RNA–Protein interactions for RNA: ENST00000483495.5

CPNE1-225, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,853 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-225ENST00000483495 NISCHQ9Y2I1 1504 aa29.44■■■□□ 2.3
CPNE1-225ENST00000483495 CCDC180Q9P1Z9 1646 aa25.51■■□□□ 1.67
CPNE1-225ENST00000483495 ZCCHC6Q5VYS8 1495 aaKnown RBP24.8■■□□□ 1.56
CPNE1-225ENST00000483495 DCAF1Q9Y4B6 1507 aa24.37■■□□□ 1.49
CPNE1-225ENST00000483495 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
CPNE1-225ENST00000483495 DCAF8L2P0C7V8 631 aa24.14■■□□□ 1.45
CPNE1-225ENST00000483495 MYO15BQ96JP2 1530 aa23.99■■□□□ 1.43
CPNE1-225ENST00000483495 ABCC9O60706 1549 aa23.86■■□□□ 1.41
CPNE1-225ENST00000483495 NACADO15069 1562 aa23.71■■□□□ 1.39
CPNE1-225ENST00000483495 SCRIBQ14160 1630 aa23.48■■□□□ 1.35
CPNE1-225ENST00000483495 RB1CC1Q8TDY2 1594 aa23.42■■□□□ 1.34
CPNE1-225ENST00000483495 SUPT5HO00267 1087 aaKnown RBP23.38■■□□□ 1.33
CPNE1-225ENST00000483495 RSF1Q96T23 1441 aaPredicted RBP22.96■■□□□ 1.27
CPNE1-225ENST00000483495 UNC13AQ9UPW8 1703 aa22.93■■□□□ 1.26
CPNE1-225ENST00000483495 CECR2Q9BXF3 1484 aa22.85■■□□□ 1.25
CPNE1-225ENST00000483495 MROH2BQ7Z745 1585 aa22.75■■□□□ 1.23
CPNE1-225ENST00000483495 BICRAQ9NZM4 1560 aa22.74■■□□□ 1.23
CPNE1-225ENST00000483495 BAZ1AQ9NRL2 1556 aaPredicted RBP22.7■■□□□ 1.22
CPNE1-225ENST00000483495 CHIC1Q5VXU3 224 aa22.58■■□□□ 1.21
CPNE1-225ENST00000483495 PABPN1Q86U42 306 aaKnown RBP eCLIP22.56■■□□□ 1.21e-6■■□□□ 11.6
CPNE1-225ENST00000483495 SMARCA4P51532 1647 aa22.55■■□□□ 1.2
CPNE1-225ENST00000483495 WIZO95785 1651 aa22.55■■□□□ 1.2
CPNE1-225ENST00000483495 TOP2AP11388 1531 aaKnown RBP22.35■■□□□ 1.17
CPNE1-225ENST00000483495 PEG3Q9GZU2 1588 aa22.31■■□□□ 1.16
CPNE1-225ENST00000483495 SMARCA2P51531 1590 aa22.15■■□□□ 1.14
CPNE1-225ENST00000483495 CCDC88BA6NC98 1476 aa22.13■■□□□ 1.13
CPNE1-225ENST00000483495 ATAD2BQ9ULI0 1458 aa22.13■■□□□ 1.13
CPNE1-225ENST00000483495 EIF4G1Q04637 1599 aaKnown RBP22.11■■□□□ 1.13
CPNE1-225ENST00000483495 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
CPNE1-225ENST00000483495 TRIM41Q8WV44 630 aa21.98■■□□□ 1.11
CPNE1-225ENST00000483495 NCAPD3P42695 1498 aa21.91■■□□□ 1.1
CPNE1-225ENST00000483495 HMGXB3Q12766 1538 aa21.89■■□□□ 1.09
CPNE1-225ENST00000483495 ABCC8Q09428 1581 aa21.73■■□□□ 1.07
CPNE1-225ENST00000483495 LOC105371045A0A1W2PR82 267 aa21.71■■□□□ 1.07
CPNE1-225ENST00000483495 CC2D2AQ9P2K1 1620 aa21.6■■□□□ 1.05
CPNE1-225ENST00000483495 WRNQ14191 1432 aaPredicted RBP eCLIP21.58■■□□□ 1.05
CPNE1-225ENST00000483495 FAM9AQ8IZU1 332 aaPredicted RBP21.56■■□□□ 1.04
CPNE1-225ENST00000483495 CFTRP13569 1480 aa21.5■■□□□ 1.03
CPNE1-225ENST00000483495 SYNJ1O43426 1573 aa21.47■■□□□ 1.03
CPNE1-225ENST00000483495 EEA1Q15075 1411 aa21.44■■□□□ 1.02
CPNE1-225ENST00000483495 SOGA1O94964 1423 aa21.4■■□□□ 1.02
CPNE1-225ENST00000483495 TOP2BQ02880 1626 aa21.37■■□□□ 1.01
CPNE1-225ENST00000483495 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
CPNE1-225ENST00000483495 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
CPNE1-225ENST00000483495 PRDM2Q13029 1718 aa21.33■■□□□ 1.01
CPNE1-225ENST00000483495 RUSC2Q8N2Y8 1516 aa21.3■■□□□ 1
CPNE1-225ENST00000483495 CSRNP3Q8WYN3 585 aa21.28■■□□□ 1
CPNE1-225ENST00000483495 CUX1P39880 1505 aa21.25■□□□□ 0.99
CPNE1-225ENST00000483495 EHMT2Q96KQ7 1210 aa21.21■□□□□ 0.99
CPNE1-225ENST00000483495 TNIKQ9UKE5 1360 aa21.14■□□□□ 0.98
CPNE1-225ENST00000483495 GOLGA3Q08378 1498 aa21.13■□□□□ 0.97
CPNE1-225ENST00000483495 KIF21BO75037 1637 aa21.12■□□□□ 0.97
CPNE1-225ENST00000483495 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
CPNE1-225ENST00000483495 FANCD2Q9BXW9 1451 aa21.1■□□□□ 0.97
CPNE1-225ENST00000483495 LAMC3Q9Y6N6 1575 aa21.08■□□□□ 0.97
CPNE1-225ENST00000483495 NESP48681 1621 aa21.05■□□□□ 0.96
CPNE1-225ENST00000483495 CEP162Q5TB80 1403 aa21.03■□□□□ 0.96
CPNE1-225ENST00000483495 KIF27Q86VH2 1401 aa21.01■□□□□ 0.95
CPNE1-225ENST00000483495 DNAJC5BQ9UF47 199 aa21.01■□□□□ 0.95
CPNE1-225ENST00000483495 PCGF6Q9BYE7 350 aa20.99■□□□□ 0.95
CPNE1-225ENST00000483495 UBTFP17480 764 aaKnown RBP20.98■□□□□ 0.95
CPNE1-225ENST00000483495 PRXQ9BXM0 1461 aa20.97■□□□□ 0.95
CPNE1-225ENST00000483495 FGD5Q6ZNL6 1462 aa20.97■□□□□ 0.95
CPNE1-225ENST00000483495 DNMBPQ6XZF7 1577 aa20.96■□□□□ 0.95
CPNE1-225ENST00000483495 RAPGEF2Q9Y4G8 1499 aa20.95■□□□□ 0.95
CPNE1-225ENST00000483495 TRIM26Q12899 539 aaPredicted RBP20.95■□□□□ 0.94
CPNE1-225ENST00000483495 ERICH3Q5RHP9 1530 aa20.94■□□□□ 0.94
CPNE1-225ENST00000483495 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
CPNE1-225ENST00000483495 TOPBP1Q92547 1522 aa20.91■□□□□ 0.94
CPNE1-225ENST00000483495 CUX2O14529 1486 aa20.88■□□□□ 0.93
CPNE1-225ENST00000483495 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
CPNE1-225ENST00000483495 URB2Q14146 1524 aaKnown RBP20.83■□□□□ 0.93
CPNE1-225ENST00000483495 IGF1RP08069 1367 aa20.82■□□□□ 0.92
CPNE1-225ENST00000483495 ABCA10Q8WWZ4 1543 aa20.81■□□□□ 0.92
CPNE1-225ENST00000483495 CLIP1P30622 1438 aa20.8■□□□□ 0.92
CPNE1-225ENST00000483495 KIF21AQ7Z4S6 1674 aa20.76■□□□□ 0.91
CPNE1-225ENST00000483495 RAD54L2Q9Y4B4 1467 aa20.76■□□□□ 0.91
CPNE1-225ENST00000483495 CARMIL1Q5VZK9 1371 aa20.7■□□□□ 0.9
CPNE1-225ENST00000483495 WDR97A6NE52 1622 aa20.69■□□□□ 0.9
CPNE1-225ENST00000483495 VPS8Q8N3P4 1428 aa20.67■□□□□ 0.9
CPNE1-225ENST00000483495 HRCP23327 699 aa20.65■□□□□ 0.9
CPNE1-225ENST00000483495 MRC2Q9UBG0 1479 aa20.63■□□□□ 0.89
CPNE1-225ENST00000483495 PPARGC1BQ86YN6 1023 aaKnown RBP20.62■□□□□ 0.89
CPNE1-225ENST00000483495 ABCA5Q8WWZ7 1642 aa20.6■□□□□ 0.89
CPNE1-225ENST00000483495 CUL7Q14999 1698 aa20.59■□□□□ 0.89
CPNE1-225ENST00000483495 ARAP1Q96P48 1450 aa20.58■□□□□ 0.88
CPNE1-225ENST00000483495 TARBP1Q13395 1621 aaKnown RBP20.57■□□□□ 0.88
CPNE1-225ENST00000483495 GAPVD1Q14C86 1478 aa20.54■□□□□ 0.88
CPNE1-225ENST00000483495 TDRD9Q8NDG6 1382 aaKnown RBP20.53■□□□□ 0.88
CPNE1-225ENST00000483495 ARHGAP35Q9NRY4 1499 aa20.53■□□□□ 0.88
CPNE1-225ENST00000483495 WDR62O43379 1518 aa20.52■□□□□ 0.88
CPNE1-225ENST00000483495 RANGAP1P46060 587 aaPredicted RBP20.52■□□□□ 0.88
CPNE1-225ENST00000483495 IFT140Q96RY7 1462 aa20.43■□□□□ 0.86
CPNE1-225ENST00000483495 ERCC6Q03468 1493 aa20.41■□□□□ 0.86
CPNE1-225ENST00000483495 APLP2Q06481 763 aa20.41■□□□□ 0.86
CPNE1-225ENST00000483495 THOC2Q8NI27 1593 aaKnown RBP20.38■□□□□ 0.85
CPNE1-225ENST00000483495 TTBK1Q5TCY1 1321 aaPredicted RBP20.38■□□□□ 0.85
CPNE1-225ENST00000483495 CTTNBP2Q8WZ74 1663 aa20.37■□□□□ 0.85
CPNE1-225ENST00000483495 PBRM1Q86U86 1689 aa20.36■□□□□ 0.85
CPNE1-225ENST00000483495 AQRO60306 1485 aaKnown RBP eCLIP20.36■□□□□ 0.852e-7■■■■■ 27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms