Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.589e-12■■■■□ 21.2
SUB1P53999 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.663e-8■■■■□ 21.2
SUB1P53999 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC10.68□□□□□ -0.73e-8■■■■□ 21.2
SUB1P53999 TBP-205ENST00000446829 892 ntTSL 59.62□□□□□ -0.873e-8■■■■□ 21.2
SUB1P53999 LAS1L-203ENST00000374811 2439 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.873e-8■■■■□ 21.2
SUB1P53999 TBP-208ENST00000636632 1955 ntTSL 59.57□□□□□ -0.883e-8■■■■□ 21.2
SUB1P53999 TBP-201ENST00000230354 1861 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.973e-8■■■■□ 21.2
SUB1P53999 USP19-204ENST00000398896 3907 ntAPPRIS ALT2 TSL 1 (best)8.76□□□□□ -1.019e-12■■■■□ 21.2
SUB1P53999 DDX47-202ENST00000358007 1817 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.053e-8■■■■□ 21.2
SUB1P53999 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.293e-8■■■■□ 21.2
SUB1P53999 DDX47-212ENST00000545038 2357 ntTSL 1 (best)6.24□□□□□ -1.413e-8■■■■□ 21.2
SUB1P53999 POT1-217ENST00000609106 2780 ntTSL 25.18□□□□□ -1.583e-8■■■■□ 21.2
SUB1P53999 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.14□□□□□ -1.593e-8■■■■□ 21.2
SUB1P53999 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC4.81□□□□□ -1.643e-8■■■■□ 21.2
SUB1P53999 POT1-205ENST00000436534 542 ntTSL 33.6□□□□□ -1.833e-8■■■■□ 21.2
SUB1P53999 POT1-204ENST00000430927 587 ntTSL 33.18□□□□□ -1.93e-8■■■■□ 21.2
SUB1P53999 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.933e-8■■■■□ 21.2
SUB1P53999 DDX47-207ENST00000542123 2689 ntTSL 1 (best)2.53□□□□□ -23e-8■■■■□ 21.2
SUB1P53999 RPL35A-209ENST00000496582 579 ntTSL 25.35□□□□□ -1.551e-8■■■■□ 21.2
SUB1P53999 PPT1-215ENST00000641471 2368 ntBASIC12.73□□□□□ -0.371e-9■■■■□ 21.2
SUB1P53999 PPT1-212ENST00000641236 2481 nt11.87□□□□□ -0.511e-9■■■■□ 21.2
SUB1P53999 PPT1-213ENST00000641319 2388 ntBASIC11.41□□□□□ -0.581e-9■■■■□ 21.2
SUB1P53999 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC11.31□□□□□ -0.61e-9■■■■□ 21.2
SUB1P53999 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.611e-9■■■■□ 21.2
SUB1P53999 PPT1-217ENST00000641691 2253 nt11.07□□□□□ -0.641e-9■■■■□ 21.2
SUB1P53999 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC10.91□□□□□ -0.661e-9■■■■□ 21.2
SUB1P53999 PPT1-210ENST00000530704 2340 ntTSL 1 (best)10.59□□□□□ -0.711e-9■■■■□ 21.2
SUB1P53999 PPT1-219ENST00000642050 4010 ntAPPRIS P2 BASIC9.96□□□□□ -0.811e-9■■■■□ 21.2
SUB1P53999 PPT1-211ENST00000641083 2353 nt9.35□□□□□ -0.911e-9■■■■□ 21.2
SUB1P53999 PPT1-209ENST00000530076 1872 ntTSL 2 BASIC8.01□□□□□ -1.131e-9■■■■□ 21.2
SUB1P53999 FUBP1-201ENST00000294623 2201 ntTSL 1 (best)11.5□□□□□ -0.571e-9■■■■□ 21.2
SUB1P53999 FUBP1-212ENST00000492405 668 ntTSL 310.43□□□□□ -0.741e-9■■■■□ 21.2
SUB1P53999 FUBP1-213ENST00000492724 583 ntTSL 310.43□□□□□ -0.741e-9■■■■□ 21.2
SUB1P53999 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.741e-9■■■■□ 21.2
SUB1P53999 FUBP1-202ENST00000370767 2524 ntTSL 5 BASIC9.66□□□□□ -0.861e-9■■■■□ 21.2
SUB1P53999 FUBP1-210ENST00000488814 612 ntTSL 35.27□□□□□ -1.571e-9■■■■□ 21.2
SUB1P53999 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)11.54□□□□□ -0.561e-39■■■■□ 21.2
SUB1P53999 RPL13A-212ENST00000488946 2312 ntTSL 211.31□□□□□ -0.61e-39■■■■□ 21.2
SUB1P53999 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC10.33□□□□□ -0.761e-39■■■■□ 21.2
SUB1P53999 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.831e-39■■■■□ 21.2
SUB1P53999 CORO1C-210ENST00000549384 891 ntTSL 513.79□□□□□ -0.22e-7■■■■□ 21.1
SUB1P53999 U2SURP-205ENST00000467348 1267 ntTSL 53.97□□□□□ -1.779e-7■■■■□ 21.1
SUB1P53999 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.829e-7■■■■□ 21.1
SUB1P53999 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC2.86□□□□□ -1.959e-7■■■■□ 21.1
SUB1P53999 U2SURP-203ENST00000463563 4364 ntTSL 22.3□□□□□ -2.049e-7■■■■□ 21.1
SUB1P53999 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.22□□□□□ -0.137e-7■■■■□ 21.1
SUB1P53999 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.64□□□□□ -0.397e-7■■■■□ 21.1
SUB1P53999 ARFGAP2-205ENST00000524782 2976 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -17e-7■■■■□ 21.1
SUB1P53999 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.613e-7■■■■□ 21.1
SUB1P53999 TMBIM6-227ENST00000552699 2964 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.823e-7■■■■□ 21.1
SUB1P53999 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.443e-7■■■■□ 21.1
SUB1P53999 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.563e-7■■■■□ 21.1
SUB1P53999 RPS3-220ENST00000534555 387 ntTSL 311.37□□□□□ -0.595e-49■■■■□ 21.1
SUB1P53999 RTN4-214ENST00000486085 955 ntTSL 33.72□□□□□ -1.814e-16■■■■□ 21
SUB1P53999 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.971e-7■■■■□ 21
SUB1P53999 ALDH18A1-201ENST00000371221 3337 ntAPPRIS ALT1 TSL 1 (best) BASIC8.55□□□□□ -1.041e-7■■■■□ 21
SUB1P53999 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.49■□□□□ 0.712e-6■■■■□ 21
SUB1P53999 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.282e-6■■■■□ 21
SUB1P53999 SRP68-212ENST00000602720 2037 ntTSL 2 BASIC9.97□□□□□ -0.812e-6■■■■□ 21
SUB1P53999 SRP68-203ENST00000542536 1714 ntTSL 29.51□□□□□ -0.892e-6■■■■□ 21
SUB1P53999 SRP68-207ENST00000588643 2040 ntTSL 28.9□□□□□ -0.992e-6■■■■□ 21
SUB1P53999 B2M-203ENST00000557901 407 ntTSL 1 (best)5.83□□□□□ -1.481e-9■■■■□ 21
SUB1P53999 MAGEC1-201ENST00000285879 4270 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.268e-7■■■■□ 21
SUB1P53999 CSNK2A1-202ENST00000349736 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.162e-6■■■■□ 21
SUB1P53999 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.272e-6■■■■□ 21
SUB1P53999 CSNK2A1-210ENST00000619801 655 ntTSL 36.9□□□□□ -1.32e-6■■■■□ 21
SUB1P53999 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.35□□□□□ -1.552e-6■■■■□ 21
SUB1P53999 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.391e-6■■■■□ 20.9
SUB1P53999 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.731e-8■■■■□ 20.9
SUB1P53999 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.931e-8■■■■□ 20.9
SUB1P53999 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.38■□□□□ 0.852e-11■■■■□ 20.9
SUB1P53999 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.3■□□□□ 0.522e-11■■■■□ 20.9
SUB1P53999 FHL2-211ENST00000530340 1876 ntTSL 1 (best)16.97■□□□□ 0.312e-11■■■■□ 20.9
SUB1P53999 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.372e-11■■■■□ 20.9
SUB1P53999 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.442e-11■■■■□ 20.9
SUB1P53999 FHL2-208ENST00000409807 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.762e-11■■■■□ 20.9
SUB1P53999 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.792e-11■■■■□ 20.9
SUB1P53999 FHL2-204ENST00000393352 1426 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.972e-11■■■■□ 20.9
SUB1P53999 FHL2-207ENST00000409177 4881 ntTSL 1 (best) BASIC8.48□□□□□ -1.052e-11■■■■□ 20.9
SUB1P53999 SND1-206ENST00000468166 552 ntTSL 46.36□□□□□ -1.393e-10■■■■□ 20.9
SUB1P53999 SND1-204ENST00000465900 630 ntTSL 44.81□□□□□ -1.643e-10■■■■□ 20.9
SUB1P53999 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC10.66□□□□□ -0.71e-8■■■■□ 20.9
SUB1P53999 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.91■□□□□ 0.624e-6■■■■□ 20.9
SUB1P53999 HADH-211ENST00000638559 1369 ntTSL 511.5□□□□□ -0.574e-6■■■■□ 20.9
SUB1P53999 HADH-216ENST00000639335 1327 ntTSL 510.89□□□□□ -0.674e-6■■■■□ 20.9
SUB1P53999 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.592e-6■■■■□ 20.9
SUB1P53999 RPL27A-201ENST00000314138 4916 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.713e-13■■■■□ 20.9
SUB1P53999 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.413e-6■■■■□ 20.9
SUB1P53999 DEK-204ENST00000505224 1372 ntTSL 211.12□□□□□ -0.635e-10■■■■□ 20.8
SUB1P53999 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.33e-17■■■■□ 20.8
SUB1P53999 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.574e-7■■■■□ 20.8
SUB1P53999 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.062e-6■■■■□ 20.8
SUB1P53999 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.132e-6■■■■□ 20.8
SUB1P53999 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.362e-6■■■■□ 20.8
SUB1P53999 SDCBP-212ENST00000523483 3589 ntTSL 2 BASIC7.38□□□□□ -1.232e-6■■■■□ 20.8
SUB1P53999 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.01□□□□□ -1.772e-6■■■■□ 20.8
SUB1P53999 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.4■□□□□ 0.382e-7■■■■□ 20.8
SUB1P53999 TBCD-221ENST00000576603 765 ntTSL 311.81□□□□□ -0.522e-6■■■■□ 20.7
SUB1P53999 SND1-213ENST00000486037 695 ntTSL 37.37□□□□□ -1.232e-6■■■■□ 20.7
SUB1P53999 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.082e-6■■■■□ 20.7
Retrieved 100 of 11,644 protein–RNA pairs in 174.7 ms