DNAJC5BQ9UF47 199 aa23.87■■□□□ 1.41
CPNE1-222ENST00000473373 RB1CC1Q8TDY2 1594 aa23.69■■□□□ 1.38
CPNE1-222ENST00000473373 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
CPNE1-222ENST00000473373 NACADO15069 1562 aa23.57■■□□□ 1.36
CPNE1-222ENST00000473373 PABPN1Q86U42 306 aaKnown RBP eCLIP23.41■■□□□ 1.346e-8■□□□□ 8.9
CPNE1-222ENST00000473373 ZCCHC6Q5VYS8 1495 aaKnown RBP23.28■■□□□ 1.32
CPNE1-222ENST00000473373 MYO15BQ96JP2 1530 aa23.24■■□□□ 1.31
CPNE1-222ENST00000473373 UNC13AQ9UPW8 1703 aa23.22■■□□□ 1.31
CPNE1-222ENST00000473373 DCAF1Q9Y4B6 1507 aa23.1■■□□□ 1.29
CPNE1-222ENST00000473373 BICRAQ9NZM4 1560 aa23.03■■□□□ 1.28
CPNE1-222ENST00000473373 SCRIBQ14160 1630 aa22.92■■□□□ 1.26
CPNE1-222ENST00000473373 CECR2Q9BXF3 1484 aa22.62■■□□□ 1.21
CPNE1-222ENST00000473373 CC2D2AQ9P2K1 1620 aa22.61■■□□□ 1.21
CPNE1-222ENST00000473373 SHROOM4Q9ULL8 1493 aa22.6■■□□□ 1.21
CPNE1-222ENST00000473373 EIF4G1Q04637 1599 aaKnown RBP22.49■■□□□ 1.19
CPNE1-222ENST00000473373 DNAJC5Q9H3Z4 198 aa22.07■■□□□ 1.12
CPNE1-222ENST00000473373 SMARCA4P51532 1647 aa21.84■■□□□ 1.09
CPNE1-222ENST00000473373 BAZ1AQ9NRL2 1556 aaPredicted RBP21.78■■□□□ 1.08
CPNE1-222ENST00000473373 SMARCA2P51531 1590 aa21.73■■□□□ 1.07
CPNE1-222ENST00000473373 NCAPD3P42695 1498 aa21.69■■□□□ 1.06
CPNE1-222ENST00000473373 ERCC6Q03468 1493 aa21.68■■□□□ 1.06
CPNE1-222ENST00000473373 ATAD2BQ9ULI0 1458 aa21.68■■□□□ 1.06
CPNE1-222ENST00000473373 CUX2O14529 1486 aa21.66■■□□□ 1.06
CPNE1-222ENST00000473373 HMGXB3Q12766 1538 aa21.6■■□□□ 1.05
CPNE1-222ENST00000473373 MROH2BQ7Z745 1585 aa21.59■■□□□ 1.05
CPNE1-222ENST00000473373 BAZ1BQ9UIG0 1483 aaKnown RBP21.58■■□□□ 1.05
CPNE1-222ENST00000473373 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
CPNE1-222ENST00000473373 NESP48681 1621 aa21.5■■□□□ 1.03
CPNE1-222ENST00000473373 WIZO95785 1651 aa21.44■■□□□ 1.02
CPNE1-222ENST00000473373 THOC2Q8NI27 1593 aaKnown RBP21.23■□□□□ 0.99
CPNE1-222ENST00000473373 LAMC3Q9Y6N6 1575 aa21.23■□□□□ 0.99
CPNE1-222ENST00000473373 RSF1Q96T23 1441 aaPredicted RBP21.23■□□□□ 0.99
CPNE1-222ENST00000473373 AEBP2Q6ZN18 517 aaPredicted RBP21.19■□□□□ 0.98
CPNE1-222ENST00000473373 TOP2AP11388 1531 aaKnown RBP21.15■□□□□ 0.98
CPNE1-222ENST00000473373 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
CPNE1-222ENST00000473373 PDS5BQ9NTI5 1447 aa21.14■□□□□ 0.98
CPNE1-222ENST00000473373 TRIM41Q8WV44 630 aa21.06■□□□□ 0.96
CPNE1-222ENST00000473373 CADPSQ9ULU8 1353 aa21.05■□□□□ 0.96
CPNE1-222ENST00000473373 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
CPNE1-222ENST00000473373 PRDM2Q13029 1718 aa20.95■□□□□ 0.94
CPNE1-222ENST00000473373 CEP164Q9UPV0 1460 aa20.91■□□□□ 0.94
CPNE1-222ENST00000473373 WDR62O43379 1518 aa20.89■□□□□ 0.94
CPNE1-222ENST00000473373 CFTRP13569 1480 aa20.88■□□□□ 0.93
CPNE1-222ENST00000473373 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
CPNE1-222ENST00000473373 CCDC88BA6NC98 1476 aa20.87■□□□□ 0.93
CPNE1-222ENST00000473373 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
CPNE1-222ENST00000473373 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
CPNE1-222ENST00000473373 OSCARQ8IYS5 282 aa20.74■□□□□ 0.91
CPNE1-222ENST00000473373 URB2Q14146 1524 aaKnown RBP20.65■□□□□ 0.9
CPNE1-222ENST00000473373 ABCC8Q09428 1581 aa20.51■□□□□ 0.87
CPNE1-222ENST00000473373 TOPBP1Q92547 1522 aa20.51■□□□□ 0.87
CPNE1-222ENST00000473373 DNMBPQ6XZF7 1577 aa20.51■□□□□ 0.87
CPNE1-222ENST00000473373 ZNF608Q9ULD9 1512 aaPredicted RBP20.47■□□□□ 0.87
CPNE1-222ENST00000473373 RIMBP3CA6NJZ7 1639 aa20.43■□□□□ 0.86
CPNE1-222ENST00000473373 RIMBP3BA6NNM3 1639 aa20.43■□□□□ 0.86
CPNE1-222ENST00000473373 RIMBP3Q9UFD9 1639 aa20.43■□□□□ 0.86
CPNE1-222ENST00000473373 IFT140Q96RY7 1462 aa20.43■□□□□ 0.86
CPNE1-222ENST00000473373 ARHGEF11O15085 1522 aa20.33■□□□□ 0.85
CPNE1-222ENST00000473373 EIF4G3O43432 1585 aaKnown RBP20.33■□□□□ 0.84
CPNE1-222ENST00000473373 POLA1P09884 1462 aaPredicted RBP20.31■□□□□ 0.84
CPNE1-222ENST00000473373 CYB5RLQ6IPT4 315 aa20.31■□□□□ 0.84
CPNE1-222ENST00000473373 TARBP1Q13395 1621 aaKnown RBP20.29■□□□□ 0.84
CPNE1-222ENST00000473373 CUX1P39880 1505 aa20.27■□□□□ 0.84
CPNE1-222ENST00000473373 AQRO60306 1485 aaKnown RBP eCLIP20.27■□□□□ 0.844e-7■■■■■ 34.6
CPNE1-222ENST00000473373 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
CPNE1-222ENST00000473373 FBLN2P98095 1184 aa20.26■□□□□ 0.83
CPNE1-222ENST00000473373 SOGA1O94964 1423 aa20.25■□□□□ 0.83
CPNE1-222ENST00000473373 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
CPNE1-222ENST00000473373 TRHP20396 242 aaPredicted RBP20.2■□□□□ 0.82
CPNE1-222ENST00000473373 CHD1O14646 1710 aa20.19■□□□□ 0.82
CPNE1-222ENST00000473373 WDR97A6NE52 1622 aa20.14■□□□□ 0.81
CPNE1-222ENST00000473373 TDRD9Q8NDG6 1382 aaKnown RBP20.14■□□□□ 0.81
CPNE1-222ENST00000473373 ARAP1Q96P48 1450 aa20.12■□□□□ 0.81
CPNE1-222ENST00000473373 PBRM1Q86U86 1689 aa20.12■□□□□ 0.81
CPNE1-222ENST00000473373 BIVM-ERCC5R4GMW8 1640 aa20.12■□□□□ 0.81
CPNE1-222ENST00000473373 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
CPNE1-222ENST00000473373 TOP2BQ02880 1626 aa20.09■□□□□ 0.81
CPNE1-222ENST00000473373 SYNJ1O43426 1573 aa20.08■□□□□ 0.8
CPNE1-222ENST00000473373 SNAPC4Q5SXM2 1469 aa20.05■□□□□ 0.8
CPNE1-222ENST00000473373 GRIN2BQ13224 1484 aa20.04■□□□□ 0.8
CPNE1-222ENST00000473373 CHMP7Q8WUX9 453 aaPredicted RBP20.02■□□□□ 0.8
CPNE1-222ENST00000473373 GAPVD1Q14C86 1478 aa20.02■□□□□ 0.8
CPNE1-222ENST00000473373 ABCA10Q8WWZ4 1543 aa20.02■□□□□ 0.79
CPNE1-222ENST00000473373 MAGI1Q96QZ7 1491 aaPredicted RBP19.99■□□□□ 0.79
CPNE1-222ENST00000473373 ABCA5Q8WWZ7 1642 aa19.99■□□□□ 0.79
CPNE1-222ENST00000473373 CLASP1Q7Z460 1538 aa19.93■□□□□ 0.78
CPNE1-222ENST00000473373 SYNJ2O15056 1496 aa19.92■□□□□ 0.78
CPNE1-222ENST00000473373 ADAMTS12P58397 1594 aa19.83■□□□□ 0.77
CPNE1-222ENST00000473373 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
CPNE1-222ENST00000473373 GRIN2AQ12879 1464 aa19.77■□□□□ 0.76
CPNE1-222ENST00000473373 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
CPNE1-222ENST00000473373 KIF27Q86VH2 1401 aa19.72■□□□□ 0.75
CPNE1-222ENST00000473373 CEP170Q5SW79 1584 aa19.69■□□□□ 0.74
CPNE1-222ENST00000473373 CUL7Q14999 1698 aa19.68■□□□□ 0.74
CPNE1-222ENST00000473373 ERCC6L2Q5T890 1561 aa19.67■□□□□ 0.74
CPNE1-222ENST00000473373 NUP160Q12769 1436 aa19.62■□□□□ 0.73
CPNE1-222ENST00000473373 SHROOM2Q13796 1616 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms