RNA–Protein interactions for RNA: ENST00000488946.1

RPL13A-212, Transcript of ribosomal protein L13a, humanhuman

TSL 2

Gene RPL13A, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL13A-212ENST00000488946 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
RPL13A-212ENST00000488946 CCDC180Q9P1Z9 1646 aa26.96■■□□□ 1.91
RPL13A-212ENST00000488946 ZCCHC6Q5VYS8 1495 aaKnown RBP26.23■■□□□ 1.79
RPL13A-212ENST00000488946 ABCC9O60706 1549 aa26.14■■□□□ 1.78
RPL13A-212ENST00000488946 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
RPL13A-212ENST00000488946 SHROOM4Q9ULL8 1493 aa25.56■■□□□ 1.68
RPL13A-212ENST00000488946 DCAF8L2P0C7V8 631 aa25.34■■□□□ 1.65
RPL13A-212ENST00000488946 NACADO15069 1562 aa25.3■■□□□ 1.64
RPL13A-212ENST00000488946 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
RPL13A-212ENST00000488946 MYO15BQ96JP2 1530 aa25.26■■□□□ 1.63
RPL13A-212ENST00000488946 SCRIBQ14160 1630 aa24.8■■□□□ 1.56
RPL13A-212ENST00000488946 SUPT5HO00267 1087 aaKnown RBP24.77■■□□□ 1.56
RPL13A-212ENST00000488946 UNC13AQ9UPW8 1703 aa24.71■■□□□ 1.55
RPL13A-212ENST00000488946 BICRAQ9NZM4 1560 aa24.47■■□□□ 1.51
RPL13A-212ENST00000488946 PABPN1Q86U42 306 aaKnown RBP eCLIP24.47■■□□□ 1.514e-6■□□□□ 9.3
RPL13A-212ENST00000488946 RSF1Q96T23 1441 aaPredicted RBP24.26■■□□□ 1.47
RPL13A-212ENST00000488946 CECR2Q9BXF3 1484 aa24.09■■□□□ 1.45
RPL13A-212ENST00000488946 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
RPL13A-212ENST00000488946 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
RPL13A-212ENST00000488946 BAZ1AQ9NRL2 1556 aaPredicted RBP23.96■■□□□ 1.43
RPL13A-212ENST00000488946 WIZO95785 1651 aa23.87■■□□□ 1.41
RPL13A-212ENST00000488946 SMARCA4P51532 1647 aa23.82■■□□□ 1.4
RPL13A-212ENST00000488946 EIF4G1Q04637 1599 aaKnown RBP23.81■■□□□ 1.4
RPL13A-212ENST00000488946 DNAJC5BQ9UF47 199 aa23.8■■□□□ 1.4
RPL13A-212ENST00000488946 CC2D2AQ9P2K1 1620 aa23.67■■□□□ 1.38
RPL13A-212ENST00000488946 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.38
RPL13A-212ENST00000488946 PEG3Q9GZU2 1588 aa23.54■■□□□ 1.36
RPL13A-212ENST00000488946 SMARCA2P51531 1590 aa23.44■■□□□ 1.34
RPL13A-212ENST00000488946 CCDC88BA6NC98 1476 aa23.36■■□□□ 1.33
RPL13A-212ENST00000488946 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
RPL13A-212ENST00000488946 NCAPD3P42695 1498 aa23.32■■□□□ 1.32
RPL13A-212ENST00000488946 TRIM41Q8WV44 630 aa23.26■■□□□ 1.31
RPL13A-212ENST00000488946 PELP1Q8IZL8 1130 aaKnown RBP23.22■■□□□ 1.31
RPL13A-212ENST00000488946 HMGXB3Q12766 1538 aa23.22■■□□□ 1.31
RPL13A-212ENST00000488946 BAZ1BQ9UIG0 1483 aaKnown RBP23.18■■□□□ 1.3
RPL13A-212ENST00000488946 LOC105371045A0A1W2PR82 267 aa23.05■■□□□ 1.28
RPL13A-212ENST00000488946 ABCC8Q09428 1581 aa23.03■■□□□ 1.28
RPL13A-212ENST00000488946 HRCP23327 699 aa22.97■■□□□ 1.27
RPL13A-212ENST00000488946 FAM9AQ8IZU1 332 aaPredicted RBP22.83■■□□□ 1.25
RPL13A-212ENST00000488946 WRNQ14191 1432 aaPredicted RBP eCLIP22.81■■□□□ 1.24
RPL13A-212ENST00000488946 SYNJ1O43426 1573 aa22.76■■□□□ 1.23
RPL13A-212ENST00000488946 EEA1Q15075 1411 aa22.73■■□□□ 1.23
RPL13A-212ENST00000488946 LAMC3Q9Y6N6 1575 aa22.68■■□□□ 1.22
RPL13A-212ENST00000488946 NESP48681 1621 aa22.68■■□□□ 1.22
RPL13A-212ENST00000488946 SOGA1O94964 1423 aa22.66■■□□□ 1.22
RPL13A-212ENST00000488946 CADPSQ9ULU8 1353 aa22.65■■□□□ 1.22
RPL13A-212ENST00000488946 PCGF6Q9BYE7 350 aa22.64■■□□□ 1.22
RPL13A-212ENST00000488946 CFTRP13569 1480 aa22.63■■□□□ 1.21
RPL13A-212ENST00000488946 TOP2BQ02880 1626 aa22.62■■□□□ 1.21
RPL13A-212ENST00000488946 BIVM-ERCC5R4GMW8 1640 aa22.62■■□□□ 1.21
RPL13A-212ENST00000488946 PRDM2Q13029 1718 aa22.62■■□□□ 1.21
RPL13A-212ENST00000488946 MYT1Q01538 1121 aa22.59■■□□□ 1.21
RPL13A-212ENST00000488946 RUSC2Q8N2Y8 1516 aa22.56■■□□□ 1.2
RPL13A-212ENST00000488946 ERCC6Q03468 1493 aa22.54■■□□□ 1.2
RPL13A-212ENST00000488946 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
RPL13A-212ENST00000488946 CSRNP3Q8WYN3 585 aa22.48■■□□□ 1.19
RPL13A-212ENST00000488946 KIF21BO75037 1637 aa22.46■■□□□ 1.19
RPL13A-212ENST00000488946 EHMT2Q96KQ7 1210 aa22.46■■□□□ 1.19
RPL13A-212ENST00000488946 KIF21AQ7Z4S6 1674 aa22.45■■□□□ 1.18
RPL13A-212ENST00000488946 CUX1P39880 1505 aa22.45■■□□□ 1.18
RPL13A-212ENST00000488946 GOLGA3Q08378 1498 aa22.44■■□□□ 1.18
RPL13A-212ENST00000488946 TNIKQ9UKE5 1360 aa22.43■■□□□ 1.18
RPL13A-212ENST00000488946 PPARGC1BQ86YN6 1023 aaKnown RBP22.4■■□□□ 1.18
RPL13A-212ENST00000488946 FANCD2Q9BXW9 1451 aa22.39■■□□□ 1.17
RPL13A-212ENST00000488946 CEP164Q9UPV0 1460 aa22.39■■□□□ 1.17
RPL13A-212ENST00000488946 TRIM26Q12899 539 aaPredicted RBP22.37■■□□□ 1.17
RPL13A-212ENST00000488946 CEP162Q5TB80 1403 aa22.35■■□□□ 1.17
RPL13A-212ENST00000488946 THOC2Q8NI27 1593 aaKnown RBP22.29■■□□□ 1.16
RPL13A-212ENST00000488946 MRC2Q9UBG0 1479 aa22.27■■□□□ 1.16
RPL13A-212ENST00000488946 CUX2O14529 1486 aa22.23■■□□□ 1.15
RPL13A-212ENST00000488946 ERICH3Q5RHP9 1530 aa22.22■■□□□ 1.15
RPL13A-212ENST00000488946 RAPGEF2Q9Y4G8 1499 aa22.2■■□□□ 1.14
RPL13A-212ENST00000488946 WDR62O43379 1518 aa22.19■■□□□ 1.14
RPL13A-212ENST00000488946 PRXQ9BXM0 1461 aa22.18■■□□□ 1.14
RPL13A-212ENST00000488946 UBTFP17480 764 aaKnown RBP22.18■■□□□ 1.14
RPL13A-212ENST00000488946 KIF27Q86VH2 1401 aa22.17■■□□□ 1.14
RPL13A-212ENST00000488946 URB2Q14146 1524 aaKnown RBP22.14■■□□□ 1.13
RPL13A-212ENST00000488946 DNMBPQ6XZF7 1577 aa22.11■■□□□ 1.13
RPL13A-212ENST00000488946 FGD5Q6ZNL6 1462 aa22.11■■□□□ 1.13
RPL13A-212ENST00000488946 CLIP1P30622 1438 aa22.06■■□□□ 1.12
RPL13A-212ENST00000488946 TOPBP1Q92547 1522 aa22.05■■□□□ 1.12
RPL13A-212ENST00000488946 VPS8Q8N3P4 1428 aa21.96■■□□□ 1.11
RPL13A-212ENST00000488946 SCAF1Q9H7N4 1312 aaKnown RBP21.96■■□□□ 1.11
RPL13A-212ENST00000488946 POLA1P09884 1462 aaPredicted RBP21.95■■□□□ 1.1
RPL13A-212ENST00000488946 ABCA10Q8WWZ4 1543 aa21.94■■□□□ 1.1
RPL13A-212ENST00000488946 IGF1RP08069 1367 aa21.93■■□□□ 1.1
RPL13A-212ENST00000488946 WDR97A6NE52 1622 aa21.91■■□□□ 1.1
RPL13A-212ENST00000488946 IFT140Q96RY7 1462 aa21.88■■□□□ 1.09
RPL13A-212ENST00000488946 RAD54L2Q9Y4B4 1467 aa21.85■■□□□ 1.09
RPL13A-212ENST00000488946 ARAP1Q96P48 1450 aa21.85■■□□□ 1.09
RPL13A-212ENST00000488946 ZEB1P37275 1124 aaPredicted RBP21.83■■□□□ 1.09
RPL13A-212ENST00000488946 CARMIL1Q5VZK9 1371 aa21.81■■□□□ 1.08
RPL13A-212ENST00000488946 CUL7Q14999 1698 aa21.8■■□□□ 1.08
RPL13A-212ENST00000488946 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
RPL13A-212ENST00000488946 ABCA5Q8WWZ7 1642 aa21.77■■□□□ 1.08
RPL13A-212ENST00000488946 ARHGAP35Q9NRY4 1499 aa21.74■■□□□ 1.07
RPL13A-212ENST00000488946 ZNF608Q9ULD9 1512 aaPredicted RBP21.73■■□□□ 1.07
RPL13A-212ENST00000488946 EIF4G3O43432 1585 aaKnown RBP21.67■■□□□ 1.06
RPL13A-212ENST00000488946 RANGAP1P46060 587 aaPredicted RBP21.66■■□□□ 1.06
RPL13A-212ENST00000488946 AQRO60306 1485 aaKnown RBP eCLIP21.65■■□□□ 1.065e-18■■■■■ 39.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms