RNA–Protein interactions for RNA: ENST00000357388.7

SMC4-202, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-202ENST00000357388 DCAF8L2P0C7V8 631 aa21.66■■□□□ 1.06
SMC4-202ENST00000357388 PELP1Q8IZL8 1130 aaKnown RBP21.13■□□□□ 0.97
SMC4-202ENST00000357388 MYT1Q01538 1121 aa20.43■□□□□ 0.86
SMC4-202ENST00000357388 SUPT5HO00267 1087 aaKnown RBP20.23■□□□□ 0.83
SMC4-202ENST00000357388 CCER1Q8TC90 406 aaPredicted RBP20.11■□□□□ 0.81
SMC4-202ENST00000357388 ERICH6Q7L0X2 663 aa20.1■□□□□ 0.81
SMC4-202ENST00000357388 FAM9AQ8IZU1 332 aaPredicted RBP20.02■□□□□ 0.8
SMC4-202ENST00000357388 CENPBP07199 599 aaPredicted RBP19.97■□□□□ 0.79
SMC4-202ENST00000357388 APLP2Q06481 763 aa19.93■□□□□ 0.78
SMC4-202ENST00000357388 ZEB1P37275 1124 aaPredicted RBP19.75■□□□□ 0.75
SMC4-202ENST00000357388 EHMT2Q96KQ7 1210 aa19.69■□□□□ 0.74
SMC4-202ENST00000357388 SHROOM4Q9ULL8 1493 aa19.62■□□□□ 0.73
SMC4-202ENST00000357388 NISCHQ9Y2I1 1504 aa19.49■□□□□ 0.71
SMC4-202ENST00000357388 NEFLP07196 543 aa19.47■□□□□ 0.71
SMC4-202ENST00000357388 PCGF6Q9BYE7 350 aa19.41■□□□□ 0.7
SMC4-202ENST00000357388 YTHDC1Q96MU7 727 aaKnown RBP19.26■□□□□ 0.67
SMC4-202ENST00000357388 ATP1B4Q9UN42 357 aaPredicted RBP19.07■□□□□ 0.64
SMC4-202ENST00000357388 TTBK1Q5TCY1 1321 aaPredicted RBP19.06■□□□□ 0.64
SMC4-202ENST00000357388 DAXXQ9UER7 740 aaPredicted RBP19.03■□□□□ 0.64
SMC4-202ENST00000357388 RANGAP1P46060 587 aaPredicted RBP18.98■□□□□ 0.63
SMC4-202ENST00000357388 TRIM41Q8WV44 630 aa18.84■□□□□ 0.61
SMC4-202ENST00000357388 UBTFP17480 764 aaKnown RBP18.8■□□□□ 0.6
SMC4-202ENST00000357388 RTL5Q5HYW3 569 aaPredicted RBP18.76■□□□□ 0.59
SMC4-202ENST00000357388 HRCP23327 699 aa18.67■□□□□ 0.58
SMC4-202ENST00000357388 TRIM26Q12899 539 aaPredicted RBP18.65■□□□□ 0.58
SMC4-202ENST00000357388 MYT1LQ9UL68 1186 aa18.65■□□□□ 0.58
SMC4-202ENST00000357388 ZNF316A6NFI3 1004 aaPredicted RBP18.54■□□□□ 0.56
SMC4-202ENST00000357388 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.47■□□□□ 0.55
SMC4-202ENST00000357388 HNRNPUL2Q1KMD3 747 aaKnown RBP18.47■□□□□ 0.55
SMC4-202ENST00000357388 POLR3GLQ9BT43 218 aa18.31■□□□□ 0.52
SMC4-202ENST00000357388 CLSPNQ9HAW4 1339 aa18.27■□□□□ 0.52
SMC4-202ENST00000357388 DIEXFQ68CQ4 756 aaKnown RBP18.21■□□□□ 0.51
SMC4-202ENST00000357388 ITGAEP38570 1179 aa18.17■□□□□ 0.5
SMC4-202ENST00000357388 SLC4A1APQ9BWU0 796 aaKnown RBP18.17■□□□□ 0.5
SMC4-202ENST00000357388 CDK11AQ9UQ88 783 aaPredicted RBP18.15■□□□□ 0.5
SMC4-202ENST00000357388 CHIC1Q5VXU3 224 aa18.11■□□□□ 0.49
SMC4-202ENST00000357388 PPARGC1BQ86YN6 1023 aaKnown RBP18.09■□□□□ 0.49
SMC4-202ENST00000357388 GLIPR1L2Q4G1C9 344 aa18.08■□□□□ 0.49
SMC4-202ENST00000357388 GTF3C3Q9Y5Q9 886 aa18.03■□□□□ 0.48
SMC4-202ENST00000357388 CNGB1Q14028 1251 aaPredicted RBP17.95■□□□□ 0.46
SMC4-202ENST00000357388 ANP32AP39687 249 aaKnown RBP17.92■□□□□ 0.46
SMC4-202ENST00000357388 ZBTB47Q9UFB7 747 aaPredicted RBP17.91■□□□□ 0.46
SMC4-202ENST00000357388 ANP32CO43423 234 aa17.86■□□□□ 0.45
SMC4-202ENST00000357388 BCANQ96GW7 911 aa17.86■□□□□ 0.45
SMC4-202ENST00000357388 ANP32BQ92688 251 aaKnown RBP17.84■□□□□ 0.45
SMC4-202ENST00000357388 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.44
SMC4-202ENST00000357388 ACIN1Q9UKV3 1341 aaKnown RBP17.8■□□□□ 0.44
SMC4-202ENST00000357388 TRIM52Q96A61 297 aa17.78■□□□□ 0.44
SMC4-202ENST00000357388 FAM50AQ14320 339 aaKnown RBP17.74■□□□□ 0.43
SMC4-202ENST00000357388 LOC105371045A0A1W2PR82 267 aa17.7■□□□□ 0.42
SMC4-202ENST00000357388 NEFMP07197 916 aa17.69■□□□□ 0.42
SMC4-202ENST00000357388 CANXP27824 592 aaKnown RBP17.65■□□□□ 0.42
SMC4-202ENST00000357388 SLC24A1O60721 1099 aa17.62■□□□□ 0.41
SMC4-202ENST00000357388 FBLN2P98095 1184 aa17.55■□□□□ 0.4
SMC4-202ENST00000357388 ZNF326Q5BKZ1 582 aaKnown RBP17.54■□□□□ 0.4
SMC4-202ENST00000357388 UPF2Q9HAU5 1272 aaKnown RBP17.53■□□□□ 0.4
SMC4-202ENST00000357388 NEUROD1Q13562 356 aa17.52■□□□□ 0.4
SMC4-202ENST00000357388 NPM2Q86SE8 214 aaKnown RBP17.51■□□□□ 0.39
SMC4-202ENST00000357388 ESF1Q9H501 851 aaKnown RBP17.49■□□□□ 0.39
SMC4-202ENST00000357388 HSP90AA1P07900 732 aaKnown RBP17.47■□□□□ 0.39
SMC4-202ENST00000357388 FKBP8Q14318 412 aa17.4■□□□□ 0.38
SMC4-202ENST00000357388 PABPN1Q86U42 306 aaKnown RBP eCLIP17.37■□□□□ 0.37
SMC4-202ENST00000357388 TNNT2P45379 298 aaPredicted RBP17.37■□□□□ 0.37
SMC4-202ENST00000357388 ANP32EQ9BTT0 268 aa17.34■□□□□ 0.37
SMC4-202ENST00000357388 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
SMC4-202ENST00000357388 STAG3Q9UJ98 1225 aa17.29■□□□□ 0.36
SMC4-202ENST00000357388 NBR1Q14596 966 aa17.27■□□□□ 0.35
SMC4-202ENST00000357388 NPM1P06748 294 aaKnown RBP eCLIP17.26■□□□□ 0.35
SMC4-202ENST00000357388 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.26■□□□□ 0.35
SMC4-202ENST00000357388 DDRGK1Q96HY6 314 aa17.24■□□□□ 0.35
SMC4-202ENST00000357388 ABCC9O60706 1549 aa17.23■□□□□ 0.35
SMC4-202ENST00000357388 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
SMC4-202ENST00000357388 ZNF777Q9ULD5 760 aaPredicted RBP17.22■□□□□ 0.35
SMC4-202ENST00000357388 TRIM44Q96DX7 344 aaPredicted RBP17.2■□□□□ 0.34
SMC4-202ENST00000357388 HNRNPUQ00839 825 aaKnown RBP eCLIP17.18■□□□□ 0.342e-22■■■■■ 68.1
SMC4-202ENST00000357388 ERICH6BQ5W0A0 696 aa17.16■□□□□ 0.34
SMC4-202ENST00000357388 CHGAP10645 457 aaKnown RBP17.15■□□□□ 0.34
SMC4-202ENST00000357388 BECN1Q14457 450 aa17.15■□□□□ 0.34
SMC4-202ENST00000357388 ARID3CA6NKF2 412 aa17.13■□□□□ 0.33
SMC4-202ENST00000357388 P3H3Q8IVL6 736 aa17.1■□□□□ 0.33
SMC4-202ENST00000357388 CDK11BP21127 795 aaKnown RBP17.1■□□□□ 0.33
SMC4-202ENST00000357388 GOLGA6L22H0YM25 854 aa17.1■□□□□ 0.33
SMC4-202ENST00000357388 NCLP19338 710 aaKnown RBP17.08■□□□□ 0.33
SMC4-202ENST00000357388 TONSLQ96HA7 1378 aa17.08■□□□□ 0.32
SMC4-202ENST00000357388 PPM1GO15355 546 aaPredicted RBP17.07■□□□□ 0.32
SMC4-202ENST00000357388 PLPPR3Q6T4P5 718 aa17.05■□□□□ 0.32
SMC4-202ENST00000357388 ARXQ96QS3 562 aa17.04■□□□□ 0.32
SMC4-202ENST00000357388 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.32
SMC4-202ENST00000357388 FAM9BQ8IZU0 186 aa17.01■□□□□ 0.31
SMC4-202ENST00000357388 CSRNP3Q8WYN3 585 aa17■□□□□ 0.31
SMC4-202ENST00000357388 DCAF1Q9Y4B6 1507 aa16.98■□□□□ 0.31
SMC4-202ENST00000357388 TMC1Q8TDI8 760 aa16.97■□□□□ 0.31
SMC4-202ENST00000357388 MYH16Q9H6N6 1097 aa16.97■□□□□ 0.31
SMC4-202ENST00000357388 PTMAP06454 111 aaKnown RBP16.95■□□□□ 0.3
SMC4-202ENST00000357388 DDX10Q13206 875 aaKnown RBP16.94■□□□□ 0.3
SMC4-202ENST00000357388 NAP1L5Q96NT1 182 aaPredicted RBP16.94■□□□□ 0.3
SMC4-202ENST00000357388 WDR43Q15061 677 aaKnown RBP eCLIP16.93■□□□□ 0.35e-20■■■■■ 85.2
SMC4-202ENST00000357388 DNTTIP2Q5QJE6 756 aaKnown RBP16.9■□□□□ 0.3
SMC4-202ENST00000357388 MRS2Q9HD23 443 aa16.88■□□□□ 0.29
SMC4-202ENST00000357388 A0A0G2JS52 829 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms