RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 NISCHQ9Y2I1 1504 aa39.03■■■■□ 3.84
SDCBP-204ENST00000447182 SHROOM4Q9ULL8 1493 aa33.18■■■□□ 2.9
SDCBP-204ENST00000447182 CCDC180Q9P1Z9 1646 aa33.16■■■□□ 2.9
SDCBP-204ENST00000447182 ZCCHC6Q5VYS8 1495 aaKnown RBP33.1■■■□□ 2.89
SDCBP-204ENST00000447182 SUPT5HO00267 1087 aaKnown RBP32.69■■■□□ 2.82
SDCBP-204ENST00000447182 DCAF1Q9Y4B6 1507 aa32.16■■■□□ 2.74
SDCBP-204ENST00000447182 CHIC1Q5VXU3 224 aa32.08■■■□□ 2.73
SDCBP-204ENST00000447182 MYO15BQ96JP2 1530 aa32■■■□□ 2.71
SDCBP-204ENST00000447182 DCAF8L2P0C7V8 631 aa31.93■■■□□ 2.7
SDCBP-204ENST00000447182 HRCP23327 699 aa31.6■■■□□ 2.65
SDCBP-204ENST00000447182 ABCC9O60706 1549 aa31.29■■■□□ 2.6
SDCBP-204ENST00000447182 PCGF6Q9BYE7 350 aa31.26■■■□□ 2.59
SDCBP-204ENST00000447182 LOC105371045A0A1W2PR82 267 aa31.01■■■□□ 2.56
SDCBP-204ENST00000447182 RSF1Q96T23 1441 aaPredicted RBP30.95■■■□□ 2.55
SDCBP-204ENST00000447182 SCRIBQ14160 1630 aa30.92■■■□□ 2.54
SDCBP-204ENST00000447182 TRIM26Q12899 539 aaPredicted RBP30.75■■■□□ 2.51
SDCBP-204ENST00000447182 RB1CC1Q8TDY2 1594 aa30.72■■■□□ 2.51
SDCBP-204ENST00000447182 PPARGC1BQ86YN6 1023 aaKnown RBP30.71■■■□□ 2.51
SDCBP-204ENST00000447182 NACADO15069 1562 aa30.55■■■□□ 2.48
SDCBP-204ENST00000447182 TRIM41Q8WV44 630 aa30.53■■■□□ 2.48
SDCBP-204ENST00000447182 CECR2Q9BXF3 1484 aa30.32■■■□□ 2.44
SDCBP-204ENST00000447182 MROH2BQ7Z745 1585 aa30.29■■■□□ 2.44
SDCBP-204ENST00000447182 ZEB1P37275 1124 aaPredicted RBP30.28■■■□□ 2.44
SDCBP-204ENST00000447182 FAM9AQ8IZU1 332 aaPredicted RBP30.14■■■□□ 2.42
SDCBP-204ENST00000447182 WIZO95785 1651 aa30.14■■■□□ 2.42
SDCBP-204ENST00000447182 BAZ1AQ9NRL2 1556 aaPredicted RBP30.08■■■□□ 2.41
SDCBP-204ENST00000447182 EIF4G1Q04637 1599 aaKnown RBP29.98■■■□□ 2.39
SDCBP-204ENST00000447182 TOP2AP11388 1531 aaKnown RBP29.76■■■□□ 2.35
SDCBP-204ENST00000447182 EHMT2Q96KQ7 1210 aa29.75■■■□□ 2.35
SDCBP-204ENST00000447182 SMARCA4P51532 1647 aa29.67■■■□□ 2.34
SDCBP-204ENST00000447182 SMARCA2P51531 1590 aa29.58■■■□□ 2.33
SDCBP-204ENST00000447182 CCDC88BA6NC98 1476 aa29.57■■■□□ 2.32
SDCBP-204ENST00000447182 WRNQ14191 1432 aaPredicted RBP eCLIP29.52■■■□□ 2.32
SDCBP-204ENST00000447182 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
SDCBP-204ENST00000447182 UNC13AQ9UPW8 1703 aa29.5■■■□□ 2.31
SDCBP-204ENST00000447182 EEA1Q15075 1411 aa29.38■■■□□ 2.29
SDCBP-204ENST00000447182 CEP162Q5TB80 1403 aa29.35■■■□□ 2.29
SDCBP-204ENST00000447182 TNIKQ9UKE5 1360 aa29.35■■■□□ 2.29
SDCBP-204ENST00000447182 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.32■■■□□ 2.28
SDCBP-204ENST00000447182 CCER1Q8TC90 406 aaPredicted RBP29.3■■■□□ 2.28
SDCBP-204ENST00000447182 SOGA1O94964 1423 aa29.3■■■□□ 2.28
SDCBP-204ENST00000447182 SCAF1Q9H7N4 1312 aaKnown RBP29.21■■■□□ 2.27
SDCBP-204ENST00000447182 CSRNP3Q8WYN3 585 aa29.2■■■□□ 2.26
SDCBP-204ENST00000447182 PEG3Q9GZU2 1588 aa29.18■■■□□ 2.26
SDCBP-204ENST00000447182 RUSC2Q8N2Y8 1516 aa29.13■■■□□ 2.25
SDCBP-204ENST00000447182 PELP1Q8IZL8 1130 aaKnown RBP29.12■■■□□ 2.25
SDCBP-204ENST00000447182 GOLGA3Q08378 1498 aa29.12■■■□□ 2.25
SDCBP-204ENST00000447182 BICRAQ9NZM4 1560 aa29.11■■■□□ 2.25
SDCBP-204ENST00000447182 UBTFP17480 764 aaKnown RBP29■■■□□ 2.23
SDCBP-204ENST00000447182 KIF21BO75037 1637 aa28.95■■■□□ 2.23
SDCBP-204ENST00000447182 CEP164Q9UPV0 1460 aa28.94■■■□□ 2.22
SDCBP-204ENST00000447182 DIEXFQ68CQ4 756 aaKnown RBP28.93■■■□□ 2.22
SDCBP-204ENST00000447182 ACIN1Q9UKV3 1341 aaKnown RBP28.91■■■□□ 2.22
SDCBP-204ENST00000447182 TTBK1Q5TCY1 1321 aaPredicted RBP28.91■■■□□ 2.22
SDCBP-204ENST00000447182 SYNJ1O43426 1573 aa28.9■■■□□ 2.22
SDCBP-204ENST00000447182 PABPN1Q86U42 306 aaKnown RBP eCLIP28.87■■■□□ 2.21
SDCBP-204ENST00000447182 ATAD2BQ9ULI0 1458 aa28.81■■■□□ 2.2
SDCBP-204ENST00000447182 BAZ1BQ9UIG0 1483 aaKnown RBP28.78■■■□□ 2.2
SDCBP-204ENST00000447182 NEUROD1Q13562 356 aa28.78■■■□□ 2.2
SDCBP-204ENST00000447182 CLIP1P30622 1438 aa28.75■■■□□ 2.19
SDCBP-204ENST00000447182 CENPBP07199 599 aaPredicted RBP28.72■■■□□ 2.19
SDCBP-204ENST00000447182 VPS8Q8N3P4 1428 aa28.7■■■□□ 2.19
SDCBP-204ENST00000447182 ZNF316A6NFI3 1004 aaPredicted RBP28.69■■■□□ 2.18
SDCBP-204ENST00000447182 RAPGEF2Q9Y4G8 1499 aa28.61■■■□□ 2.17
SDCBP-204ENST00000447182 TOP2BQ02880 1626 aa28.6■■■□□ 2.17
SDCBP-204ENST00000447182 BIVM-ERCC5R4GMW8 1640 aa28.52■■■□□ 2.16
SDCBP-204ENST00000447182 GTF3C3Q9Y5Q9 886 aa28.51■■■□□ 2.15
SDCBP-204ENST00000447182 HNRNPUL2Q1KMD3 747 aaKnown RBP28.49■■■□□ 2.15
SDCBP-204ENST00000447182 APLP2Q06481 763 aa28.47■■■□□ 2.15
SDCBP-204ENST00000447182 ERICH3Q5RHP9 1530 aa28.45■■■□□ 2.15
SDCBP-204ENST00000447182 PRXQ9BXM0 1461 aa28.39■■■□□ 2.13
SDCBP-204ENST00000447182 HMGXB3Q12766 1538 aa28.3■■■□□ 2.12
SDCBP-204ENST00000447182 CLSPNQ9HAW4 1339 aa28.3■■■□□ 2.12
SDCBP-204ENST00000447182 ARAP1Q96P48 1450 aa28.28■■■□□ 2.12
SDCBP-204ENST00000447182 NCAPD3P42695 1498 aa28.25■■■□□ 2.11
SDCBP-204ENST00000447182 MIER1Q8N108 512 aa28.24■■■□□ 2.11
SDCBP-204ENST00000447182 CUX1P39880 1505 aa28.2■■■□□ 2.1
SDCBP-204ENST00000447182 RANGAP1P46060 587 aaPredicted RBP28.17■■■□□ 2.1
SDCBP-204ENST00000447182 KIF27Q86VH2 1401 aa28.15■■■□□ 2.1
SDCBP-204ENST00000447182 DHX57Q6P158 1386 aaKnown RBP28.15■■■□□ 2.1
SDCBP-204ENST00000447182 RRBP1Q9P2E9 1410 aaKnown RBP28.12■■■□□ 2.09
SDCBP-204ENST00000447182 YTHDC1Q96MU7 727 aaKnown RBP28.1■■■□□ 2.09
SDCBP-204ENST00000447182 CFTRP13569 1480 aa28.08■■■□□ 2.09
SDCBP-204ENST00000447182 KANK4Q5T7N3 995 aaPredicted RBP28.06■■■□□ 2.08
SDCBP-204ENST00000447182 CUX2O14529 1486 aa28.05■■■□□ 2.08
SDCBP-204ENST00000447182 ARHGAP35Q9NRY4 1499 aa27.99■■■□□ 2.07
SDCBP-204ENST00000447182 PRDM2Q13029 1718 aa27.96■■■□□ 2.07
SDCBP-204ENST00000447182 CCNB3Q8WWL7 1395 aa27.91■■■□□ 2.06
SDCBP-204ENST00000447182 MAP3K1Q13233 1512 aa27.86■■■□□ 2.05
SDCBP-204ENST00000447182 IGF1RP08069 1367 aa27.8■■■□□ 2.04
SDCBP-204ENST00000447182 TIAM1Q13009 1591 aa27.77■■■□□ 2.04
SDCBP-204ENST00000447182 MYT1Q01538 1121 aa27.75■■■□□ 2.03
SDCBP-204ENST00000447182 CARMIL1Q5VZK9 1371 aa27.67■■■□□ 2.02
SDCBP-204ENST00000447182 CADPSQ9ULU8 1353 aa27.67■■■□□ 2.02
SDCBP-204ENST00000447182 RAB3GAP2Q9H2M9 1393 aa27.67■■■□□ 2.02
SDCBP-204ENST00000447182 MAPKBP1O60336 1514 aa27.66■■■□□ 2.02
SDCBP-204ENST00000447182 LRRC9Q6ZRR7 1453 aa27.64■■■□□ 2.02
SDCBP-204ENST00000447182 FGD5Q6ZNL6 1462 aa27.63■■■□□ 2.01
SDCBP-204ENST00000447182 FHAD1B1AJZ9 1412 aa27.59■■■□□ 2.01
SDCBP-204ENST00000447182 SETD5Q9C0A6 1442 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms