RNA–Protein interactions for RNA: ENST00000555737.5

RCCD1-204, Transcript of RCC1 domain containing 1, humanhuman

TSL 1 (best)

Gene RCCD1, Length 3,157 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCCD1-204ENST00000555737 NISCHQ9Y2I1 1504 aa34.35■■■■□ 3.09
RCCD1-204ENST00000555737 SHROOM4Q9ULL8 1493 aa31.05■■■□□ 2.56
RCCD1-204ENST00000555737 SUPT5HO00267 1087 aaKnown RBP30.74■■■□□ 2.51
RCCD1-204ENST00000555737 DCAF8L2P0C7V8 631 aa30.05■■■□□ 2.4
RCCD1-204ENST00000555737 PCGF6Q9BYE7 350 aa29.68■■■□□ 2.34
RCCD1-204ENST00000555737 CHIC1Q5VXU3 224 aa29.52■■■□□ 2.32
RCCD1-204ENST00000555737 HRCP23327 699 aa29.5■■■□□ 2.31
RCCD1-204ENST00000555737 PPARGC1BQ86YN6 1023 aaKnown RBP29.46■■■□□ 2.31
RCCD1-204ENST00000555737 MYO15BQ96JP2 1530 aa29.45■■■□□ 2.3
RCCD1-204ENST00000555737 LOC105371045A0A1W2PR82 267 aa29.18■■■□□ 2.26
RCCD1-204ENST00000555737 ZCCHC6Q5VYS8 1495 aaKnown RBP29.02■■■□□ 2.24
RCCD1-204ENST00000555737 EHMT2Q96KQ7 1210 aa28.86■■■□□ 2.21
RCCD1-204ENST00000555737 FAM9AQ8IZU1 332 aaPredicted RBP28.61■■■□□ 2.17
RCCD1-204ENST00000555737 TRIM26Q12899 539 aaPredicted RBP28.44■■■□□ 2.14
RCCD1-204ENST00000555737 CCDC180Q9P1Z9 1646 aa28.33■■■□□ 2.13
RCCD1-204ENST00000555737 DCAF1Q9Y4B6 1507 aa28.26■■■□□ 2.11
RCCD1-204ENST00000555737 TRIM41Q8WV44 630 aa28.22■■■□□ 2.11
RCCD1-204ENST00000555737 TTBK1Q5TCY1 1321 aaPredicted RBP27.96■■■□□ 2.07
RCCD1-204ENST00000555737 ZEB1P37275 1124 aaPredicted RBP27.82■■■□□ 2.04
RCCD1-204ENST00000555737 SCAF1Q9H7N4 1312 aaKnown RBP27.76■■■□□ 2.03
RCCD1-204ENST00000555737 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.74■■■□□ 2.03
RCCD1-204ENST00000555737 RSF1Q96T23 1441 aaPredicted RBP27.64■■■□□ 2.02
RCCD1-204ENST00000555737 SCRIBQ14160 1630 aa27.64■■■□□ 2.02
RCCD1-204ENST00000555737 CCER1Q8TC90 406 aaPredicted RBP27.6■■■□□ 2.01
RCCD1-204ENST00000555737 RB1CC1Q8TDY2 1594 aa27.47■■□□□ 1.99
RCCD1-204ENST00000555737 ABCC9O60706 1549 aa27.43■■□□□ 1.98
RCCD1-204ENST00000555737 NEUROD1Q13562 356 aa27.3■■□□□ 1.96
RCCD1-204ENST00000555737 PELP1Q8IZL8 1130 aaKnown RBP27.28■■□□□ 1.96
RCCD1-204ENST00000555737 CECR2Q9BXF3 1484 aa27.23■■□□□ 1.95
RCCD1-204ENST00000555737 DIEXFQ68CQ4 756 aaKnown RBP27.18■■□□□ 1.94
RCCD1-204ENST00000555737 YTHDC1Q96MU7 727 aaKnown RBP27.18■■□□□ 1.94
RCCD1-204ENST00000555737 GTF3C3Q9Y5Q9 886 aa27.16■■□□□ 1.94
RCCD1-204ENST00000555737 ACIN1Q9UKV3 1341 aaKnown RBP27.16■■□□□ 1.94
RCCD1-204ENST00000555737 UBTFP17480 764 aaKnown RBP27.01■■□□□ 1.91
RCCD1-204ENST00000555737 MROH2BQ7Z745 1585 aa27■■□□□ 1.91
RCCD1-204ENST00000555737 RANGAP1P46060 587 aaPredicted RBP26.99■■□□□ 1.91
RCCD1-204ENST00000555737 CENPBP07199 599 aaPredicted RBP26.97■■□□□ 1.91
RCCD1-204ENST00000555737 HNRNPUL2Q1KMD3 747 aaKnown RBP26.88■■□□□ 1.89
RCCD1-204ENST00000555737 WIZO95785 1651 aa26.86■■□□□ 1.89
RCCD1-204ENST00000555737 ABCC8Q09428 1581 aa26.73■■□□□ 1.87
RCCD1-204ENST00000555737 CCDC88BA6NC98 1476 aa26.68■■□□□ 1.86
RCCD1-204ENST00000555737 SOGA1O94964 1423 aa26.66■■□□□ 1.86
RCCD1-204ENST00000555737 ZNF316A6NFI3 1004 aaPredicted RBP26.66■■□□□ 1.86
RCCD1-204ENST00000555737 CEP162Q5TB80 1403 aa26.65■■□□□ 1.86
RCCD1-204ENST00000555737 MIER1Q8N108 512 aa26.59■■□□□ 1.85
RCCD1-204ENST00000555737 CSRNP3Q8WYN3 585 aa26.58■■□□□ 1.85
RCCD1-204ENST00000555737 RUSC2Q8N2Y8 1516 aa26.52■■□□□ 1.84
RCCD1-204ENST00000555737 PABPN1Q86U42 306 aaKnown RBP eCLIP26.5■■□□□ 1.83
RCCD1-204ENST00000555737 APLP2Q06481 763 aa26.43■■□□□ 1.82
RCCD1-204ENST00000555737 NACADO15069 1562 aa26.37■■□□□ 1.81
RCCD1-204ENST00000555737 TNIKQ9UKE5 1360 aa26.34■■□□□ 1.81
RCCD1-204ENST00000555737 BAZ1AQ9NRL2 1556 aaPredicted RBP26.32■■□□□ 1.8
RCCD1-204ENST00000555737 WRNQ14191 1432 aaPredicted RBP eCLIP26.27■■□□□ 1.8
RCCD1-204ENST00000555737 ITGAEP38570 1179 aa26.2■■□□□ 1.78
RCCD1-204ENST00000555737 MYT1Q01538 1121 aa26.15■■□□□ 1.78
RCCD1-204ENST00000555737 EIF4G1Q04637 1599 aaKnown RBP26.13■■□□□ 1.77
RCCD1-204ENST00000555737 TOP2AP11388 1531 aaKnown RBP26.11■■□□□ 1.77
RCCD1-204ENST00000555737 GOLGA3Q08378 1498 aa26.11■■□□□ 1.77
RCCD1-204ENST00000555737 SMARCA2P51531 1590 aa26.09■■□□□ 1.77
RCCD1-204ENST00000555737 CLIP1P30622 1438 aa26.08■■□□□ 1.77
RCCD1-204ENST00000555737 SMARCA4P51532 1647 aa25.99■■□□□ 1.75
RCCD1-204ENST00000555737 EEA1Q15075 1411 aa25.94■■□□□ 1.74
RCCD1-204ENST00000555737 BCANQ96GW7 911 aa25.91■■□□□ 1.74
RCCD1-204ENST00000555737 KANK4Q5T7N3 995 aaPredicted RBP25.87■■□□□ 1.73
RCCD1-204ENST00000555737 RAPGEF2Q9Y4G8 1499 aa25.85■■□□□ 1.73
RCCD1-204ENST00000555737 CEP164Q9UPV0 1460 aa25.85■■□□□ 1.73
RCCD1-204ENST00000555737 KCNH8Q96L42 1107 aa25.82■■□□□ 1.72
RCCD1-204ENST00000555737 VPS8Q8N3P4 1428 aa25.82■■□□□ 1.72
RCCD1-204ENST00000555737 SUPT16HQ9Y5B9 1047 aaKnown RBP25.81■■□□□ 1.72
RCCD1-204ENST00000555737 SYNJ1O43426 1573 aa25.74■■□□□ 1.71
RCCD1-204ENST00000555737 ATP1B4Q9UN42 357 aaPredicted RBP25.73■■□□□ 1.71
RCCD1-204ENST00000555737 HIRIP3Q9BW71 556 aaPredicted RBP25.7■■□□□ 1.71
RCCD1-204ENST00000555737 DHX57Q6P158 1386 aaKnown RBP25.67■■□□□ 1.7
RCCD1-204ENST00000555737 DDX10Q13206 875 aaKnown RBP25.59■■□□□ 1.69
RCCD1-204ENST00000555737 KIF21BO75037 1637 aa25.58■■□□□ 1.69
RCCD1-204ENST00000555737 P3H3Q8IVL6 736 aa25.54■■□□□ 1.68
RCCD1-204ENST00000555737 FAM50AQ14320 339 aaKnown RBP25.53■■□□□ 1.68
RCCD1-204ENST00000555737 TSHZ2Q9NRE2 1034 aa25.52■■□□□ 1.68
RCCD1-204ENST00000555737 SIN3AQ96ST3 1273 aa25.51■■□□□ 1.67
RCCD1-204ENST00000555737 FKBP8Q14318 412 aa25.5■■□□□ 1.67
RCCD1-204ENST00000555737 UNC13AQ9UPW8 1703 aa25.49■■□□□ 1.67
RCCD1-204ENST00000555737 BAZ1BQ9UIG0 1483 aaKnown RBP25.49■■□□□ 1.67
RCCD1-204ENST00000555737 TRIM52Q96A61 297 aa25.46■■□□□ 1.67
RCCD1-204ENST00000555737 ATAD2BQ9ULI0 1458 aa25.39■■□□□ 1.65
RCCD1-204ENST00000555737 ARAP1Q96P48 1450 aa25.37■■□□□ 1.65
RCCD1-204ENST00000555737 CCNB3Q8WWL7 1395 aa25.35■■□□□ 1.65
RCCD1-204ENST00000555737 CLSPNQ9HAW4 1339 aa25.35■■□□□ 1.65
RCCD1-204ENST00000555737 RAB3GAP2Q9H2M9 1393 aa25.31■■□□□ 1.64
RCCD1-204ENST00000555737 BICRAQ9NZM4 1560 aa25.29■■□□□ 1.64
RCCD1-204ENST00000555737 NEFLP07196 543 aa25.27■■□□□ 1.64
RCCD1-204ENST00000555737 IRX6P78412 446 aaPredicted RBP25.22■■□□□ 1.63
RCCD1-204ENST00000555737 ANP32EQ9BTT0 268 aa25.22■■□□□ 1.63
RCCD1-204ENST00000555737 PRXQ9BXM0 1461 aa25.16■■□□□ 1.62
RCCD1-204ENST00000555737 KIF27Q86VH2 1401 aa25.15■■□□□ 1.62
RCCD1-204ENST00000555737 ANP32CO43423 234 aa25.13■■□□□ 1.61
RCCD1-204ENST00000555737 RRBP1Q9P2E9 1410 aaKnown RBP25.13■■□□□ 1.61
RCCD1-204ENST00000555737 TOP2BQ02880 1626 aa25.1■■□□□ 1.61
RCCD1-204ENST00000555737 CNGB1Q14028 1251 aaPredicted RBP25.09■■□□□ 1.61
RCCD1-204ENST00000555737 ARHGAP35Q9NRY4 1499 aa25.09■■□□□ 1.61
RCCD1-204ENST00000555737 SETD5Q9C0A6 1442 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms