RNA–Protein interactions for RNA: ENST00000630925.1

SDCBP-213, Transcript of syndecan binding protein, humanhuman

TSL 5 BASIC

Gene SDCBP, Length 2,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-213ENST00000630925 AEBP2Q6ZN18 517 aaPredicted RBP12.79□□□□□ -0.36
SDCBP-213ENST00000630925 POTEDQ86YR6 584 aa12.46□□□□□ -0.42
SDCBP-213ENST00000630925 CHIC1Q5VXU3 224 aa12.15□□□□□ -0.46
SDCBP-213ENST00000630925 SENP3Q9H4L4 574 aaPredicted RBP11.15□□□□□ -0.62
SDCBP-213ENST00000630925 PHF23Q9BUL5 403 aaPredicted RBP10.88□□□□□ -0.67
SDCBP-213ENST00000630925 SLC24A1O60721 1099 aa10.61□□□□□ -0.71
SDCBP-213ENST00000630925 FOXD1Q16676 465 aa10.33□□□□□ -0.76
SDCBP-213ENST00000630925 MSH5O43196 834 aa9.98□□□□□ -0.81
SDCBP-213ENST00000630925 EHMT2Q96KQ7 1210 aa9.98□□□□□ -0.81
SDCBP-213ENST00000630925 PLPPR3Q6T4P5 718 aa9.68□□□□□ -0.86
SDCBP-213ENST00000630925 RTN4Q9NQC3 1192 aaKnown RBP9.63□□□□□ -0.87
SDCBP-213ENST00000630925 PIAS4Q8N2W9 510 aaPredicted RBP9.59□□□□□ -0.87
SDCBP-213ENST00000630925 DAXXQ9UER7 740 aaPredicted RBP9.52□□□□□ -0.88
SDCBP-213ENST00000630925 NCBP3Q53F19 620 aaKnown RBP9.51□□□□□ -0.89
SDCBP-213ENST00000630925 AMER1Q5JTC6 1135 aaPredicted RBP9.49□□□□□ -0.89
SDCBP-213ENST00000630925 CSRNP3Q8WYN3 585 aa9.41□□□□□ -0.9
SDCBP-213ENST00000630925 KCNA4P22459 653 aa9.38□□□□□ -0.91
SDCBP-213ENST00000630925 POTEHQ6S545 545 aa9.36□□□□□ -0.91
SDCBP-213ENST00000630925 PPP6R1Q9UPN7 881 aa9.27□□□□□ -0.93
SDCBP-213ENST00000630925 ADRA2BP18089 450 aa9.24□□□□□ -0.93
SDCBP-213ENST00000630925 PRKCSHP14314 528 aaPredicted RBP9.11□□□□□ -0.95
SDCBP-213ENST00000630925 ARXQ96QS3 562 aa9.08□□□□□ -0.96
SDCBP-213ENST00000630925 CACNB1Q02641 598 aaPredicted RBP9.03□□□□□ -0.96
SDCBP-213ENST00000630925 SLC4A1APQ9BWU0 796 aaKnown RBP8.95□□□□□ -0.98
SDCBP-213ENST00000630925 TIMELESSQ9UNS1 1208 aa8.95□□□□□ -0.98
SDCBP-213ENST00000630925 TAOK2Q9UL54 1235 aa8.92□□□□□ -0.98
SDCBP-213ENST00000630925 APLP2Q06481 763 aa8.89□□□□□ -0.99
SDCBP-213ENST00000630925 TTBK1Q5TCY1 1321 aaPredicted RBP8.86□□□□□ -0.99
SDCBP-213ENST00000630925 BCANQ96GW7 911 aa8.84□□□□□ -0.99
SDCBP-213ENST00000630925 TULP1O00294 542 aaPredicted RBP8.79□□□□□ -1
SDCBP-213ENST00000630925 PELP1Q8IZL8 1130 aaKnown RBP8.77□□□□□ -1.01
SDCBP-213ENST00000630925 HOMEZQ8IX15 550 aa8.76□□□□□ -1.01
SDCBP-213ENST00000630925 DMRT2Q9Y5R5 561 aa8.74□□□□□ -1.01
SDCBP-213ENST00000630925 PLCB2Q00722 1185 aa8.72□□□□□ -1.01
SDCBP-213ENST00000630925 TPRNQ4KMQ1 711 aa8.72□□□□□ -1.01
SDCBP-213ENST00000630925 SCAF1Q9H7N4 1312 aaKnown RBP8.69□□□□□ -1.02
SDCBP-213ENST00000630925 RANGAP1P46060 587 aaPredicted RBP8.68□□□□□ -1.02
SDCBP-213ENST00000630925 MYT1Q01538 1121 aa8.68□□□□□ -1.02
SDCBP-213ENST00000630925 PLSCR2Q9NRY7 297 aa8.68□□□□□ -1.02
SDCBP-213ENST00000630925 ERICH6Q7L0X2 663 aa8.67□□□□□ -1.02
SDCBP-213ENST00000630925 ZBTB22O15209 634 aa8.63□□□□□ -1.03
SDCBP-213ENST00000630925 MAPK8IP2Q13387 824 aaPredicted RBP8.59□□□□□ -1.03
SDCBP-213ENST00000630925 GTF3C3Q9Y5Q9 886 aa8.59□□□□□ -1.03
SDCBP-213ENST00000630925 HAP1P54257 671 aaPredicted RBP8.55□□□□□ -1.04
SDCBP-213ENST00000630925 PODXL2Q9NZ53 605 aa8.51□□□□□ -1.05
SDCBP-213ENST00000630925 KLHL34Q8N239 644 aa8.5□□□□□ -1.05
SDCBP-213ENST00000630925 VSIG10Q8N0Z9 540 aa8.46□□□□□ -1.05
SDCBP-213ENST00000630925 TMEM132AQ24JP5 1023 aa8.42□□□□□ -1.06
SDCBP-213ENST00000630925 RNF39Q9H2S5 420 aa8.39□□□□□ -1.07
SDCBP-213ENST00000630925 DCAF8L1A6NGE4 600 aa8.38□□□□□ -1.07
SDCBP-213ENST00000630925 FKBP8Q14318 412 aa8.37□□□□□ -1.07
SDCBP-213ENST00000630925 NPM3O75607 178 aaKnown RBP8.32□□□□□ -1.08
SDCBP-213ENST00000630925 C1QBPQ07021 282 aaKnown RBP8.32□□□□□ -1.08
SDCBP-213ENST00000630925 NPM2Q86SE8 214 aaKnown RBP8.32□□□□□ -1.08
SDCBP-213ENST00000630925 KDM2AQ9Y2K7 1162 aa8.32□□□□□ -1.08
SDCBP-213ENST00000630925 C14orf37Q86TY3 774 aa8.3□□□□□ -1.08
SDCBP-213ENST00000630925 HOXD11P31277 338 aaPredicted RBP8.26□□□□□ -1.09
SDCBP-213ENST00000630925 FBXO3Q9UK99 471 aa8.26□□□□□ -1.09
SDCBP-213ENST00000630925 EIF5BO60841 1220 aaKnown RBP8.25□□□□□ -1.09
SDCBP-213ENST00000630925 FBLN2P98095 1184 aa8.21□□□□□ -1.1
SDCBP-213ENST00000630925 TRIM26Q12899 539 aaPredicted RBP8.18□□□□□ -1.1
SDCBP-213ENST00000630925 DNAJC5BQ9UF47 199 aa8.18□□□□□ -1.1
SDCBP-213ENST00000630925 PPP4R3CPQ6ZMV5 832 aa8.17□□□□□ -1.1
SDCBP-213ENST00000630925 FOXD4L1Q9NU39 408 aa8.15□□□□□ -1.1
SDCBP-213ENST00000630925 SUPT5HO00267 1087 aaKnown RBP8.11□□□□□ -1.11
SDCBP-213ENST00000630925 RNF216Q9NWF9 866 aaPredicted RBP8.11□□□□□ -1.11
SDCBP-213ENST00000630925 HRCP23327 699 aa8.09□□□□□ -1.11
SDCBP-213ENST00000630925 CNKSR2Q8WXI2 1034 aa8.09□□□□□ -1.11
SDCBP-213ENST00000630925 UBTFP17480 764 aaKnown RBP8.08□□□□□ -1.12
SDCBP-213ENST00000630925 DCAF8L2P0C7V8 631 aa8.02□□□□□ -1.12
SDCBP-213ENST00000630925 LOC105371045A0A1W2PR82 267 aa8.01□□□□□ -1.13
SDCBP-213ENST00000630925 NBR1Q14596 966 aa7.95□□□□□ -1.14
SDCBP-213ENST00000630925 ABCC9O60706 1549 aa7.94□□□□□ -1.14
SDCBP-213ENST00000630925 PLEKHG5O94827 1062 aa7.93□□□□□ -1.14
SDCBP-213ENST00000630925 PAXIP1Q6ZW49 1069 aaPredicted RBP7.92□□□□□ -1.14
SDCBP-213ENST00000630925 DNAJC5Q9H3Z4 198 aa7.91□□□□□ -1.14
SDCBP-213ENST00000630925 BBXQ8WY36 941 aaPredicted RBP7.9□□□□□ -1.14
SDCBP-213ENST00000630925 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.9□□□□□ -1.15
SDCBP-213ENST00000630925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.89□□□□□ -1.15
SDCBP-213ENST00000630925 TSHZ2Q9NRE2 1034 aa7.89□□□□□ -1.15
SDCBP-213ENST00000630925 CFAP44Q96MT7 982 aa7.87□□□□□ -1.15
SDCBP-213ENST00000630925 PKD2Q13563 968 aa7.85□□□□□ -1.15
SDCBP-213ENST00000630925 NPM1P06748 294 aaKnown RBP eCLIP7.83□□□□□ -1.16
SDCBP-213ENST00000630925 CCDC9Q9Y3X0 531 aaKnown RBP7.79□□□□□ -1.16
SDCBP-213ENST00000630925 NISCHQ9Y2I1 1504 aa7.77□□□□□ -1.17
SDCBP-213ENST00000630925 SHROOM4Q9ULL8 1493 aa7.77□□□□□ -1.17
SDCBP-213ENST00000630925 IGSF3O75054 1194 aa7.75□□□□□ -1.17
SDCBP-213ENST00000630925 ATXN8OSP0DMR3 200 aa7.74□□□□□ -1.17
SDCBP-213ENST00000630925 SP7Q8TDD2 431 aaPredicted RBP7.74□□□□□ -1.17
SDCBP-213ENST00000630925 SPRYD3Q8NCJ5 442 aa7.72□□□□□ -1.17
SDCBP-213ENST00000630925 CHMP4AQ9BY43 222 aa7.72□□□□□ -1.17
SDCBP-213ENST00000630925 CDK11BP21127 795 aaKnown RBP7.72□□□□□ -1.17
SDCBP-213ENST00000630925 CDK11AQ9UQ88 783 aaPredicted RBP7.72□□□□□ -1.17
SDCBP-213ENST00000630925 DSG3P32926 999 aa7.69□□□□□ -1.18
SDCBP-213ENST00000630925 BRPF1P55201 1214 aaPredicted RBP7.69□□□□□ -1.18
SDCBP-213ENST00000630925 SAMD1Q6SPF0 538 aaPredicted RBP7.69□□□□□ -1.18
SDCBP-213ENST00000630925 HMGB1P09429 215 aaKnown RBP7.68□□□□□ -1.18
SDCBP-213ENST00000630925 CAPN15O75808 1086 aa7.67□□□□□ -1.18
SDCBP-213ENST00000630925 TRHP20396 242 aaPredicted RBP7.67□□□□□ -1.18
SDCBP-213ENST00000630925 IFNLR1Q8IU57 520 aaPredicted RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms