Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.5■■□□□ 1.676e-8■■■■■ 166.4
SF3B1O75533 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.056e-8■■■■■ 166.4
SF3B1O75533 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC14.54□□□□□ -0.086e-8■■■■■ 166.4
SF3B1O75533 DNMT3A-202ENST00000321117 4279 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.346e-8■■■■■ 166.4
SF3B1O75533 DNMT3A-204ENST00000380756 4477 ntTSL 1 (best)12.67□□□□□ -0.386e-8■■■■■ 166.4
SF3B1O75533 DNMT3A-201ENST00000264709 9501 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.516e-8■■■■■ 166.4
SF3B1O75533 ATP6V1C1-203ENST00000518857 1501 ntTSL 2 BASIC10.37□□□□□ -0.756e-8■■■■■ 166.4
SF3B1O75533 RPAP1-211ENST00000568413 586 ntTSL 39.59□□□□□ -0.876e-8■■■■■ 166.4
SF3B1O75533 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.916e-8■■■■■ 166.4
SF3B1O75533 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.9□□□□□ -2.272e-6■■■■■ 166
SF3B1O75533 MTMR14-204ENST00000414996 1746 ntTSL 1 (best)15.38■□□□□ 0.051e-6■■■■■ 165.9
SF3B1O75533 AKT1-205ENST00000553506 2830 ntTSL 220.17■□□□□ 0.826e-9■■■■■ 165.8
SF3B1O75533 AKT1-209ENST00000554585 858 ntTSL 318.12■□□□□ 0.496e-9■■■■■ 165.8
SF3B1O75533 AKT1-207ENST00000554192 922 ntTSL 215.89■□□□□ 0.136e-9■■■■■ 165.8
SF3B1O75533 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.738e-11■■■■■ 165.6
SF3B1O75533 STX17-202ENST00000524405 941 ntTSL 518.64■□□□□ 0.578e-11■■■■■ 165.6
SF3B1O75533 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.488e-11■■■■■ 165.6
SF3B1O75533 STX17-208ENST00000529340 858 ntTSL 1 (best)14.15□□□□□ -0.158e-11■■■■■ 165.6
SF3B1O75533 STX17-206ENST00000525847 828 ntTSL 313.44□□□□□ -0.268e-11■■■■■ 165.6
SF3B1O75533 STX17-201ENST00000259400 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.628e-11■■■■■ 165.6
SF3B1O75533 SLC6A9-209ENST00000492434 592 ntTSL 324.93■■□□□ 1.582e-6■■■■■ 165.4
SF3B1O75533 SLC6A9-208ENST00000489764 930 ntTSL 320.49■□□□□ 0.872e-6■■■■■ 165.4
SF3B1O75533 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.7■□□□□ 0.12e-6■■■■■ 165.4
SF3B1O75533 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.27■□□□□ 0.042e-6■■■■■ 165.4
SF3B1O75533 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.182e-6■■■■■ 165.4
SF3B1O75533 SLC6A9-206ENST00000466926 591 ntTSL 312.52□□□□□ -0.412e-6■■■■■ 165.4
SF3B1O75533 BCAS3-222ENST00000589222 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.462e-6■■■■■ 165.4
SF3B1O75533 BCAS3-202ENST00000407086 3496 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.532e-6■■■■■ 165.4
SF3B1O75533 BCAS3-217ENST00000588462 3559 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.592e-6■■■■■ 165.4
SF3B1O75533 BCAS3-201ENST00000390652 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.632e-6■■■■■ 165.4
SF3B1O75533 BCAS3-203ENST00000408905 3514 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.662e-6■■■■■ 165.4
SF3B1O75533 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC8.11□□□□□ -1.111e-7■■■■■ 165.2
SF3B1O75533 SMC4-211ENST00000469858 1971 ntTSL 218.93■□□□□ 0.621e-7■■■■■ 165.2
SF3B1O75533 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.511e-7■■■■■ 165.2
SF3B1O75533 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.88■□□□□ 0.131e-7■■■■■ 165.2
SF3B1O75533 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.281e-7■■■■■ 165.2
SF3B1O75533 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC10.62□□□□□ -0.711e-7■■■■■ 165.2
SF3B1O75533 RPS19-207ENST00000600467 420 ntTSL 222.99■■□□□ 1.274e-7■■■■■ 165
SF3B1O75533 RPS19-204ENST00000598399 1172 ntTSL 514.29□□□□□ -0.124e-7■■■■■ 165
SF3B1O75533 RPS19-203ENST00000598261 307 ntTSL 313.19□□□□□ -0.34e-7■■■■■ 165
SF3B1O75533 RPS19-208ENST00000601492 342 ntTSL 59.09□□□□□ -0.954e-7■■■■■ 165
SF3B1O75533 POLR3E-217ENST00000569757 662 ntTSL 418.48■□□□□ 0.556e-10■■■■■ 165
SF3B1O75533 POLR3E-218ENST00000569787 727 ntTSL 314.88□□□□□ -0.036e-10■■■■■ 165
SF3B1O75533 CLN3-234ENST00000568472 1011 ntTSL 323.81■■□□□ 1.43e-9■■■■■ 164.7
SF3B1O75533 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.62■■□□□ 1.373e-9■■■■■ 164.7
SF3B1O75533 CLN3-219ENST00000565778 688 ntTSL 1 (best)22.75■■□□□ 1.233e-9■■■■■ 164.7
SF3B1O75533 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.53■■□□□ 1.23e-9■■■■■ 164.7
SF3B1O75533 CLN3-209ENST00000561689 1957 ntTSL 222.31■■□□□ 1.163e-9■■■■■ 164.7
SF3B1O75533 CLN3-212ENST00000564574 1159 ntTSL 222.13■■□□□ 1.133e-9■■■■■ 164.7
SF3B1O75533 CLN3-245ENST00000636172 1536 ntTSL 221.96■■□□□ 1.113e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-206ENST00000568224 1721 ntTSL 1 (best)21.86■■□□□ 1.093e-9■■■■■ 164.7
SF3B1O75533 CLN3-262ENST00000637699 1228 ntTSL 221.51■■□□□ 1.033e-9■■■■■ 164.7
SF3B1O75533 CLN3-250ENST00000636839 2018 ntTSL 521.16■□□□□ 0.983e-9■■■■■ 164.7
SF3B1O75533 CLN3-225ENST00000566824 1326 ntTSL 521.15■□□□□ 0.983e-9■■■■■ 164.7
SF3B1O75533 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.973e-9■■■■■ 164.7
SF3B1O75533 CLN3-260ENST00000637578 1577 ntTSL 221.06■□□□□ 0.963e-9■■■■■ 164.7
SF3B1O75533 CLN3-230ENST00000568076 1968 ntTSL 520.93■□□□□ 0.943e-9■■■■■ 164.7
SF3B1O75533 CLN3-218ENST00000565688 650 ntTSL 320.67■□□□□ 0.93e-9■■■■■ 164.7
SF3B1O75533 CLN3-227ENST00000567495 769 ntTSL 520.51■□□□□ 0.873e-9■■■■■ 164.7
SF3B1O75533 CLN3-241ENST00000635861 1404 ntTSL 520.35■□□□□ 0.853e-9■■■■■ 164.7
SF3B1O75533 CLN3-258ENST00000637184 1753 ntTSL 520.16■□□□□ 0.823e-9■■■■■ 164.7
SF3B1O75533 CLN3-214ENST00000565140 1225 ntTSL 220.12■□□□□ 0.813e-9■■■■■ 164.7
SF3B1O75533 CLN3-237ENST00000569030 1109 ntTSL 220.12■□□□□ 0.813e-9■■■■■ 164.7
SF3B1O75533 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.12■□□□□ 0.813e-9■■■■■ 164.7
SF3B1O75533 CLN3-221ENST00000566057 931 ntTSL 1 (best)20.12■□□□□ 0.813e-9■■■■■ 164.7
SF3B1O75533 CLN3-233ENST00000568452 1616 ntTSL 519.96■□□□□ 0.793e-9■■■■■ 164.7
SF3B1O75533 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.91■□□□□ 0.783e-9■■■■■ 164.7
SF3B1O75533 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.68■□□□□ 0.743e-9■■■■■ 164.7
SF3B1O75533 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.64■□□□□ 0.743e-9■■■■■ 164.7
SF3B1O75533 CLN3-243ENST00000635973 1084 ntTSL 519.64■□□□□ 0.733e-9■■■■■ 164.7
SF3B1O75533 CLN3-239ENST00000628023 1183 ntTSL 519.58■□□□□ 0.733e-9■■■■■ 164.7
SF3B1O75533 CLN3-247ENST00000636351 1292 ntTSL 519.25■□□□□ 0.673e-9■■■■■ 164.7
SF3B1O75533 CLN3-263ENST00000637871 1606 ntTSL 519.03■□□□□ 0.643e-9■■■■■ 164.7
SF3B1O75533 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.9■□□□□ 0.623e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-211ENST00000636766 2061 ntTSL 518.8■□□□□ 0.63e-9■■■■■ 164.7
SF3B1O75533 CLN3-231ENST00000568422 1168 ntTSL 518.62■□□□□ 0.573e-9■■■■■ 164.7
SF3B1O75533 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.47■□□□□ 0.553e-9■■■■■ 164.7
SF3B1O75533 CLN3-256ENST00000637107 1946 ntTSL 518.27■□□□□ 0.523e-9■■■■■ 164.7
SF3B1O75533 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.21■□□□□ 0.513e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-209ENST00000637299 1954 ntTSL 517.89■□□□□ 0.453e-9■■■■■ 164.7
SF3B1O75533 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.83■□□□□ 0.443e-9■■■■■ 164.7
SF3B1O75533 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.73■□□□□ 0.433e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-208ENST00000636017 2223 ntTSL 517.5■□□□□ 0.393e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-207ENST00000636866 2452 ntTSL 517.33■□□□□ 0.363e-9■■■■■ 164.7
SF3B1O75533 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.24■□□□□ 0.353e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-202ENST00000637376 2512 ntTSL 517.05■□□□□ 0.323e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-203ENST00000636078 2382 ntTSL 516.59■□□□□ 0.253e-9■■■■■ 164.7
SF3B1O75533 CLN3-236ENST00000568558 634 ntTSL 516.5■□□□□ 0.233e-9■■■■■ 164.7
SF3B1O75533 CLN3-222ENST00000566083 1409 ntTSL 216.46■□□□□ 0.233e-9■■■■■ 164.7
SF3B1O75533 CLN3-213ENST00000565047 461 ntTSL 1 (best)16.32■□□□□ 0.23e-9■■■■■ 164.7
SF3B1O75533 CLN3-251ENST00000636853 2289 ntTSL 516.11■□□□□ 0.173e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-204ENST00000636503 2521 ntTSL 516.05■□□□□ 0.163e-9■■■■■ 164.7
SF3B1O75533 CLN3-253ENST00000636977 2969 ntTSL 515.17■□□□□ 0.023e-9■■■■■ 164.7
SF3B1O75533 CLN3-242ENST00000635958 1837 ntTSL 514.98□□□□□ -0.013e-9■■■■■ 164.7
SF3B1O75533 CLN3-235ENST00000568497 758 ntTSL 314.97□□□□□ -0.013e-9■■■■■ 164.7
SF3B1O75533 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.7□□□□□ -0.063e-9■■■■■ 164.7
SF3B1O75533 CLN3-210ENST00000563874 3081 ntTSL 213.55□□□□□ -0.243e-9■■■■■ 164.7
SF3B1O75533 CLN3-238ENST00000569430 3867 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.563e-9■■■■■ 164.7
SF3B1O75533 CLN3-244ENST00000636147 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.613e-9■■■■■ 164.7
SF3B1O75533 LMBR1-215ENST00000461603 612 ntTSL 45.98□□□□□ -1.452e-7■■■■■ 164.5
Retrieved 100 of 46,956 protein–RNA pairs in 1918.9 ms