RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 NISCHQ9Y2I1 1504 aa21.57■■□□□ 1.04
HMGCS1-202ENST00000433297 SHROOM4Q9ULL8 1493 aa19.54■□□□□ 0.72
HMGCS1-202ENST00000433297 SUPT5HO00267 1087 aaKnown RBP19.5■□□□□ 0.71
HMGCS1-202ENST00000433297 HRCP23327 699 aa19.45■□□□□ 0.7
HMGCS1-202ENST00000433297 PCGF6Q9BYE7 350 aa19.28■□□□□ 0.68
HMGCS1-202ENST00000433297 PPARGC1BQ86YN6 1023 aaKnown RBP19.24■□□□□ 0.67
HMGCS1-202ENST00000433297 MYO15BQ96JP2 1530 aa18.96■□□□□ 0.63
HMGCS1-202ENST00000433297 CHIC1Q5VXU3 224 aa18.95■□□□□ 0.62
HMGCS1-202ENST00000433297 LOC105371045A0A1W2PR82 267 aa18.68■□□□□ 0.58
HMGCS1-202ENST00000433297 PELP1Q8IZL8 1130 aaKnown RBP18.62■□□□□ 0.57
HMGCS1-202ENST00000433297 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
HMGCS1-202ENST00000433297 TRIM26Q12899 539 aaPredicted RBP18.51■□□□□ 0.55
HMGCS1-202ENST00000433297 SCAF1Q9H7N4 1312 aaKnown RBP18.43■□□□□ 0.54
HMGCS1-202ENST00000433297 DCAF1Q9Y4B6 1507 aa18.42■□□□□ 0.54
HMGCS1-202ENST00000433297 ZEB1P37275 1124 aaPredicted RBP18.29■□□□□ 0.52
HMGCS1-202ENST00000433297 ZCCHC6Q5VYS8 1495 aaKnown RBP18.29■□□□□ 0.52
HMGCS1-202ENST00000433297 EHMT2Q96KQ7 1210 aa18.18■□□□□ 0.5
HMGCS1-202ENST00000433297 CCDC180Q9P1Z9 1646 aa18.13■□□□□ 0.49
HMGCS1-202ENST00000433297 FAM9AQ8IZU1 332 aaPredicted RBP18.11■□□□□ 0.49
HMGCS1-202ENST00000433297 NEUROD1Q13562 356 aa17.99■□□□□ 0.47
HMGCS1-202ENST00000433297 ACIN1Q9UKV3 1341 aaKnown RBP17.98■□□□□ 0.47
HMGCS1-202ENST00000433297 TRIM41Q8WV44 630 aa17.94■□□□□ 0.46
HMGCS1-202ENST00000433297 GTF3C3Q9Y5Q9 886 aa17.93■□□□□ 0.46
HMGCS1-202ENST00000433297 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.88■□□□□ 0.45
HMGCS1-202ENST00000433297 CCER1Q8TC90 406 aaPredicted RBP17.85■□□□□ 0.45
HMGCS1-202ENST00000433297 MYT1Q01538 1121 aa17.84■□□□□ 0.45
HMGCS1-202ENST00000433297 CENPBP07199 599 aaPredicted RBP17.82■□□□□ 0.44
HMGCS1-202ENST00000433297 DIEXFQ68CQ4 756 aaKnown RBP17.77■□□□□ 0.44
HMGCS1-202ENST00000433297 TTBK1Q5TCY1 1321 aaPredicted RBP17.7■□□□□ 0.42
HMGCS1-202ENST00000433297 YTHDC1Q96MU7 727 aaKnown RBP17.67■□□□□ 0.42
HMGCS1-202ENST00000433297 RSF1Q96T23 1441 aaPredicted RBP17.45■□□□□ 0.38
HMGCS1-202ENST00000433297 ZNF316A6NFI3 1004 aaPredicted RBP17.38■□□□□ 0.37
HMGCS1-202ENST00000433297 RB1CC1Q8TDY2 1594 aa17.34■□□□□ 0.37
HMGCS1-202ENST00000433297 ABCC9O60706 1549 aa17.34■□□□□ 0.37
HMGCS1-202ENST00000433297 MIER1Q8N108 512 aa17.33■□□□□ 0.36
HMGCS1-202ENST00000433297 SCRIBQ14160 1630 aa17.21■□□□□ 0.35
HMGCS1-202ENST00000433297 HNRNPUL2Q1KMD3 747 aaKnown RBP17.16■□□□□ 0.34
HMGCS1-202ENST00000433297 UBTFP17480 764 aaKnown RBP17.11■□□□□ 0.33
HMGCS1-202ENST00000433297 CECR2Q9BXF3 1484 aa17.02■□□□□ 0.31
HMGCS1-202ENST00000433297 CEP162Q5TB80 1403 aa17.02■□□□□ 0.31
HMGCS1-202ENST00000433297 SUPT16HQ9Y5B9 1047 aaKnown RBP16.99■□□□□ 0.31
HMGCS1-202ENST00000433297 WRNQ14191 1432 aaPredicted RBP eCLIP16.94■□□□□ 0.3
HMGCS1-202ENST00000433297 MROH2BQ7Z745 1585 aa16.93■□□□□ 0.3
HMGCS1-202ENST00000433297 RANGAP1P46060 587 aaPredicted RBP16.91■□□□□ 0.3
HMGCS1-202ENST00000433297 ANP32EQ9BTT0 268 aa16.91■□□□□ 0.3
HMGCS1-202ENST00000433297 TSHZ2Q9NRE2 1034 aa16.9■□□□□ 0.3
HMGCS1-202ENST00000433297 CSRNP3Q8WYN3 585 aa16.87■□□□□ 0.29
HMGCS1-202ENST00000433297 CCDC88BA6NC98 1476 aa16.87■□□□□ 0.29
HMGCS1-202ENST00000433297 SOGA1O94964 1423 aa16.87■□□□□ 0.29
HMGCS1-202ENST00000433297 BCL11AQ9H165 835 aa16.87■□□□□ 0.29
HMGCS1-202ENST00000433297 BCANQ96GW7 911 aa16.87■□□□□ 0.29
HMGCS1-202ENST00000433297 WIZO95785 1651 aa16.86■□□□□ 0.29
HMGCS1-202ENST00000433297 TNIKQ9UKE5 1360 aa16.85■□□□□ 0.29
HMGCS1-202ENST00000433297 ABCC8Q09428 1581 aa16.84■□□□□ 0.29
HMGCS1-202ENST00000433297 APLP2Q06481 763 aa16.84■□□□□ 0.29
HMGCS1-202ENST00000433297 CLSPNQ9HAW4 1339 aa16.76■□□□□ 0.27
HMGCS1-202ENST00000433297 RUSC2Q8N2Y8 1516 aa16.76■□□□□ 0.27
HMGCS1-202ENST00000433297 KCNH8Q96L42 1107 aa16.7■□□□□ 0.26
HMGCS1-202ENST00000433297 FKBP8Q14318 412 aa16.67■□□□□ 0.26
HMGCS1-202ENST00000433297 GOLGA3Q08378 1498 aa16.63■□□□□ 0.25
HMGCS1-202ENST00000433297 CLIP1P30622 1438 aa16.59■□□□□ 0.25
HMGCS1-202ENST00000433297 BAZ1AQ9NRL2 1556 aaPredicted RBP16.59■□□□□ 0.25
HMGCS1-202ENST00000433297 EIF4G1Q04637 1599 aaKnown RBP16.59■□□□□ 0.25
HMGCS1-202ENST00000433297 ITGAEP38570 1179 aa16.58■□□□□ 0.24
HMGCS1-202ENST00000433297 EEA1Q15075 1411 aa16.57■□□□□ 0.24
HMGCS1-202ENST00000433297 RBM19Q9Y4C8 960 aaKnown RBP16.55■□□□□ 0.24
HMGCS1-202ENST00000433297 DHX57Q6P158 1386 aaKnown RBP16.54■□□□□ 0.24
HMGCS1-202ENST00000433297 NEFLP07196 543 aa16.54■□□□□ 0.24
HMGCS1-202ENST00000433297 DDX10Q13206 875 aaKnown RBP16.5■□□□□ 0.23
HMGCS1-202ENST00000433297 VPS8Q8N3P4 1428 aa16.49■□□□□ 0.23
HMGCS1-202ENST00000433297 TRIM52Q96A61 297 aa16.47■□□□□ 0.23
HMGCS1-202ENST00000433297 CEP164Q9UPV0 1460 aa16.44■□□□□ 0.22
HMGCS1-202ENST00000433297 TOP2AP11388 1531 aaKnown RBP16.43■□□□□ 0.22
HMGCS1-202ENST00000433297 KANK4Q5T7N3 995 aaPredicted RBP16.43■□□□□ 0.22
HMGCS1-202ENST00000433297 HIRIP3Q9BW71 556 aaPredicted RBP16.42■□□□□ 0.22
HMGCS1-202ENST00000433297 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
HMGCS1-202ENST00000433297 ERICH6Q7L0X2 663 aa16.41■□□□□ 0.22
HMGCS1-202ENST00000433297 NACADO15069 1562 aa16.41■□□□□ 0.22
HMGCS1-202ENST00000433297 RAPGEF2Q9Y4G8 1499 aa16.36■□□□□ 0.21
HMGCS1-202ENST00000433297 MSH5O43196 834 aa16.35■□□□□ 0.21
HMGCS1-202ENST00000433297 IRX6P78412 446 aaPredicted RBP16.33■□□□□ 0.2
HMGCS1-202ENST00000433297 SIN3AQ96ST3 1273 aa16.3■□□□□ 0.2
HMGCS1-202ENST00000433297 KIF21BO75037 1637 aa16.29■□□□□ 0.2
HMGCS1-202ENST00000433297 ANP32CO43423 234 aa16.28■□□□□ 0.2
HMGCS1-202ENST00000433297 SMARCA4P51532 1647 aa16.25■□□□□ 0.19
HMGCS1-202ENST00000433297 CDK11AQ9UQ88 783 aaPredicted RBP16.25■□□□□ 0.19
HMGCS1-202ENST00000433297 PABPN1Q86U42 306 aaKnown RBP eCLIP16.22■□□□□ 0.193e-10■□□□□ 9.4
HMGCS1-202ENST00000433297 SYNJ1O43426 1573 aa16.21■□□□□ 0.19
HMGCS1-202ENST00000433297 CCNB3Q8WWL7 1395 aa16.2■□□□□ 0.18
HMGCS1-202ENST00000433297 RAB3GAP2Q9H2M9 1393 aa16.2■□□□□ 0.18
HMGCS1-202ENST00000433297 BAZ1BQ9UIG0 1483 aaKnown RBP16.19■□□□□ 0.18
HMGCS1-202ENST00000433297 PPP1R15AO75807 674 aaPredicted RBP16.18■□□□□ 0.18
HMGCS1-202ENST00000433297 HNRNPUQ00839 825 aaKnown RBP eCLIP16.17■□□□□ 0.18
HMGCS1-202ENST00000433297 FAM50AQ14320 339 aaKnown RBP16.17■□□□□ 0.18
HMGCS1-202ENST00000433297 CCER2I3L3R5 266 aa16.13■□□□□ 0.17
HMGCS1-202ENST00000433297 RRBP1Q9P2E9 1410 aaKnown RBP16.13■□□□□ 0.17
HMGCS1-202ENST00000433297 ATP1B4Q9UN42 357 aaPredicted RBP16.12■□□□□ 0.17
HMGCS1-202ENST00000433297 FANCIQ9NVI1 1328 aa16.12■□□□□ 0.17
HMGCS1-202ENST00000433297 DEKP35659 375 aaKnown RBP16.11■□□□□ 0.17
HMGCS1-202ENST00000433297 ARAP1Q96P48 1450 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms