RNA–Protein interactions for RNA: ENST00000461195.5

TRAF4-207, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 787 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-207ENST00000461195 NISCHQ9Y2I1 1504 aa55.04■■■■■ 6.4
TRAF4-207ENST00000461195 CCDC180Q9P1Z9 1646 aa49.07■■■■■ 5.45
TRAF4-207ENST00000461195 ABCC9O60706 1549 aa48.25■■■■■ 5.31
TRAF4-207ENST00000461195 RB1CC1Q8TDY2 1594 aa46.3■■■■■ 5
TRAF4-207ENST00000461195 NACADO15069 1562 aa46.18■■■■■ 4.98
TRAF4-207ENST00000461195 DCAF8L2P0C7V8 631 aa46.08■■■■■ 4.97
TRAF4-207ENST00000461195 MYO15BQ96JP2 1530 aa45.82■■■■■ 4.92
TRAF4-207ENST00000461195 ZCCHC6Q5VYS8 1495 aaKnown RBP45.79■■■■■ 4.92
TRAF4-207ENST00000461195 DCAF1Q9Y4B6 1507 aa45.53■■■■■ 4.88
TRAF4-207ENST00000461195 DNAJC5BQ9UF47 199 aa45.52■■■■■ 4.88
TRAF4-207ENST00000461195 UNC13AQ9UPW8 1703 aa45.26■■■■■ 4.84
TRAF4-207ENST00000461195 PABPN1Q86U42 306 aaKnown RBP eCLIP45■■■■■ 4.79
TRAF4-207ENST00000461195 BICRAQ9NZM4 1560 aa44.89■■■■■ 4.78
TRAF4-207ENST00000461195 SCRIBQ14160 1630 aa44.74■■■■■ 4.75
TRAF4-207ENST00000461195 SHROOM4Q9ULL8 1493 aa44.4■■■■■ 4.7
TRAF4-207ENST00000461195 EIF4G1Q04637 1599 aaKnown RBP43.73■■■■■ 4.59
TRAF4-207ENST00000461195 CC2D2AQ9P2K1 1620 aa43.62■■■■■ 4.57
TRAF4-207ENST00000461195 CECR2Q9BXF3 1484 aa43.47■■■■■ 4.55
TRAF4-207ENST00000461195 SMARCA4P51532 1647 aa42.77■■■■■ 4.44
TRAF4-207ENST00000461195 BAZ1AQ9NRL2 1556 aaPredicted RBP42.69■■■■■ 4.42
TRAF4-207ENST00000461195 NCAPD3P42695 1498 aa42.6■■■■■ 4.41
TRAF4-207ENST00000461195 ATAD2BQ9ULI0 1458 aa42.59■■■■■ 4.41
TRAF4-207ENST00000461195 SMARCA2P51531 1590 aa42.54■■■■■ 4.4
TRAF4-207ENST00000461195 MROH2BQ7Z745 1585 aa42.4■■■■■ 4.38
TRAF4-207ENST00000461195 HMGXB3Q12766 1538 aa42.38■■■■■ 4.37
TRAF4-207ENST00000461195 PEG3Q9GZU2 1588 aa42.35■■■■■ 4.37
TRAF4-207ENST00000461195 BAZ1BQ9UIG0 1483 aaKnown RBP42.23■■■■■ 4.35
TRAF4-207ENST00000461195 DNAJC5Q9H3Z4 198 aa41.96■■■■■ 4.31
TRAF4-207ENST00000461195 WIZO95785 1651 aa41.96■■■■■ 4.31
TRAF4-207ENST00000461195 RSF1Q96T23 1441 aaPredicted RBP41.83■■■■■ 4.29
TRAF4-207ENST00000461195 ERCC6Q03468 1493 aa41.67■■■■■ 4.26
TRAF4-207ENST00000461195 NESP48681 1621 aa41.65■■■■■ 4.26
TRAF4-207ENST00000461195 CUX2O14529 1486 aa41.64■■■■■ 4.26
TRAF4-207ENST00000461195 LAMC3Q9Y6N6 1575 aa41.54■■■■■ 4.24
TRAF4-207ENST00000461195 TOP2AP11388 1531 aaKnown RBP41.49■■■■■ 4.23
TRAF4-207ENST00000461195 CADPSQ9ULU8 1353 aa41.35■■■■■ 4.21
TRAF4-207ENST00000461195 PDS5BQ9NTI5 1447 aa41.26■■■■■ 4.19
TRAF4-207ENST00000461195 KIF21AQ7Z4S6 1674 aa41.18■■■■■ 4.18
TRAF4-207ENST00000461195 THOC2Q8NI27 1593 aaKnown RBP41.08■■■■■ 4.17
TRAF4-207ENST00000461195 CFTRP13569 1480 aa41.05■■■■■ 4.16
TRAF4-207ENST00000461195 CCDC88BA6NC98 1476 aa41■■■■■ 4.15
TRAF4-207ENST00000461195 FANCD2Q9BXW9 1451 aa40.88■■■■■ 4.13
TRAF4-207ENST00000461195 CEP164Q9UPV0 1460 aa40.86■■■■■ 4.13
TRAF4-207ENST00000461195 MRC2Q9UBG0 1479 aa40.84■■■■■ 4.13
TRAF4-207ENST00000461195 PRDM2Q13029 1718 aa40.78■■■■■ 4.12
TRAF4-207ENST00000461195 WDR62O43379 1518 aa40.72■■■■■ 4.11
TRAF4-207ENST00000461195 SUPT5HO00267 1087 aaKnown RBP40.59■■■■■ 4.09
TRAF4-207ENST00000461195 URB2Q14146 1524 aaKnown RBP40.47■■■■■ 4.07
TRAF4-207ENST00000461195 ABCC8Q09428 1581 aa40.2■■■■■ 4.03
TRAF4-207ENST00000461195 TOPBP1Q92547 1522 aa40.2■■■■■ 4.03
TRAF4-207ENST00000461195 DNMBPQ6XZF7 1577 aa40.14■■■■■ 4.02
TRAF4-207ENST00000461195 TRIM41Q8WV44 630 aa40.07■■■■■ 4.01
TRAF4-207ENST00000461195 IFT140Q96RY7 1462 aa40■■■■□ 3.99
TRAF4-207ENST00000461195 ZNF608Q9ULD9 1512 aaPredicted RBP39.84■■■■□ 3.97
TRAF4-207ENST00000461195 POLA1P09884 1462 aaPredicted RBP39.83■■■■□ 3.97
TRAF4-207ENST00000461195 CUX1P39880 1505 aa39.81■■■■□ 3.96
TRAF4-207ENST00000461195 TARBP1Q13395 1621 aaKnown RBP39.79■■■■□ 3.96
TRAF4-207ENST00000461195 OSCARQ8IYS5 282 aa39.75■■■■□ 3.95
TRAF4-207ENST00000461195 FGD5Q6ZNL6 1462 aa39.71■■■■□ 3.95
TRAF4-207ENST00000461195 EIF4G3O43432 1585 aaKnown RBP39.69■■■■□ 3.94
TRAF4-207ENST00000461195 SOGA1O94964 1423 aa39.67■■■■□ 3.94
TRAF4-207ENST00000461195 RAD54L2Q9Y4B4 1467 aa39.66■■■■□ 3.94
TRAF4-207ENST00000461195 AQRO60306 1485 aaKnown RBP eCLIP39.58■■■■□ 3.933e-10■■■■□ 20.6
TRAF4-207ENST00000461195 WDR97A6NE52 1622 aa39.47■■■■□ 3.91
TRAF4-207ENST00000461195 TDRD9Q8NDG6 1382 aaKnown RBP39.47■■■■□ 3.91
TRAF4-207ENST00000461195 WRNQ14191 1432 aaPredicted RBP eCLIP39.46■■■■□ 3.91
TRAF4-207ENST00000461195 BIVM-ERCC5R4GMW8 1640 aa39.42■■■■□ 3.9
TRAF4-207ENST00000461195 TOP2BQ02880 1626 aa39.41■■■■□ 3.9
TRAF4-207ENST00000461195 SYNJ1O43426 1573 aa39.38■■■■□ 3.89
TRAF4-207ENST00000461195 ABCA10Q8WWZ4 1543 aa39.31■■■■□ 3.88
TRAF4-207ENST00000461195 CHD1O14646 1710 aa39.26■■■■□ 3.87
TRAF4-207ENST00000461195 RIMBP3CA6NJZ7 1639 aa39.25■■■■□ 3.87
TRAF4-207ENST00000461195 RIMBP3BA6NNM3 1639 aa39.25■■■■□ 3.87
TRAF4-207ENST00000461195 RIMBP3Q9UFD9 1639 aa39.25■■■■□ 3.87
TRAF4-207ENST00000461195 GRIN2BQ13224 1484 aa39.24■■■■□ 3.87
TRAF4-207ENST00000461195 GAPVD1Q14C86 1478 aa39.22■■■■□ 3.87
TRAF4-207ENST00000461195 SNAPC4Q5SXM2 1469 aa39.22■■■■□ 3.87
TRAF4-207ENST00000461195 ABCA5Q8WWZ7 1642 aa39.18■■■■□ 3.86
TRAF4-207ENST00000461195 PBRM1Q86U86 1689 aa39.18■■■■□ 3.86
TRAF4-207ENST00000461195 FBLN2P98095 1184 aa39.17■■■■□ 3.86
TRAF4-207ENST00000461195 MAGI1Q96QZ7 1491 aaPredicted RBP39.17■■■■□ 3.86
TRAF4-207ENST00000461195 ARHGEF11O15085 1522 aa39.09■■■■□ 3.85
TRAF4-207ENST00000461195 CHMP7Q8WUX9 453 aaPredicted RBP39.02■■■■□ 3.84
TRAF4-207ENST00000461195 SYNJ2O15056 1496 aa39.02■■■■□ 3.84
TRAF4-207ENST00000461195 CYB5RLQ6IPT4 315 aa38.87■■■■□ 3.81
TRAF4-207ENST00000461195 ERICH3Q5RHP9 1530 aa38.85■■■■□ 3.81
TRAF4-207ENST00000461195 ADAMTS12P58397 1594 aa38.83■■■■□ 3.81
TRAF4-207ENST00000461195 CLASP1Q7Z460 1538 aa38.8■■■■□ 3.8
TRAF4-207ENST00000461195 FHAD1B1AJZ9 1412 aa38.75■■■■□ 3.79
TRAF4-207ENST00000461195 GRIN2AQ12879 1464 aa38.73■■■■□ 3.79
TRAF4-207ENST00000461195 ARAP1Q96P48 1450 aa38.69■■■■□ 3.78
TRAF4-207ENST00000461195 KIF27Q86VH2 1401 aa38.66■■■■□ 3.78
TRAF4-207ENST00000461195 NUP160Q12769 1436 aa38.56■■■■□ 3.76
TRAF4-207ENST00000461195 TRHP20396 242 aaPredicted RBP38.55■■■■□ 3.76
TRAF4-207ENST00000461195 CEP170Q5SW79 1584 aa38.55■■■■□ 3.76
TRAF4-207ENST00000461195 IGF1RP08069 1367 aa38.52■■■■□ 3.76
TRAF4-207ENST00000461195 CUL7Q14999 1698 aa38.47■■■■□ 3.75
TRAF4-207ENST00000461195 SHROOM2Q13796 1616 aa38.32■■■■□ 3.73
TRAF4-207ENST00000461195 CARMIL1Q5VZK9 1371 aa38.3■■■■□ 3.72
TRAF4-207ENST00000461195 RUSC2Q8N2Y8 1516 aa38.26■■■■□ 3.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms