RNA–Protein interactions for RNA: ENST00000413219.6

SDCBP-202, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SDCBP, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-202ENST00000413219 NISCHQ9Y2I1 1504 aa35.49■■■■□ 3.27
SDCBP-202ENST00000413219 SHROOM4Q9ULL8 1493 aa30.3■■■□□ 2.44
SDCBP-202ENST00000413219 ZCCHC6Q5VYS8 1495 aaKnown RBP30.14■■■□□ 2.41
SDCBP-202ENST00000413219 CCDC180Q9P1Z9 1646 aa30.06■■■□□ 2.4
SDCBP-202ENST00000413219 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.38
SDCBP-202ENST00000413219 CHIC1Q5VXU3 224 aa29.47■■■□□ 2.31
SDCBP-202ENST00000413219 MYO15BQ96JP2 1530 aa29.43■■■□□ 2.3
SDCBP-202ENST00000413219 HRCP23327 699 aa29.36■■■□□ 2.29
SDCBP-202ENST00000413219 DCAF1Q9Y4B6 1507 aa29.25■■■□□ 2.27
SDCBP-202ENST00000413219 DCAF8L2P0C7V8 631 aa28.98■■■□□ 2.23
SDCBP-202ENST00000413219 PCGF6Q9BYE7 350 aa28.89■■■□□ 2.22
SDCBP-202ENST00000413219 ABCC9O60706 1549 aa28.52■■■□□ 2.16
SDCBP-202ENST00000413219 LOC105371045A0A1W2PR82 267 aa28.48■■■□□ 2.15
SDCBP-202ENST00000413219 PPARGC1BQ86YN6 1023 aaKnown RBP28.46■■■□□ 2.15
SDCBP-202ENST00000413219 TRIM26Q12899 539 aaPredicted RBP28.41■■■□□ 2.14
SDCBP-202ENST00000413219 RSF1Q96T23 1441 aaPredicted RBP28.21■■■□□ 2.11
SDCBP-202ENST00000413219 ZEB1P37275 1124 aaPredicted RBP28.09■■■□□ 2.09
SDCBP-202ENST00000413219 SCRIBQ14160 1630 aa28.05■■■□□ 2.08
SDCBP-202ENST00000413219 RB1CC1Q8TDY2 1594 aa28.04■■■□□ 2.08
SDCBP-202ENST00000413219 TRIM41Q8WV44 630 aa27.96■■■□□ 2.07
SDCBP-202ENST00000413219 NACADO15069 1562 aa27.66■■■□□ 2.02
SDCBP-202ENST00000413219 FAM9AQ8IZU1 332 aaPredicted RBP27.6■■■□□ 2.01
SDCBP-202ENST00000413219 CECR2Q9BXF3 1484 aa27.55■■■□□ 2
SDCBP-202ENST00000413219 MROH2BQ7Z745 1585 aa27.54■■■□□ 2
SDCBP-202ENST00000413219 PELP1Q8IZL8 1130 aaKnown RBP27.47■■□□□ 1.99
SDCBP-202ENST00000413219 WIZO95785 1651 aa27.4■■□□□ 1.98
SDCBP-202ENST00000413219 BAZ1AQ9NRL2 1556 aaPredicted RBP27.39■■□□□ 1.97
SDCBP-202ENST00000413219 EIF4G1Q04637 1599 aaKnown RBP27.36■■□□□ 1.97
SDCBP-202ENST00000413219 SCAF1Q9H7N4 1312 aaKnown RBP27.23■■□□□ 1.95
SDCBP-202ENST00000413219 EHMT2Q96KQ7 1210 aa27.22■■□□□ 1.95
SDCBP-202ENST00000413219 WRNQ14191 1432 aaPredicted RBP eCLIP27.13■■□□□ 1.93
SDCBP-202ENST00000413219 TOP2AP11388 1531 aaKnown RBP27.08■■□□□ 1.93
SDCBP-202ENST00000413219 CCER1Q8TC90 406 aaPredicted RBP27.04■■□□□ 1.92
SDCBP-202ENST00000413219 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.02■■□□□ 1.92
SDCBP-202ENST00000413219 SMARCA4P51532 1647 aa26.93■■□□□ 1.9
SDCBP-202ENST00000413219 CCDC88BA6NC98 1476 aa26.92■■□□□ 1.9
SDCBP-202ENST00000413219 SMARCA2P51531 1590 aa26.92■■□□□ 1.9
SDCBP-202ENST00000413219 ACIN1Q9UKV3 1341 aaKnown RBP26.91■■□□□ 1.9
SDCBP-202ENST00000413219 CEP162Q5TB80 1403 aa26.91■■□□□ 1.9
SDCBP-202ENST00000413219 EEA1Q15075 1411 aa26.91■■□□□ 1.9
SDCBP-202ENST00000413219 ABCC8Q09428 1581 aa26.91■■□□□ 1.9
SDCBP-202ENST00000413219 TNIKQ9UKE5 1360 aa26.9■■□□□ 1.9
SDCBP-202ENST00000413219 DIEXFQ68CQ4 756 aaKnown RBP26.8■■□□□ 1.88
SDCBP-202ENST00000413219 SOGA1O94964 1423 aa26.75■■□□□ 1.87
SDCBP-202ENST00000413219 NEUROD1Q13562 356 aa26.75■■□□□ 1.87
SDCBP-202ENST00000413219 CENPBP07199 599 aaPredicted RBP26.74■■□□□ 1.87
SDCBP-202ENST00000413219 CSRNP3Q8WYN3 585 aa26.69■■□□□ 1.86
SDCBP-202ENST00000413219 GOLGA3Q08378 1498 aa26.66■■□□□ 1.86
SDCBP-202ENST00000413219 UNC13AQ9UPW8 1703 aa26.61■■□□□ 1.85
SDCBP-202ENST00000413219 RUSC2Q8N2Y8 1516 aa26.57■■□□□ 1.84
SDCBP-202ENST00000413219 UBTFP17480 764 aaKnown RBP26.54■■□□□ 1.84
SDCBP-202ENST00000413219 ZNF316A6NFI3 1004 aaPredicted RBP26.53■■□□□ 1.84
SDCBP-202ENST00000413219 GTF3C3Q9Y5Q9 886 aa26.53■■□□□ 1.84
SDCBP-202ENST00000413219 TTBK1Q5TCY1 1321 aaPredicted RBP26.51■■□□□ 1.83
SDCBP-202ENST00000413219 KIF21BO75037 1637 aa26.48■■□□□ 1.83
SDCBP-202ENST00000413219 PEG3Q9GZU2 1588 aa26.48■■□□□ 1.83
SDCBP-202ENST00000413219 CEP164Q9UPV0 1460 aa26.48■■□□□ 1.83
SDCBP-202ENST00000413219 BAZ1BQ9UIG0 1483 aaKnown RBP26.34■■□□□ 1.81
SDCBP-202ENST00000413219 SYNJ1O43426 1573 aa26.32■■□□□ 1.8
SDCBP-202ENST00000413219 CLIP1P30622 1438 aa26.32■■□□□ 1.8
SDCBP-202ENST00000413219 VPS8Q8N3P4 1428 aa26.31■■□□□ 1.8
SDCBP-202ENST00000413219 BICRAQ9NZM4 1560 aa26.29■■□□□ 1.8
SDCBP-202ENST00000413219 MYT1Q01538 1121 aa26.27■■□□□ 1.8
SDCBP-202ENST00000413219 HNRNPUL2Q1KMD3 747 aaKnown RBP26.17■■□□□ 1.78
SDCBP-202ENST00000413219 MIER1Q8N108 512 aa26.12■■□□□ 1.77
SDCBP-202ENST00000413219 ATAD2BQ9ULI0 1458 aa26.12■■□□□ 1.77
SDCBP-202ENST00000413219 APLP2Q06481 763 aa26.11■■□□□ 1.77
SDCBP-202ENST00000413219 RAPGEF2Q9Y4G8 1499 aa26.11■■□□□ 1.77
SDCBP-202ENST00000413219 CLSPNQ9HAW4 1339 aa26.09■■□□□ 1.77
SDCBP-202ENST00000413219 PABPN1Q86U42 306 aaKnown RBP eCLIP26.05■■□□□ 1.76
SDCBP-202ENST00000413219 TOP2BQ02880 1626 aa26.04■■□□□ 1.76
SDCBP-202ENST00000413219 YTHDC1Q96MU7 727 aaKnown RBP26.03■■□□□ 1.76
SDCBP-202ENST00000413219 ERICH3Q5RHP9 1530 aa25.99■■□□□ 1.75
SDCBP-202ENST00000413219 BIVM-ERCC5R4GMW8 1640 aa25.96■■□□□ 1.75
SDCBP-202ENST00000413219 PRXQ9BXM0 1461 aa25.9■■□□□ 1.74
SDCBP-202ENST00000413219 DHX57Q6P158 1386 aaKnown RBP25.88■■□□□ 1.73
SDCBP-202ENST00000413219 ARAP1Q96P48 1450 aa25.86■■□□□ 1.73
SDCBP-202ENST00000413219 RRBP1Q9P2E9 1410 aaKnown RBP25.79■■□□□ 1.72
SDCBP-202ENST00000413219 CUX2O14529 1486 aa25.77■■□□□ 1.72
SDCBP-202ENST00000413219 RANGAP1P46060 587 aaPredicted RBP25.71■■□□□ 1.71
SDCBP-202ENST00000413219 KANK4Q5T7N3 995 aaPredicted RBP25.67■■□□□ 1.7
SDCBP-202ENST00000413219 KIF27Q86VH2 1401 aa25.66■■□□□ 1.7
SDCBP-202ENST00000413219 HMGXB3Q12766 1538 aa25.64■■□□□ 1.7
SDCBP-202ENST00000413219 CUX1P39880 1505 aa25.64■■□□□ 1.69
SDCBP-202ENST00000413219 CCNB3Q8WWL7 1395 aa25.59■■□□□ 1.69
SDCBP-202ENST00000413219 NCAPD3P42695 1498 aa25.57■■□□□ 1.68
SDCBP-202ENST00000413219 ARHGAP35Q9NRY4 1499 aa25.55■■□□□ 1.68
SDCBP-202ENST00000413219 SUPT16HQ9Y5B9 1047 aaKnown RBP25.51■■□□□ 1.67
SDCBP-202ENST00000413219 MAP3K1Q13233 1512 aa25.51■■□□□ 1.67
SDCBP-202ENST00000413219 CFTRP13569 1480 aa25.48■■□□□ 1.67
SDCBP-202ENST00000413219 MAPKBP1O60336 1514 aa25.39■■□□□ 1.66
SDCBP-202ENST00000413219 TIAM1Q13009 1591 aa25.39■■□□□ 1.66
SDCBP-202ENST00000413219 RAB3GAP2Q9H2M9 1393 aa25.38■■□□□ 1.65
SDCBP-202ENST00000413219 PRDM2Q13029 1718 aa25.34■■□□□ 1.65
SDCBP-202ENST00000413219 SETD5Q9C0A6 1442 aa25.32■■□□□ 1.64
SDCBP-202ENST00000413219 IGF1RP08069 1367 aa25.3■■□□□ 1.64
SDCBP-202ENST00000413219 LRRC9Q6ZRR7 1453 aa25.28■■□□□ 1.64
SDCBP-202ENST00000413219 ITGAEP38570 1179 aa25.25■■□□□ 1.63
SDCBP-202ENST00000413219 TIMELESSQ9UNS1 1208 aa25.24■■□□□ 1.63
SDCBP-202ENST00000413219 FHAD1B1AJZ9 1412 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms