RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 NISCHQ9Y2I1 1504 aa40.35■■■■■ 4.05
SDCBP-201ENST00000260130 CCDC180Q9P1Z9 1646 aa35.75■■■■□ 3.31
SDCBP-201ENST00000260130 ABCC9O60706 1549 aa34.94■■■■□ 3.18
SDCBP-201ENST00000260130 DCAF8L2P0C7V8 631 aa33.75■■■□□ 2.99
SDCBP-201ENST00000260130 RB1CC1Q8TDY2 1594 aa33.64■■■□□ 2.98
SDCBP-201ENST00000260130 NACADO15069 1562 aa33.63■■■□□ 2.97
SDCBP-201ENST00000260130 ZCCHC6Q5VYS8 1495 aaKnown RBP33.62■■■□□ 2.97
SDCBP-201ENST00000260130 MYO15BQ96JP2 1530 aa33.48■■■□□ 2.95
SDCBP-201ENST00000260130 DCAF1Q9Y4B6 1507 aa33.38■■■□□ 2.93
SDCBP-201ENST00000260130 UNC13AQ9UPW8 1703 aa32.8■■■□□ 2.84
SDCBP-201ENST00000260130 PABPN1Q86U42 306 aaKnown RBP eCLIP32.72■■■□□ 2.83
SDCBP-201ENST00000260130 SCRIBQ14160 1630 aa32.66■■■□□ 2.82
SDCBP-201ENST00000260130 BICRAQ9NZM4 1560 aa32.61■■■□□ 2.81
SDCBP-201ENST00000260130 SHROOM4Q9ULL8 1493 aa32.28■■■□□ 2.76
SDCBP-201ENST00000260130 DNAJC5BQ9UF47 199 aa32.01■■■□□ 2.71
SDCBP-201ENST00000260130 EIF4G1Q04637 1599 aaKnown RBP31.74■■■□□ 2.67
SDCBP-201ENST00000260130 CC2D2AQ9P2K1 1620 aa31.58■■■□□ 2.65
SDCBP-201ENST00000260130 CECR2Q9BXF3 1484 aa31.44■■■□□ 2.62
SDCBP-201ENST00000260130 BAZ1AQ9NRL2 1556 aaPredicted RBP31.25■■■□□ 2.59
SDCBP-201ENST00000260130 SMARCA4P51532 1647 aa31.25■■■□□ 2.59
SDCBP-201ENST00000260130 MROH2BQ7Z745 1585 aa31.1■■■□□ 2.57
SDCBP-201ENST00000260130 ATAD2BQ9ULI0 1458 aa31.09■■■□□ 2.57
SDCBP-201ENST00000260130 NCAPD3P42695 1498 aa31.07■■■□□ 2.56
SDCBP-201ENST00000260130 SMARCA2P51531 1590 aa31.04■■■□□ 2.56
SDCBP-201ENST00000260130 PEG3Q9GZU2 1588 aa30.95■■■□□ 2.55
SDCBP-201ENST00000260130 HMGXB3Q12766 1538 aa30.88■■■□□ 2.53
SDCBP-201ENST00000260130 BAZ1BQ9UIG0 1483 aaKnown RBP30.83■■■□□ 2.53
SDCBP-201ENST00000260130 RSF1Q96T23 1441 aaPredicted RBP30.81■■■□□ 2.52
SDCBP-201ENST00000260130 WIZO95785 1651 aa30.74■■■□□ 2.51
SDCBP-201ENST00000260130 TOP2AP11388 1531 aaKnown RBP30.43■■■□□ 2.46
SDCBP-201ENST00000260130 NESP48681 1621 aa30.26■■■□□ 2.44
SDCBP-201ENST00000260130 LAMC3Q9Y6N6 1575 aa30.19■■■□□ 2.42
SDCBP-201ENST00000260130 CADPSQ9ULU8 1353 aa30.18■■■□□ 2.42
SDCBP-201ENST00000260130 SUPT5HO00267 1087 aaKnown RBP30.18■■■□□ 2.42
SDCBP-201ENST00000260130 CCDC88BA6NC98 1476 aa30.11■■■□□ 2.41
SDCBP-201ENST00000260130 ERCC6Q03468 1493 aa30.11■■■□□ 2.41
SDCBP-201ENST00000260130 PDS5BQ9NTI5 1447 aa30.03■■■□□ 2.4
SDCBP-201ENST00000260130 CFTRP13569 1480 aa30.01■■■□□ 2.39
SDCBP-201ENST00000260130 KIF21AQ7Z4S6 1674 aa29.85■■■□□ 2.37
SDCBP-201ENST00000260130 FANCD2Q9BXW9 1451 aa29.81■■■□□ 2.36
SDCBP-201ENST00000260130 CEP164Q9UPV0 1460 aa29.75■■■□□ 2.35
SDCBP-201ENST00000260130 THOC2Q8NI27 1593 aaKnown RBP29.73■■■□□ 2.35
SDCBP-201ENST00000260130 CUX2O14529 1486 aa29.73■■■□□ 2.35
SDCBP-201ENST00000260130 MRC2Q9UBG0 1479 aa29.68■■■□□ 2.34
SDCBP-201ENST00000260130 PRDM2Q13029 1718 aa29.67■■■□□ 2.34
SDCBP-201ENST00000260130 WDR62O43379 1518 aa29.56■■■□□ 2.32
SDCBP-201ENST00000260130 URB2Q14146 1524 aaKnown RBP29.49■■■□□ 2.31
SDCBP-201ENST00000260130 ABCC8Q09428 1581 aa29.36■■■□□ 2.29
SDCBP-201ENST00000260130 TOPBP1Q92547 1522 aa29.34■■■□□ 2.29
SDCBP-201ENST00000260130 DNMBPQ6XZF7 1577 aa29.29■■■□□ 2.28
SDCBP-201ENST00000260130 CUX1P39880 1505 aa29.16■■■□□ 2.26
SDCBP-201ENST00000260130 IFT140Q96RY7 1462 aa29.13■■■□□ 2.25
SDCBP-201ENST00000260130 POLA1P09884 1462 aaPredicted RBP29.1■■■□□ 2.25
SDCBP-201ENST00000260130 WRNQ14191 1432 aaPredicted RBP eCLIP29.05■■■□□ 2.24
SDCBP-201ENST00000260130 FGD5Q6ZNL6 1462 aa29.05■■■□□ 2.24
SDCBP-201ENST00000260130 SOGA1O94964 1423 aa29.02■■■□□ 2.24
SDCBP-201ENST00000260130 ZNF608Q9ULD9 1512 aaPredicted RBP28.99■■■□□ 2.23
SDCBP-201ENST00000260130 RAD54L2Q9Y4B4 1467 aa28.99■■■□□ 2.23
SDCBP-201ENST00000260130 TARBP1Q13395 1621 aaKnown RBP28.99■■■□□ 2.23
SDCBP-201ENST00000260130 TOP2BQ02880 1626 aa28.93■■■□□ 2.22
SDCBP-201ENST00000260130 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
SDCBP-201ENST00000260130 BIVM-ERCC5R4GMW8 1640 aa28.9■■■□□ 2.22
SDCBP-201ENST00000260130 AQRO60306 1485 aaKnown RBP eCLIP28.87■■■□□ 2.21
SDCBP-201ENST00000260130 TDRD9Q8NDG6 1382 aaKnown RBP28.85■■■□□ 2.21
SDCBP-201ENST00000260130 EIF4G3O43432 1585 aaKnown RBP28.84■■■□□ 2.21
SDCBP-201ENST00000260130 ABCA10Q8WWZ4 1543 aa28.77■■■□□ 2.2
SDCBP-201ENST00000260130 WDR97A6NE52 1622 aa28.75■■■□□ 2.19
SDCBP-201ENST00000260130 DNAJC5Q9H3Z4 198 aa28.74■■■□□ 2.19
SDCBP-201ENST00000260130 GAPVD1Q14C86 1478 aa28.67■■■□□ 2.18
SDCBP-201ENST00000260130 GRIN2BQ13224 1484 aa28.64■■■□□ 2.18
SDCBP-201ENST00000260130 ABCA5Q8WWZ7 1642 aa28.61■■■□□ 2.17
SDCBP-201ENST00000260130 OSCARQ8IYS5 282 aa28.59■■■□□ 2.17
SDCBP-201ENST00000260130 SNAPC4Q5SXM2 1469 aa28.57■■■□□ 2.16
SDCBP-201ENST00000260130 MAGI1Q96QZ7 1491 aaPredicted RBP28.54■■■□□ 2.16
SDCBP-201ENST00000260130 FBLN2P98095 1184 aa28.54■■■□□ 2.16
SDCBP-201ENST00000260130 PBRM1Q86U86 1689 aa28.51■■■□□ 2.16
SDCBP-201ENST00000260130 TRIM41Q8WV44 630 aa28.5■■■□□ 2.15
SDCBP-201ENST00000260130 CHMP7Q8WUX9 453 aaPredicted RBP28.47■■■□□ 2.15
SDCBP-201ENST00000260130 SYNJ2O15056 1496 aa28.44■■■□□ 2.14
SDCBP-201ENST00000260130 KIF27Q86VH2 1401 aa28.43■■■□□ 2.14
SDCBP-201ENST00000260130 ERICH3Q5RHP9 1530 aa28.43■■■□□ 2.14
SDCBP-201ENST00000260130 CHD1O14646 1710 aa28.42■■■□□ 2.14
SDCBP-201ENST00000260130 FHAD1B1AJZ9 1412 aa28.34■■■□□ 2.13
SDCBP-201ENST00000260130 IGF1RP08069 1367 aa28.33■■■□□ 2.13
SDCBP-201ENST00000260130 ADAMTS12P58397 1594 aa28.33■■■□□ 2.13
SDCBP-201ENST00000260130 GRIN2AQ12879 1464 aa28.26■■■□□ 2.12
SDCBP-201ENST00000260130 CHIC1Q5VXU3 224 aa28.23■■■□□ 2.11
SDCBP-201ENST00000260130 RUSC2Q8N2Y8 1516 aa28.22■■■□□ 2.11
SDCBP-201ENST00000260130 CLASP1Q7Z460 1538 aa28.16■■■□□ 2.1
SDCBP-201ENST00000260130 CUL7Q14999 1698 aa28.16■■■□□ 2.1
SDCBP-201ENST00000260130 CARMIL1Q5VZK9 1371 aa28.15■■■□□ 2.1
SDCBP-201ENST00000260130 NUP160Q12769 1436 aa28.13■■■□□ 2.09
SDCBP-201ENST00000260130 CEP170Q5SW79 1584 aa28.1■■■□□ 2.09
SDCBP-201ENST00000260130 ARHGEF11O15085 1522 aa28.06■■■□□ 2.08
SDCBP-201ENST00000260130 RIMBP3CA6NJZ7 1639 aa28.02■■■□□ 2.08
SDCBP-201ENST00000260130 RIMBP3BA6NNM3 1639 aa28.02■■■□□ 2.08
SDCBP-201ENST00000260130 RIMBP3Q9UFD9 1639 aa28.02■■■□□ 2.08
SDCBP-201ENST00000260130 RAPGEF2Q9Y4G8 1499 aa27.98■■■□□ 2.07
SDCBP-201ENST00000260130 CSRNP3Q8WYN3 585 aa27.96■■■□□ 2.07
SDCBP-201ENST00000260130 EEA1Q15075 1411 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms