RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 NISCHQ9Y2I1 1504 aa25.4■■□□□ 1.66
HMGCS1-201ENST00000325110 SHROOM4Q9ULL8 1493 aa22.7■■□□□ 1.22
HMGCS1-201ENST00000325110 SUPT5HO00267 1087 aaKnown RBP22.43■■□□□ 1.18
HMGCS1-201ENST00000325110 DCAF8L2P0C7V8 631 aa22.31■■□□□ 1.16
HMGCS1-201ENST00000325110 ZCCHC6Q5VYS8 1495 aaKnown RBP21.41■■□□□ 1.02
HMGCS1-201ENST00000325110 CHIC1Q5VXU3 224 aa21.39■■□□□ 1.02
HMGCS1-201ENST00000325110 PCGF6Q9BYE7 350 aa21.3■■□□□ 1
HMGCS1-201ENST00000325110 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.98
HMGCS1-201ENST00000325110 CCDC180Q9P1Z9 1646 aa21.12■□□□□ 0.97
HMGCS1-201ENST00000325110 LOC105371045A0A1W2PR82 267 aa21.07■□□□□ 0.96
HMGCS1-201ENST00000325110 HRCP23327 699 aa21.02■□□□□ 0.96
HMGCS1-201ENST00000325110 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
HMGCS1-201ENST00000325110 PPARGC1BQ86YN6 1023 aaKnown RBP20.9■□□□□ 0.94
HMGCS1-201ENST00000325110 FAM9AQ8IZU1 332 aaPredicted RBP20.88■□□□□ 0.93
HMGCS1-201ENST00000325110 TRIM41Q8WV44 630 aa20.68■□□□□ 0.9
HMGCS1-201ENST00000325110 TRIM26Q12899 539 aaPredicted RBP20.53■□□□□ 0.88
HMGCS1-201ENST00000325110 SCRIBQ14160 1630 aa20.46■□□□□ 0.87
HMGCS1-201ENST00000325110 DCAF1Q9Y4B6 1507 aa20.45■□□□□ 0.86
HMGCS1-201ENST00000325110 ABCC9O60706 1549 aa20.35■□□□□ 0.85
HMGCS1-201ENST00000325110 RSF1Q96T23 1441 aaPredicted RBP20.31■□□□□ 0.84
HMGCS1-201ENST00000325110 TTBK1Q5TCY1 1321 aaPredicted RBP20.31■□□□□ 0.84
HMGCS1-201ENST00000325110 ZEB1P37275 1124 aaPredicted RBP20.11■□□□□ 0.81
HMGCS1-201ENST00000325110 RB1CC1Q8TDY2 1594 aa20.1■□□□□ 0.81
HMGCS1-201ENST00000325110 CECR2Q9BXF3 1484 aa20.05■□□□□ 0.8
HMGCS1-201ENST00000325110 CCER1Q8TC90 406 aaPredicted RBP19.99■□□□□ 0.79
HMGCS1-201ENST00000325110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.98■□□□□ 0.79
HMGCS1-201ENST00000325110 MROH2BQ7Z745 1585 aa19.88■□□□□ 0.77
HMGCS1-201ENST00000325110 UBTFP17480 764 aaKnown RBP19.85■□□□□ 0.77
HMGCS1-201ENST00000325110 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
HMGCS1-201ENST00000325110 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.763e-10■□□□□ 9.4
HMGCS1-201ENST00000325110 WIZO95785 1651 aa19.75■□□□□ 0.75
HMGCS1-201ENST00000325110 NACADO15069 1562 aa19.74■□□□□ 0.75
HMGCS1-201ENST00000325110 ABCC8Q09428 1581 aa19.57■□□□□ 0.72
HMGCS1-201ENST00000325110 SCAF1Q9H7N4 1312 aaKnown RBP19.55■□□□□ 0.72
HMGCS1-201ENST00000325110 HNRNPUL2Q1KMD3 747 aaKnown RBP19.55■□□□□ 0.72
HMGCS1-201ENST00000325110 CSRNP3Q8WYN3 585 aa19.53■□□□□ 0.72
HMGCS1-201ENST00000325110 DIEXFQ68CQ4 756 aaKnown RBP19.51■□□□□ 0.71
HMGCS1-201ENST00000325110 CCDC88BA6NC98 1476 aa19.51■□□□□ 0.71
HMGCS1-201ENST00000325110 BAZ1AQ9NRL2 1556 aaPredicted RBP19.51■□□□□ 0.71
HMGCS1-201ENST00000325110 APLP2Q06481 763 aa19.5■□□□□ 0.71
HMGCS1-201ENST00000325110 SOGA1O94964 1423 aa19.48■□□□□ 0.71
HMGCS1-201ENST00000325110 YTHDC1Q96MU7 727 aaKnown RBP19.47■□□□□ 0.71
HMGCS1-201ENST00000325110 CEP162Q5TB80 1403 aa19.45■□□□□ 0.7
HMGCS1-201ENST00000325110 CENPBP07199 599 aaPredicted RBP19.39■□□□□ 0.69
HMGCS1-201ENST00000325110 NEUROD1Q13562 356 aa19.36■□□□□ 0.69
HMGCS1-201ENST00000325110 RUSC2Q8N2Y8 1516 aa19.34■□□□□ 0.69
HMGCS1-201ENST00000325110 ACIN1Q9UKV3 1341 aaKnown RBP19.32■□□□□ 0.68
HMGCS1-201ENST00000325110 TOP2AP11388 1531 aaKnown RBP19.3■□□□□ 0.68
HMGCS1-201ENST00000325110 GTF3C3Q9Y5Q9 886 aa19.29■□□□□ 0.68
HMGCS1-201ENST00000325110 TNIKQ9UKE5 1360 aa19.27■□□□□ 0.68
HMGCS1-201ENST00000325110 SMARCA4P51532 1647 aa19.26■□□□□ 0.67
HMGCS1-201ENST00000325110 PELP1Q8IZL8 1130 aaKnown RBP19.22■□□□□ 0.67
HMGCS1-201ENST00000325110 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.67
HMGCS1-201ENST00000325110 SMARCA2P51531 1590 aa19.22■□□□□ 0.67
HMGCS1-201ENST00000325110 ZNF316A6NFI3 1004 aaPredicted RBP19.21■□□□□ 0.67
HMGCS1-201ENST00000325110 GOLGA3Q08378 1498 aa19.17■□□□□ 0.66
HMGCS1-201ENST00000325110 ITGAEP38570 1179 aa19.15■□□□□ 0.66
HMGCS1-201ENST00000325110 EEA1Q15075 1411 aa19.13■□□□□ 0.65
HMGCS1-201ENST00000325110 CLIP1P30622 1438 aa19.13■□□□□ 0.65
HMGCS1-201ENST00000325110 EIF4G1Q04637 1599 aaKnown RBP19.09■□□□□ 0.65
HMGCS1-201ENST00000325110 MIER1Q8N108 512 aa19.03■□□□□ 0.64
HMGCS1-201ENST00000325110 CEP164Q9UPV0 1460 aa19.02■□□□□ 0.63
HMGCS1-201ENST00000325110 ATP1B4Q9UN42 357 aaPredicted RBP19■□□□□ 0.63
HMGCS1-201ENST00000325110 BAZ1BQ9UIG0 1483 aaKnown RBP18.99■□□□□ 0.63
HMGCS1-201ENST00000325110 RAPGEF2Q9Y4G8 1499 aa18.93■□□□□ 0.62
HMGCS1-201ENST00000325110 UNC13AQ9UPW8 1703 aa18.92■□□□□ 0.62
HMGCS1-201ENST00000325110 SYNJ1O43426 1573 aa18.89■□□□□ 0.61
HMGCS1-201ENST00000325110 VPS8Q8N3P4 1428 aa18.89■□□□□ 0.61
HMGCS1-201ENST00000325110 ATAD2BQ9ULI0 1458 aa18.88■□□□□ 0.61
HMGCS1-201ENST00000325110 KANK4Q5T7N3 995 aaPredicted RBP18.84■□□□□ 0.61
HMGCS1-201ENST00000325110 BICRAQ9NZM4 1560 aa18.82■□□□□ 0.6
HMGCS1-201ENST00000325110 P3H3Q8IVL6 736 aa18.79■□□□□ 0.6
HMGCS1-201ENST00000325110 FAM50AQ14320 339 aaKnown RBP18.74■□□□□ 0.59
HMGCS1-201ENST00000325110 KIF21BO75037 1637 aa18.68■□□□□ 0.58
HMGCS1-201ENST00000325110 KIF27Q86VH2 1401 aa18.64■□□□□ 0.57
HMGCS1-201ENST00000325110 DHX57Q6P158 1386 aaKnown RBP18.6■□□□□ 0.57
HMGCS1-201ENST00000325110 PEG3Q9GZU2 1588 aa18.57■□□□□ 0.56
HMGCS1-201ENST00000325110 HIRIP3Q9BW71 556 aaPredicted RBP18.56■□□□□ 0.56
HMGCS1-201ENST00000325110 CCNB3Q8WWL7 1395 aa18.54■□□□□ 0.56
HMGCS1-201ENST00000325110 ARAP1Q96P48 1450 aa18.54■□□□□ 0.56
HMGCS1-201ENST00000325110 BCANQ96GW7 911 aa18.53■□□□□ 0.56
HMGCS1-201ENST00000325110 CUX2O14529 1486 aa18.51■□□□□ 0.55
HMGCS1-201ENST00000325110 TOP2BQ02880 1626 aa18.51■□□□□ 0.55
HMGCS1-201ENST00000325110 DDX10Q13206 875 aaKnown RBP18.5■□□□□ 0.55
HMGCS1-201ENST00000325110 SIN3AQ96ST3 1273 aa18.5■□□□□ 0.55
HMGCS1-201ENST00000325110 PRXQ9BXM0 1461 aa18.48■□□□□ 0.55
HMGCS1-201ENST00000325110 CLSPNQ9HAW4 1339 aa18.47■□□□□ 0.55
HMGCS1-201ENST00000325110 CUX1P39880 1505 aa18.45■□□□□ 0.54
HMGCS1-201ENST00000325110 KCNH8Q96L42 1107 aa18.45■□□□□ 0.54
HMGCS1-201ENST00000325110 RAB3GAP2Q9H2M9 1393 aa18.43■□□□□ 0.54
HMGCS1-201ENST00000325110 CARMIL1Q5VZK9 1371 aa18.42■□□□□ 0.54
HMGCS1-201ENST00000325110 ARHGAP35Q9NRY4 1499 aa18.39■□□□□ 0.53
HMGCS1-201ENST00000325110 ERICH3Q5RHP9 1530 aa18.38■□□□□ 0.53
HMGCS1-201ENST00000325110 SUPT16HQ9Y5B9 1047 aaKnown RBP18.37■□□□□ 0.53
HMGCS1-201ENST00000325110 NCAPD3P42695 1498 aa18.37■□□□□ 0.53
HMGCS1-201ENST00000325110 ARID3CA6NKF2 412 aa18.36■□□□□ 0.53
HMGCS1-201ENST00000325110 IGF1RP08069 1367 aa18.35■□□□□ 0.53
HMGCS1-201ENST00000325110 TRIM52Q96A61 297 aa18.32■□□□□ 0.52
HMGCS1-201ENST00000325110 RRBP1Q9P2E9 1410 aaKnown RBP18.32■□□□□ 0.52
HMGCS1-201ENST00000325110 NEFLP07196 543 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms